RLG00000000921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000497
Physical Location & Seq
Reverse (-)
7998218 .. 7999415
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000921

Sequence Viewer

Length: 522 bp
ATGGATCCGCTTCCGCAAGAAGTCGACGATTACATCAGAGAGTCGATTGACCACACCCTCGGCCTCCCCGTGTCCACACAGACTCTTGAGTACACGCTTCTACTCCCCAGATTGAAGGAGAAGGATCAGTCTCTGGAACGATCTAGGGCGGAGGCTTGTATGAACGCTCAGGCTTTGAGGAAGTTTGTGGAGGAGAAATCAGAGACTAGCGACGGATGCAACAAGTTCGAGAAGGAGTGCTCGCTCTATGATCATGACCGAGAGGCTTTGATGGATTTTGGGAACGAGGCTGACCAGAGGACTAAGGAGGCTGAGTTTCGGGTCGAAGAGTTGAAGGATGAACTGGGAGAATTGAGGGAAGAATTGAAGTTTTACAAGAATGAATACGATAAGCTTTTGGTAATTCTTTGCTCCTGTCTGTTTCTTTGCACAAATTTGCAGCCAGGCTACCTTTTTCCATATACTCTTACACCAAAAGGTGAGATGCGCATTTGTGAGGGCGTCTTACCCTCGAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

20.09

Weight (kDa)

4.63

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 488
AccI GTMKAC 1 cut(s) 24
AciI CCGC 3 cut(s) 8, 14, 149
AclWI GGATC 2 cut(s) 12, 132
AcsI RAATTY 1 cut(s) 433
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 1 cut(s) 92
AgsI TTSAA 3 cut(s) 115, 334, 367
AjnI CCWGG 1 cut(s) 442
AluBI AGCT 1 cut(s) 394
AluI AGCT 1 cut(s) 394
Alw21I GWGCWC 1 cut(s) 242
Alw26I GTCTC 2 cut(s) 135, 197
AlwI GGATC 2 cut(s) 12, 132
AlwNI CAGNNNCTG 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 511
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 439
ApoI RAATTY 1 cut(s) 433
AspLEI GCGC 1 cut(s) 489
AsuHPI GGTGA 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 511
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 451
BccI CCATC 1 cut(s) 265
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 1 cut(s) 444
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 135, 197
BfaI CTAG 2 cut(s) 144, 207
BisI GCNGC 1 cut(s) 440
BlsI GCNGC 1 cut(s) 441
Bme1390I CCNGG 1 cut(s) 444
BmeT110I CYCGRG 1 cut(s) 511
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 444
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 2 cut(s) 206, 474
BmuI ACTGGG 1 cut(s) 353
Bpu10I CCTNAGC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bse1I ACTGG 1 cut(s) 348
BseBI CCWGG 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 221, 343
BseMII CTCAG 2 cut(s) 182, 303
BseNI ACTGG 1 cut(s) 348
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 451
BshFI GGCC 1 cut(s) 63
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 1 cut(s) 511
BsmAI GTCTC 2 cut(s) 135, 197
BsnI GGCC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 511
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 4 cut(s) 4, 124, 140, 250
BspACI CCGC 3 cut(s) 8, 14, 149
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 2 cut(s) 181, 304
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 132
BsrI ACTGG 1 cut(s) 348
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 4 cut(s) 4, 124, 140, 250
BssNI GRCGYC 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 444
Bst6I CTCTTC 1 cut(s) 321
BstACI GRCGYC 1 cut(s) 501
BstC8I GCNNGC 1 cut(s) 242
BstDEI CTNAG 3 cut(s) 168, 303, 312
BstF5I GGATG 2 cut(s) 221, 343
BstHHI GCGC 1 cut(s) 489
BstKTI GATC 4 cut(s) 7, 127, 143, 253
BstMAI GTCTC 2 cut(s) 135, 197
BstMBI GATC 4 cut(s) 4, 124, 140, 250
BstMWI GCNNNNNNNGC 1 cut(s) 216
BstNI CCWGG 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 442
BstV1I GCAGC 1 cut(s) 451
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 63
BtsCI GGATG 2 cut(s) 221, 343
Cac8I GCNNGC 1 cut(s) 242
CaiI CAGNNNCTG 1 cut(s) 133
CciI TCATGA 1 cut(s) 253
CfoI GCGC 1 cut(s) 489
CseI GACGC 1 cut(s) 490
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 254
CviJI RGCY 9 cut(s) 63, 155, 173, 266, 290, 311, 394, 442, 447
CviKI_1 RGCY 9 cut(s) 63, 155, 173, 266, 290, 311, 394, 442, 447
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 3 cut(s) 168, 303, 312
DpnI GATC 4 cut(s) 6, 126, 142, 252
DpnII GATC 4 cut(s) 4, 124, 140, 250
Eam1104I CTCTTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 321
EciI GGCGGA 1 cut(s) 164
Eco88I CYCGRG 1 cut(s) 511
EcoRII CCWGG 1 cut(s) 442
FaeI CATG 1 cut(s) 257
FaiI YATR 5 cut(s) 161, 249, 255, 460, 462
FatI CATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 440
FokI GGATG 2 cut(s) 228, 350
Fsp4HI GCNGC 1 cut(s) 440
FspAI RTGCGCAY 1 cut(s) 488
FspBI CTAG 2 cut(s) 144, 207
FspI TGCGCA 1 cut(s) 488
GlaI GCGC 1 cut(s) 488
GluI GCNGC 1 cut(s) 440
HaeIII GGCC 1 cut(s) 63
HgaI GACGC 1 cut(s) 490
HhaI GCGC 1 cut(s) 489
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 1 cut(s) 487
HinP1I GCGC 1 cut(s) 487
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 2 cut(s) 41, 82
HphI GGTGA 1 cut(s) 491
Hpy166II GTNNAC 3 cut(s) 25, 75, 93
Hpy188I TCNGA 2 cut(s) 38, 202
Hpy188III TCNNGA 4 cut(s) 86, 134, 229, 254
Hpy8I GTNNAC 3 cut(s) 25, 75, 93
Hpy99I CGWCG 2 cut(s) 29, 215
HpyAV CCTTC 4 cut(s) 109, 115, 226, 328
HpyCH4V TGCA 3 cut(s) 219, 429, 439
HpyF10VI GCNNNNNNNGC 1 cut(s) 216
HpyF3I CTNAG 3 cut(s) 168, 303, 312
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 1 cut(s) 487
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 4 cut(s) 4, 124, 140, 250
LmnI GCTCC 1 cut(s) 416
LpnPI CCDG 8 cut(s) 119, 121, 155, 308, 329, 427, 429, 456
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 2 cut(s) 206, 474
MaeI CTAG 2 cut(s) 144, 207
MalI GATC 4 cut(s) 6, 126, 142, 252
MboI GATC 4 cut(s) 4, 124, 140, 250
MboII GAAGA 2 cut(s) 338, 371
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 242
MluCI AATT 4 cut(s) 350, 362, 402, 433
MlyI GAGTC 2 cut(s) 50, 76
MspR9I CCNGG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 444
MwoI GCNNNNNNNGC 1 cut(s) 216
NdeII GATC 4 cut(s) 4, 124, 140, 250
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 39
NsbI TGCGCA 1 cut(s) 488
PaeR7I CTCGAG 1 cut(s) 511
PagI TCATGA 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PkrI GCNGC 1 cut(s) 441
PleI GAGTC 2 cut(s) 49, 76
PpsI GAGTC 2 cut(s) 49, 76
Psp6I CCWGG 1 cut(s) 442
PspGI CCWGG 1 cut(s) 442
PspN4I GGNNCC 1 cut(s) 6
PspXI VCTCGAGB 1 cut(s) 511
PstNI CAGNNNCTG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 1 cut(s) 440
Sau3AI GATC 4 cut(s) 4, 124, 140, 250
SchI GAGTC 2 cut(s) 50, 76
ScrFI CCNGG 1 cut(s) 444
SduI GDGCHC 1 cut(s) 242
SetI ASST 3 cut(s) 396, 453, 481
SfaNI GCATC 2 cut(s) 206, 474
Sfr274I CTCGAG 1 cut(s) 511
SlaI CTCGAG 1 cut(s) 511
SmlI CTYRAG 2 cut(s) 86, 511
SmoI CTYRAG 2 cut(s) 86, 511
Sse9I AATT 4 cut(s) 350, 362, 402, 433
SsiI CCGC 3 cut(s) 8, 14, 149
SspMI CTAG 2 cut(s) 144, 207
StyD4I CCNGG 1 cut(s) 442
TaqI TCGA 5 cut(s) 24, 44, 228, 324, 512
TaqII GACCGA 1 cut(s) 273
TasI AATT 4 cut(s) 350, 362, 402, 433
TatI WGTACW 1 cut(s) 90
TseI GCWGC 1 cut(s) 439
TspDTI ATGAA 3 cut(s) 176, 354, 396
TspGWI ACGGA 1 cut(s) 228
XapI RAATTY 1 cut(s) 433
XhoI CTCGAG 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 2 cut(s) 144, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.