Rorug05G0218400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000497
Physical Location & Seq
Reverse (-)
22456443 .. 22459898
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0218400.1

Sequence Viewer

Length: 2070 bp
ATGTCGCACGCCGGGAAGCCCATTTCGGAGCCAGGCGTCGACTCCTCGCTCTCCGATCGCCTCCGTGACTCACTGAGTTGCGAGGCCAACAAGCCCGACTTCCGAGAACTCGATCTGGGCTCGCCCGTTTCGCCGCTGCGGACTCGCCAGAGCGGTGGGCTCGCCACTGCCACCAGCAGCAGCTCCAGTTCGTCCGGATCGGTGTCGGGTCGGAATGGCCCCAACCCGGTTAATGCGAAGAGGTCCGGTTCGGGGCCCAACAACAACCACTCCGGCGACCTCTCCGGCTCCAGCGAGAGCAGTCCCACCAATACCCGGAATAGCTCCAAACCGGGTCATACGAGATCCAATTCCGGCTCCGCCCCCCCCTTAATTTACTCGGGTCAGAGCTCCTCCGCCGTGAACTCGTCGCCGAGATCGAATGTTCTGCCCACCGGGAACATATGCCCATCCGGGAAAATCCTCAAGGCGGGTATGGTTCCGAATCGGAGCTCCAGAACCGACGTTTTGGGCTCCGGGACAGGCTATTACGGCCACGGGAGCATAATGCGGGGCGGCGCGGCGGCCAAGAGCGTCGGCGCCACCGAGGCGGTGAGCTCCAGAACAAGCGGCGGCGGAGAGTTGGGGAAGAGAGGAATGGGGAGTGTGGATCCGGAAGAGGTGAAGAGAGCTGGAAATGAGCACTACAGAAGAGGCAATTTTGCAGAGGCTTTGAGCTTGTATGATCGGGCAATTGCTTTGGCTCCGGCCAATGCGGCTTACCGGAGCAACCGGGCTGCGGCATTGACCGGTCTAGGGCGGCTGGGGGAGGCGGTGAGGGAGTGTGAGGAGGCTGTGAAGTTGGATCCCAATTACGGCAGAGCTCACCACCGTTTGGGTTCTTTGTTTCTTAGGTTAGGGCAGGTGGAGAATGCCAGGAGGCATTTTTGTCTTCCAGGGCTGCAGCCGGATGCGGCTGAGTTACGGAAATTAGAGGTAGTAGAGAAGCATCTTAAAAAATGTACAGATGCGCGTCGTGTAGGAGATTGGAAAAGTGTATTGAGGGAAAATGACTCTGCTATTGCTGCTGGAGCTGACTTTTCTCCCCAGCTCTCTATGTGTAGAGCGGAAGCACATTTGAAGCTCCACCAAATTGATGATGCTGAATCAGTCCTATCAAATATACCCAAATTAGACACATATACCAACTCCTCACAATCTAAGTTCTTTGGGATGCTTTCTGAAGCATATACTTACTTTGTCTTGGCCCAAATTGAGATGGCATTTGGAAGGTTTGAGAATGCAGTTACTTCTGCTGAGAAAGCTGGAAAGATTGATCCCCGAAACCTAGAAGTTGCGTCGCTGCTTCAAAATGTGCGAATGGTGGTGAGAGCTCGTGCCCGTGGCAATGATCTCTTCAAGTCTGAAAGGTTCACCGAAGCGTGCTTAGCTTATGGTGATGGTCTGAGGCTTGATCCTTCAAACTCTGTTCTATATTGCAACAGAGCAGCTTGCTGGTTTAAGCTTGGGATGTGGGAGCATTCCATTGAAGACTGCAACCAGGCCCTATGTATTAAACCGAATTACACAAAAGCTCTTCTTCGAAGGGCTGCATCAAACAGCAAGCTAGAAAGATGGGTCGATGCTGTTAGAGACTATGAGATCTTGAGGAGGGAGCTTCCTGATGACAATGAAGTTGCTGAATCATTGTTTCATGCTCAAGTTGCATTGAAAAAGTCTCGTGGGGAAGAAGTGCATAATATGAAGTTTGGGGGTGAAGTAGAAGAAATATTGGGTCTTGAGCAGTTCAGAGCTGCAATATGTTTACCAGGTGTCTCCGTGGTCCATTTCAAAGCAGCATCTGATTTGCAATGCAAGCAAATATCACCTTTCGTGGACACGCTCTGTGGTCGCTACCCATCCATAAATTTCCTCAAGGTTGACATTGAAGAAAGCCCAGCAGTTGCGAACATTGAAAATGTGAAGATTGTACCAACATTCAAGATATACAAAAAGGGTAGCCGAGTGAAGGAAATGGTGTGCCCCTGTCGCGAAATGTTAGAACACTCGGTCAGGCATTATAGCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

689

Amino Acids

74.76

Weight (kDa)

8.96

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_16 PF13432 224 - 284 8.2e-08 Tetratricopeptide repeat
TPR_11 PF13414 225 - 266 7.4e-06 TPR repeat
TPR_1 PF00515 491 - 522 1.2e-06 Tetratricopeptide repeat
Thioredoxin PF00085 596 - 675 5.7e-11 Thioredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 892
Acc36I ACCTGC 1 cut(s) 892
AccB1I GGYRCC 1 cut(s) 578
AccB7I CCANNNNNTGG 1 cut(s) 874
AccBSI CCGCTC 2 cut(s) 153, 1106
AccI GTMKAC 1 cut(s) 39
AccII CGCG 3 cut(s) 560, 1012, 2031
AccIII TCCGGA 2 cut(s) 194, 652
AclWI GGATC 8 cut(s) 205, 339, 644, 657, 839, 852, 1310, 1448
AcoI YGGCCR 3 cut(s) 532, 564, 747
AcsI RAATTY 1 cut(s) 1906
AcuI CTGAAG 1 cut(s) 1242
AcyI GRCGYC 2 cut(s) 36, 579
AfaI GTAC 2 cut(s) 1003, 1971
AfiI CCNNNNNNNGG 9 cut(s) 226, 252, 315, 469, 778, 795, 854, 874, 2008
AgeI ACCGGT 1 cut(s) 788
AjnI CCWGG 5 cut(s) 31, 914, 934, 1539, 1807
Alw21I GWGCWC 6 cut(s) 392, 494, 599, 684, 865, 1375
Alw26I GTCTC 3 cut(s) 1626, 1722, 1819
AlwI GGATC 8 cut(s) 205, 339, 644, 657, 839, 852, 1310, 1448
AlwNI CAGNNNCTG 1 cut(s) 1841
Ama87I CYCGRG 1 cut(s) 379
Aor13HI TCCGGA 2 cut(s) 194, 652
AoxI GGCC 8 cut(s) 84, 217, 254, 532, 564, 747, 1245, 1542
ApaI GGGCCC 1 cut(s) 258
ApoI RAATTY 1 cut(s) 1906
AsiGI ACCGGT 1 cut(s) 788
AspLEI GCGC 3 cut(s) 560, 581, 1012
AspS9I GGNCC 7 cut(s) 218, 243, 254, 255, 1246, 1543, 1822
AsuC2I CCSGG 8 cut(s) 13, 227, 316, 333, 436, 454, 517, 773
AsuHPI GGTGA 9 cut(s) 604, 673, 826, 857, 1378, 1405, 1448, 1766, 1857
AsuII TTCGAA 1 cut(s) 1582
AvaI CYCGRG 1 cut(s) 379
AvaII GGWCC 2 cut(s) 243, 1822
BaeGI GKGCMC 3 cut(s) 258, 1381, 2024
BamHI GGATCC 2 cut(s) 649, 844
BanI GGYRCC 1 cut(s) 578
BanII GRGCYC 9 cut(s) 122, 162, 258, 392, 494, 515, 599, 865, 1375
BauI CACGAG 2 cut(s) 1374, 1719
BbsI GAAGAC 2 cut(s) 923, 1536
Bbv12I GWGCWC 6 cut(s) 392, 494, 599, 684, 865, 1375
BccI CCATC 5 cut(s) 457, 1252, 1433, 1608, 1906
BceAI ACGGC 3 cut(s) 383, 547, 871
BcgI CGANNNNNNTGC 2 cut(s) 409, 443
BciT130I CCWGG 5 cut(s) 33, 916, 936, 1541, 1809
BcnI CCSGG 8 cut(s) 13, 227, 316, 333, 436, 454, 517, 773
BcoDI GTCTC 3 cut(s) 1626, 1722, 1819
BfaI CTAG 3 cut(s) 794, 1328, 1607
BfmI CTRYAG 2 cut(s) 685, 941
BfoI RGCGCY 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 892
BglI GCCNNNNNGGC 2 cut(s) 587, 755
BglII AGATCT 1 cut(s) 1641
BlpI GCTNAGC 1 cut(s) 1426
Bme18I GGWCC 2 cut(s) 243, 1822
BmeT110I CYCGRG 1 cut(s) 379
BmgT120I GGNCC 7 cut(s) 218, 243, 254, 255, 1246, 1543, 1822
BmsI GCATC 8 cut(s) 940, 997, 997, 1129, 1203, 1601, 1612, 1847
BpiI GAAGAC 2 cut(s) 923, 1536
BpmI CTGGAG 5 cut(s) 169, 274, 478, 583, 1089
Bpu1102I GCTNAGC 1 cut(s) 1426
Bpu14I TTCGAA 1 cut(s) 1582
BpuEI CTTGAG 5 cut(s) 449, 1666, 1683, 1799, 1898
BpuMI CCSGG 8 cut(s) 13, 227, 316, 333, 436, 454, 517, 773
BsaHI GRCGYC 2 cut(s) 36, 579
BsaJI CCNNGG 5 cut(s) 535, 585, 935, 1381, 1818
BsaWI WCCGGW 5 cut(s) 194, 245, 652, 762, 788
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 9 cut(s) 226, 252, 315, 469, 778, 795, 854, 874, 2008
Bse118I RCCGGY 1 cut(s) 788
Bse1I ACTGG 1 cut(s) 186
Bse3DI GCAATG 2 cut(s) 1393, 1856
BseAI TCCGGA 2 cut(s) 194, 652
BseBI CCWGG 5 cut(s) 33, 916, 936, 1541, 1809
BseDI CCNNGG 5 cut(s) 535, 585, 935, 1381, 1818
BseGI GGATG 5 cut(s) 449, 955, 1218, 1515, 1898
BseLI CCNNNNNNNGG 9 cut(s) 226, 252, 315, 469, 778, 795, 854, 874, 2008
BseMI GCAATG 2 cut(s) 1393, 1856
BseMII CTCAG 4 cut(s) 65, 948, 1287, 1436
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 5 cut(s) 34, 382, 842, 1180, 1663
BseSI GKGCMC 3 cut(s) 258, 1381, 2024
BseYI CCCAGC 3 cut(s) 802, 1086, 1936
Bsh1236I CGCG 3 cut(s) 560, 1012, 2031
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 8 cut(s) 86, 219, 256, 534, 566, 749, 1247, 1544
BshNI GGYRCC 1 cut(s) 578
BshTI ACCGGT 1 cut(s) 788
BsiEI CGRYCG 1 cut(s) 58
BsiHKAI GWGCWC 6 cut(s) 392, 494, 599, 684, 865, 1375
BsiHKCI CYCGRG 1 cut(s) 379
BslFI GGGAC 2 cut(s) 288, 532
BslI CCNNNNNNNGG 9 cut(s) 226, 252, 315, 469, 778, 795, 854, 874, 2008
BsmAI GTCTC 3 cut(s) 1626, 1722, 1819
BsmFI GGGAC 2 cut(s) 288, 532
BsmI GAATGC 3 cut(s) 916, 1285, 1519
BsnI GGCC 8 cut(s) 86, 219, 256, 534, 566, 749, 1247, 1544
BsoBI CYCGRG 1 cut(s) 379
Bsp119I TTCGAA 1 cut(s) 1582
Bsp120I GGGCCC 1 cut(s) 254
Bsp13I TCCGGA 2 cut(s) 194, 652
Bsp1407I TGTACA 1 cut(s) 1001
Bsp1720I GCTNAGC 1 cut(s) 1426
Bsp68I TCGCGA 1 cut(s) 2031
BspANI GGCC 8 cut(s) 86, 219, 256, 534, 566, 749, 1247, 1544
BspCNI CTCAG 4 cut(s) 66, 949, 1288, 1437
BspEI TCCGGA 2 cut(s) 194, 652
BspFNI CGCG 3 cut(s) 560, 1012, 2031
BspMAI CTGCAG 1 cut(s) 945
BspMI ACCTGC 1 cut(s) 892
BspPI GGATC 8 cut(s) 205, 339, 644, 657, 839, 852, 1310, 1448
BspQI GCTCTTC 1 cut(s) 1581
BspT104I TTCGAA 1 cut(s) 1582
BspT107I GGYRCC 1 cut(s) 578
BsrBI CCGCTC 2 cut(s) 153, 1106
BsrDI GCAATG 2 cut(s) 1393, 1856
BsrFI RCCGGY 1 cut(s) 788
BsrGI TGTACA 1 cut(s) 1001
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 788
BssECI CCNNGG 5 cut(s) 535, 585, 935, 1381, 1818
BssNI GRCGYC 2 cut(s) 36, 579
BssSI CACGAG 2 cut(s) 1374, 1719
Bst2BI CACGAG 2 cut(s) 1374, 1719
Bst2UI CCWGG 5 cut(s) 33, 916, 936, 1541, 1809
Bst4CI ACNGT 1 cut(s) 872
Bst6I CTCTTC 7 cut(s) 233, 623, 651, 659, 685, 1400, 1581
BstACI GRCGYC 2 cut(s) 36, 579
BstAUI TGTACA 1 cut(s) 1001
BstBI TTCGAA 1 cut(s) 1582
BstC8I GCNNGC 7 cut(s) 9, 122, 162, 1423, 1492, 1604, 1856
BstDEI CTNAG 7 cut(s) 74, 890, 957, 1200, 1296, 1426, 1445
BstDSI CCRYGG 3 cut(s) 535, 1381, 1818
BstF5I GGATG 5 cut(s) 449, 955, 1218, 1515, 1898
BstFNI CGCG 3 cut(s) 560, 1012, 2031
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 3 cut(s) 560, 581, 1012
BstMAI GTCTC 3 cut(s) 1626, 1722, 1819
BstMCI CGRYCG 1 cut(s) 58
BstNI CCWGG 5 cut(s) 33, 916, 936, 1541, 1809
BstSFI CTRYAG 2 cut(s) 685, 941
BstSLI GKGCMC 3 cut(s) 258, 1381, 2024
BstUI CGCG 3 cut(s) 560, 1012, 2031
BstV2I GAAGAC 2 cut(s) 923, 1536
BstX2I RGATCY 4 cut(s) 344, 649, 844, 1641
BstXI CCANNNNNNTGG 1 cut(s) 155
BstYI RGATCY 4 cut(s) 344, 649, 844, 1641
BsuRI GGCC 8 cut(s) 86, 219, 256, 534, 566, 749, 1247, 1544
BtgI CCRYGG 3 cut(s) 535, 1381, 1818
BtsCI GGATG 5 cut(s) 449, 955, 1218, 1515, 1898
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 2 cut(s) 71, 165
BtuMI TCGCGA 1 cut(s) 2031
BveI ACCTGC 1 cut(s) 892
Cac8I GCNNGC 7 cut(s) 9, 122, 162, 1423, 1492, 1604, 1856
CaiI CAGNNNCTG 1 cut(s) 1841
CfoI GCGC 3 cut(s) 560, 581, 1012
Cfr10I RCCGGY 1 cut(s) 788
Cfr13I GGNCC 7 cut(s) 218, 243, 254, 255, 1246, 1543, 1822
CseI GACGC 4 cut(s) 25, 562, 1001, 1326
CsiI ACCWGGT 1 cut(s) 1807
Csp6I GTAC 2 cut(s) 1002, 1970
CspAI ACCGGT 1 cut(s) 788
CviAII CATG 1 cut(s) 1694
CviQI GTAC 2 cut(s) 1002, 1970
DdeI CTNAG 7 cut(s) 74, 890, 957, 1200, 1296, 1426, 1445
DinI GGCGCC 1 cut(s) 580
EaeI YGGCCR 3 cut(s) 532, 564, 747
Eam1104I CTCTTC 7 cut(s) 233, 623, 651, 659, 685, 1400, 1581
EarI CTCTTC 7 cut(s) 233, 623, 651, 659, 685, 1400, 1581
EciI GGCGGA 3 cut(s) 349, 385, 630
Ecl136II GAGCTC 5 cut(s) 390, 492, 597, 863, 1373
Eco24I GRGCYC 9 cut(s) 122, 162, 258, 392, 494, 515, 599, 865, 1375
Eco47I GGWCC 2 cut(s) 243, 1822
Eco53kI GAGCTC 5 cut(s) 390, 492, 597, 863, 1373
Eco57I CTGAAG 1 cut(s) 1242
Eco88I CYCGRG 1 cut(s) 379
EcoICRI GAGCTC 5 cut(s) 390, 492, 597, 863, 1373
EcoO109I RGGNCCY 2 cut(s) 254, 1543
EcoRII CCWGG 5 cut(s) 31, 914, 934, 1539, 1807
EcoT38I GRGCYC 9 cut(s) 122, 162, 258, 392, 494, 515, 599, 865, 1375
EgeI GGCGCC 1 cut(s) 580
EheI GGCGCC 1 cut(s) 580
FaeI CATG 1 cut(s) 1697
FalI AAGNNNNNCTT 4 cut(s) 83, 115, 1563, 1595
FaqI GGGAC 2 cut(s) 288, 532
FatI CATG 1 cut(s) 1693
FauI CCCGC 2 cut(s) 463, 543
FauNDI CATATG 1 cut(s) 443
FblI GTMKAC 1 cut(s) 39
FokI GGATG 5 cut(s) 436, 962, 1225, 1522, 1885
FriOI GRGCYC 9 cut(s) 122, 162, 258, 392, 494, 515, 599, 865, 1375
FspBI CTAG 3 cut(s) 794, 1328, 1607
GlaI GCGC 3 cut(s) 559, 580, 1011
GsaI CCCAGC 3 cut(s) 806, 1090, 1940
GsuI CTGGAG 5 cut(s) 169, 274, 478, 583, 1089
HaeII RGCGCY 1 cut(s) 582
HaeIII GGCC 8 cut(s) 86, 219, 256, 534, 566, 749, 1247, 1544
HgaI GACGC 4 cut(s) 25, 562, 1001, 1326
HhaI GCGC 3 cut(s) 560, 581, 1012
Hin1I GRCGYC 2 cut(s) 36, 579
Hin1II CATG 1 cut(s) 1697
Hin6I GCGC 3 cut(s) 558, 579, 1010
HinP1I GCGC 3 cut(s) 558, 579, 1010
HincII GTYRAC 2 cut(s) 40, 1921
HindII GTYRAC 2 cut(s) 40, 1921
HindIII AAGCTT 1 cut(s) 1502
HinfI GANTC 7 cut(s) 41, 68, 142, 484, 1052, 1145, 1682
HphI GGTGA 9 cut(s) 604, 673, 826, 857, 1378, 1405, 1448, 1766, 1857
Hpy166II GTNNAC 6 cut(s) 40, 403, 1413, 1805, 1876, 1921
Hpy188III TCNNGA 9 cut(s) 195, 495, 600, 653, 1645, 1661, 1778, 1981, 2030
Hpy8I GTNNAC 6 cut(s) 40, 403, 1413, 1805, 1876, 1921
Hpy99I CGWCG 6 cut(s) 41, 412, 506, 578, 1017, 1342
HpyAV CCTTC 4 cut(s) 1263, 1467, 1578, 2002
HpyCH4III ACNGT 1 cut(s) 872
HpyCH4IV ACGT 1 cut(s) 504
HpyF3I CTNAG 7 cut(s) 74, 890, 957, 1200, 1296, 1426, 1445
HpySE526I ACGT 1 cut(s) 504
Hsp92I GRCGYC 2 cut(s) 36, 579
Hsp92II CATG 1 cut(s) 1697
HspAI GCGC 3 cut(s) 558, 579, 1010
KasI GGCGCC 1 cut(s) 578
Kpn2I TCCGGA 2 cut(s) 194, 652
LguI GCTCTTC 1 cut(s) 1581
LweI GCATC 8 cut(s) 940, 997, 997, 1129, 1203, 1601, 1612, 1847
MabI ACCWGGT 1 cut(s) 1807
MaeI CTAG 3 cut(s) 794, 1328, 1607
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 3 cut(s) 65, 960, 1285
MbiI CCGCTC 2 cut(s) 153, 1106
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 4 cut(s) 344, 649, 844, 1641
Mly113I GGCGCC 1 cut(s) 579
MlyI GAGTC 4 cut(s) 35, 62, 136, 1046
MmeI TCCRAC 2 cut(s) 191, 822
MroI TCCGGA 2 cut(s) 194, 652
MseI TTAA 5 cut(s) 231, 371, 993, 1500, 1554
MspA1I CMGCKG 1 cut(s) 136
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 3 cut(s) 916, 1285, 1519
MvaI CCWGG 5 cut(s) 33, 916, 936, 1541, 1809
MvnI CGCG 3 cut(s) 560, 1012, 2031
NarI GGCGCC 1 cut(s) 579
NciI CCSGG 8 cut(s) 13, 227, 316, 333, 436, 454, 517, 773
NdeI CATATG 1 cut(s) 443
NlaIII CATG 1 cut(s) 1697
NmeAIII GCCGAG 2 cut(s) 438, 2027
NmuCI GTSAC 1 cut(s) 65
NruI TCGCGA 1 cut(s) 2031
NspV TTCGAA 1 cut(s) 1582
PaqCI CACCTGC 1 cut(s) 892
PciSI GCTCTTC 1 cut(s) 1581
PcsI WCGNNNNNNNCGW 2 cut(s) 416, 582
PctI GAATGC 3 cut(s) 916, 1285, 1519
PfeI GAWTC 3 cut(s) 484, 1145, 1682
PflMI CCANNNNNTGG 1 cut(s) 874
PfoI TCCNGGA 2 cut(s) 452, 515
PinAI ACCGGT 1 cut(s) 788
Ple19I CGATCG 1 cut(s) 58
PleI GAGTC 4 cut(s) 35, 62, 136, 1046
PluTI GGCGCC 1 cut(s) 582
PpsI GAGTC 4 cut(s) 35, 62, 136, 1046
Psp124BI GAGCTC 5 cut(s) 392, 494, 599, 865, 1375
Psp6I CCWGG 5 cut(s) 31, 914, 934, 1539, 1807
PspFI CCCAGC 3 cut(s) 802, 1086, 1936
PspGI CCWGG 5 cut(s) 31, 914, 934, 1539, 1807
PspOMI GGGCCC 1 cut(s) 254
PspPI GGNCC 7 cut(s) 218, 243, 254, 255, 1246, 1543, 1822
PstI CTGCAG 1 cut(s) 945
PstNI CAGNNNCTG 1 cut(s) 1841
PsuI RGATCY 4 cut(s) 344, 649, 844, 1641
PvuI CGATCG 1 cut(s) 58
RruI TCGCGA 1 cut(s) 2031
RsaI GTAC 2 cut(s) 1003, 1971
RsaNI GTAC 2 cut(s) 1002, 1970
SacI GAGCTC 5 cut(s) 392, 494, 599, 865, 1375
SalI GTCGAC 1 cut(s) 38
SapI GCTCTTC 1 cut(s) 1581
SaqAI TTAA 5 cut(s) 231, 371, 993, 1500, 1554
Sau96I GGNCC 7 cut(s) 218, 243, 254, 255, 1246, 1543, 1822
SchI GAGTC 4 cut(s) 35, 62, 136, 1046
SexAI ACCWGGT 1 cut(s) 1807
SfaNI GCATC 8 cut(s) 940, 997, 997, 1129, 1203, 1601, 1612, 1847
SfcI CTRYAG 2 cut(s) 685, 941
SfoI GGCGCC 1 cut(s) 580
SfuI TTCGAA 1 cut(s) 1582
SinI GGWCC 2 cut(s) 243, 1822
SmlI CTYRAG 5 cut(s) 464, 1645, 1698, 1778, 1913
SmoI CTYRAG 5 cut(s) 464, 1645, 1698, 1778, 1913
SspDI GGCGCC 1 cut(s) 578
SspI AATATT 1 cut(s) 1770
SspMI CTAG 3 cut(s) 794, 1328, 1607
SstI GAGCTC 5 cut(s) 392, 494, 599, 865, 1375
TaaI ACNGT 1 cut(s) 872
TaiI ACGT 1 cut(s) 507
TaqI TCGA 5 cut(s) 39, 111, 419, 1582, 1620
TaqII GACCGA 1 cut(s) 2038
TatI WGTACW 1 cut(s) 1001
TfiI GAWTC 3 cut(s) 484, 1145, 1682
Tru1I TTAA 5 cut(s) 231, 371, 993, 1500, 1554
Tru9I TTAA 5 cut(s) 231, 371, 993, 1500, 1554
TscAI CASTG 2 cut(s) 78, 172
TseFI GTSAC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 3 cut(s) 1682, 1686, 1757
TspGWI ACGGA 3 cut(s) 53, 979, 1807
TspRI CASTG 2 cut(s) 78, 172
Van91I CCANNNNNTGG 1 cut(s) 874
VpaK11BI GGWCC 2 cut(s) 243, 1822
XapI RAATTY 1 cut(s) 1906
XmiI GTMKAC 1 cut(s) 39
XspI CTAG 3 cut(s) 794, 1328, 1607
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.