RchiOBHm_Chr3g0481851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000497
Physical Location & Seq
Forward (+)
27979767 .. 27981034
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44676

Sequence Viewer

Length: 453 bp
ATGGATCCTCTTCCGCAAGAAGTCGACGATTACATCAGAGAGTCGATTGACCACACCCTCGGCCTCCCCGTGTCCGCACAGACTCTCGAATTGAAGCTCCGGTGCTCGGAAGCCGCGAAGCGACGGCTGCGCGACCAATACACGGTTCTACTCGCCAAATTGAAGGAGAAGGATCAAGCTCTGAACCGATCTAGGGCCGAGGCTTGTATGAACGCTCAGGCTTTGAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGTGCGCATCTGGTGAGTCAGTGTAACAAGTTGGAGAAGGAGTGCTCGCTTTATGATCATGACCGAGAGGCTTTGATGGATTTCGGAAACGAGGCAGACCAGAGGGCCAAGGAGGCTGAGTTTCGGGTCGAAGAGTTGGAGGATGAACTGGGAGAATTGTGGGAAGAATTGAAGTTTTACAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.5

Weight (kDa)

4.87

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 270
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 116, 132
AciI CCGC 4 cut(s) 14, 75, 114, 257
AclWI GGATC 2 cut(s) 12, 180
AfiI CCNNNNNNNGG 3 cut(s) 106, 142, 193
AgsI TTSAA 3 cut(s) 94, 163, 436
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
AluBI AGCT 2 cut(s) 97, 179
AluI AGCT 2 cut(s) 97, 179
Alw21I GWGCWC 2 cut(s) 107, 311
Alw26I GTCTC 1 cut(s) 244
AlwI GGATC 2 cut(s) 12, 180
AoxI GGCC 3 cut(s) 61, 195, 369
ApeKI GCWGC 1 cut(s) 127
AspLEI GCGC 2 cut(s) 132, 271
AspS9I GGNCC 2 cut(s) 195, 369
AsuHPI GGTGA 1 cut(s) 289
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 107, 311
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 140
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 244
BfaI CTAG 2 cut(s) 192, 254
BglI GCCNNNNNGGC 1 cut(s) 377
BisI GCNGC 3 cut(s) 114, 128, 258
BlsI GCNGC 3 cut(s) 115, 129, 259
BmgT120I GGNCC 2 cut(s) 195, 369
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 422
Bpu10I CCTNAGC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 58, 198, 372
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 4 cut(s) 290, 320, 368, 398
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 142, 193
Bse1I ACTGG 1 cut(s) 417
BseDI CCNNGG 3 cut(s) 58, 198, 372
BseGI GGATG 1 cut(s) 412
BseLI CCNNNNNNNGG 3 cut(s) 106, 142, 193
BseMII CTCAG 2 cut(s) 230, 372
BseNI ACTGG 1 cut(s) 417
BseRI GAGGAG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 114
Bsh1236I CGCG 2 cut(s) 116, 132
BshFI GGCC 3 cut(s) 63, 197, 371
BsiHKAI GWGCWC 2 cut(s) 107, 311
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 3 cut(s) 106, 142, 193
BsmAI GTCTC 1 cut(s) 244
BsnI GGCC 3 cut(s) 63, 197, 371
Bsp1286I GDGCHC 2 cut(s) 107, 311
Bsp143I GATC 4 cut(s) 4, 172, 188, 319
BspACI CCGC 4 cut(s) 14, 75, 114, 257
BspANI GGCC 3 cut(s) 63, 197, 371
BspCNI CTCAG 2 cut(s) 229, 373
BspFNI CGCG 2 cut(s) 116, 132
BspHI TCATGA 1 cut(s) 322
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 180
BsrI ACTGG 1 cut(s) 417
BssECI CCNNGG 3 cut(s) 58, 198, 372
BssMI GATC 4 cut(s) 4, 172, 188, 319
BssT1I CCWWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 15, 390
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 311
BstDEI CTNAG 2 cut(s) 216, 381
BstF5I GGATG 1 cut(s) 412
BstFNI CGCG 2 cut(s) 116, 132
BstHHI GCGC 2 cut(s) 132, 271
BstKTI GATC 4 cut(s) 7, 175, 191, 322
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 4 cut(s) 4, 172, 188, 319
BstMWI GCNNNNNNNGC 3 cut(s) 127, 266, 377
BstUI CGCG 2 cut(s) 116, 132
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 3 cut(s) 63, 197, 371
BtsCI GGATG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 290
Cac8I GCNNGC 1 cut(s) 311
CciI TCATGA 1 cut(s) 322
CfoI GCGC 2 cut(s) 132, 271
Cfr13I GGNCC 2 cut(s) 195, 369
CviAII CATG 1 cut(s) 323
DdeI CTNAG 2 cut(s) 216, 381
DpnI GATC 4 cut(s) 6, 174, 190, 321
DpnII GATC 4 cut(s) 4, 172, 188, 319
Eam1104I CTCTTC 2 cut(s) 15, 390
EarI CTCTTC 2 cut(s) 15, 390
Eco130I CCWWGG 1 cut(s) 372
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 1 cut(s) 326
FaiI YATR 3 cut(s) 209, 318, 324
FatI CATG 1 cut(s) 322
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 114, 128, 258
FokI GGATG 1 cut(s) 419
Fsp4HI GCNGC 3 cut(s) 114, 128, 258
FspAI RTGCGCAY 1 cut(s) 270
FspBI CTAG 2 cut(s) 192, 254
FspI TGCGCA 1 cut(s) 270
GlaI GCGC 2 cut(s) 131, 270
GluI GCNGC 3 cut(s) 114, 128, 258
HaeIII GGCC 3 cut(s) 63, 197, 371
HapII CCGG 1 cut(s) 100
HhaI GCGC 2 cut(s) 132, 271
Hin1II CATG 1 cut(s) 326
Hin6I GCGC 2 cut(s) 130, 269
HinP1I GCGC 2 cut(s) 130, 269
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 4 cut(s) 41, 82, 244, 280
HpaII CCGG 1 cut(s) 100
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 5 cut(s) 38, 109, 183, 249, 350
Hpy188III TCNNGA 2 cut(s) 86, 323
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 2 cut(s) 29, 126
HpyAV CCTTC 3 cut(s) 157, 163, 295
HpyCH4III ACNGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 266, 377
HpyF3I CTNAG 2 cut(s) 216, 381
Hsp92II CATG 1 cut(s) 326
HspAI GCGC 2 cut(s) 130, 269
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 4 cut(s) 4, 172, 188, 319
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 5 cut(s) 113, 203, 260, 377, 398
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 280
MaeI CTAG 2 cut(s) 192, 254
MaeIII GTNAC 1 cut(s) 287
MalI GATC 4 cut(s) 6, 174, 190, 321
MboI GATC 4 cut(s) 4, 172, 188, 319
MboII GAAGA 2 cut(s) 407, 440
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 107, 311
MluCI AATT 4 cut(s) 89, 158, 419, 431
MlyI GAGTC 3 cut(s) 50, 76, 289
MmeI TCCRAC 2 cut(s) 276, 381
MspI CCGG 1 cut(s) 100
MvnI CGCG 2 cut(s) 116, 132
MwoI GCNNNNNNNGC 3 cut(s) 127, 266, 377
NdeII GATC 4 cut(s) 4, 172, 188, 319
NlaIII CATG 1 cut(s) 326
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 2 cut(s) 39, 223
NsbI TGCGCA 1 cut(s) 270
PagI TCATGA 1 cut(s) 322
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 113
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 3 cut(s) 115, 129, 259
PleI GAGTC 3 cut(s) 49, 76, 288
PpsI GAGTC 3 cut(s) 49, 76, 288
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 195, 369
PsuI RGATCY 1 cut(s) 4
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 3 cut(s) 114, 128, 258
Sau3AI GATC 4 cut(s) 4, 172, 188, 319
Sau96I GGNCC 2 cut(s) 195, 369
SchI GAGTC 3 cut(s) 50, 76, 289
SduI GDGCHC 2 cut(s) 107, 311
SetI ASST 2 cut(s) 99, 181
SfaNI GCATC 1 cut(s) 280
Sse9I AATT 4 cut(s) 89, 158, 419, 431
SsiI CCGC 4 cut(s) 14, 75, 114, 257
SspMI CTAG 2 cut(s) 192, 254
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 4 cut(s) 24, 44, 87, 393
TaqII GACCGA 1 cut(s) 342
TasI AATT 4 cut(s) 89, 158, 419, 431
TauI GCSGC 2 cut(s) 116, 260
TfiI GAWTC 1 cut(s) 244
TscAI CASTG 1 cut(s) 290
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 2 cut(s) 224, 423
TspRI CASTG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 2 cut(s) 192, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.