Rroxscaffold_153G00436710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000153
OG0000497
Physical Location & Seq
Reverse (-)
258406 .. 258811
406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_153G00436710.1

Sequence Viewer

Length: 318 bp
ATGGATCCTCTTCCGCAAGAAGTCTACGATTTCATCAGAGAGTCGATTGACCACACCCTCGGCCTCCCCGTGTCCGCACAGACTCTCGAATTGAAGAAGATCCGGTGCTCGGAAGCCGCGAAGCAACCGCTGCGCGACCAGTACACGGCCGAGGTTTGTATGAACGCTCAGGCTTTGAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGTGCGCATCTGGTGAGTCAGTTTAACAAGTTGGAGAAGGAGTGCTCGCTCTATGATCATGACCGAGAGGCTTTGATGGATTTCGGAAACGAGGCAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.06

Weight (kDa)

4.81

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 222
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 119, 135
AciI CCGC 5 cut(s) 14, 75, 117, 128, 209
AclWI GGATC 2 cut(s) 12, 94
AcoI YGGCCR 1 cut(s) 147
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 109, 145
AgsI TTSAA 1 cut(s) 94
Alw21I GWGCWC 2 cut(s) 110, 263
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 2 cut(s) 12, 94
AoxI GGCC 2 cut(s) 61, 147
ApeKI GCWGC 1 cut(s) 130
AspLEI GCGC 2 cut(s) 135, 223
AsuHPI GGTGA 1 cut(s) 241
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 110, 263
BbvI GCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 286
BceAI ACGGC 1 cut(s) 162
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 2 cut(s) 206, 316
BisI GCNGC 3 cut(s) 117, 131, 210
BlsI GCNGC 3 cut(s) 118, 132, 211
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 232
Bpu10I CCTNAGC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 58, 150
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 145
Bse1I ACTGG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 58, 150
BseLI CCNNNNNNNGG 2 cut(s) 109, 145
BseMII CTCAG 1 cut(s) 182
BseNI ACTGG 1 cut(s) 139
BseRI GAGGAG 1 cut(s) 206
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 117
Bsh1236I CGCG 2 cut(s) 119, 135
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 2 cut(s) 63, 149
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 110, 263
BsiSI CCGG 1 cut(s) 103
BslI CCNNNNNNNGG 2 cut(s) 109, 145
BsmAI GTCTC 1 cut(s) 196
BsnI GGCC 2 cut(s) 63, 149
Bsp1286I GDGCHC 2 cut(s) 110, 263
Bsp143I GATC 3 cut(s) 4, 99, 271
BspACI CCGC 5 cut(s) 14, 75, 117, 128, 209
BspANI GGCC 2 cut(s) 63, 149
BspCNI CTCAG 1 cut(s) 181
BspFNI CGCG 2 cut(s) 119, 135
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 94
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 58, 150
BssMI GATC 3 cut(s) 4, 99, 271
Bst6I CTCTTC 1 cut(s) 15
BstAPI GCANNNNNTGC 2 cut(s) 130, 218
BstC8I GCNNGC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 168
BstFNI CGCG 2 cut(s) 119, 135
BstHHI GCGC 2 cut(s) 135, 223
BstKTI GATC 3 cut(s) 7, 102, 274
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 3 cut(s) 4, 99, 271
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 2 cut(s) 130, 218
BstUI CGCG 2 cut(s) 119, 135
BstV1I GCAGC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 4, 99
BstYI RGATCY 2 cut(s) 4, 99
BstZI CGGCCG 1 cut(s) 147
BsuRI GGCC 2 cut(s) 63, 149
Cac8I GCNNGC 1 cut(s) 263
CciI TCATGA 1 cut(s) 274
CfoI GCGC 2 cut(s) 135, 223
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 275
CviJI RGCY 5 cut(s) 63, 116, 149, 173, 287
CviKI_1 RGCY 5 cut(s) 63, 116, 149, 173, 287
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 168
DpnI GATC 3 cut(s) 6, 101, 273
DpnII GATC 3 cut(s) 4, 99, 271
EaeI YGGCCR 1 cut(s) 147
EagI CGGCCG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EclXI CGGCCG 1 cut(s) 147
Eco52I CGGCCG 1 cut(s) 147
FaeI CATG 1 cut(s) 278
FaiI YATR 3 cut(s) 161, 270, 276
FatI CATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 117, 131, 210
Fsp4HI GCNGC 3 cut(s) 117, 131, 210
FspAI RTGCGCAY 1 cut(s) 222
FspBI CTAG 2 cut(s) 206, 316
FspI TGCGCA 1 cut(s) 222
GlaI GCGC 2 cut(s) 134, 222
GluI GCNGC 3 cut(s) 117, 131, 210
HaeIII GGCC 2 cut(s) 63, 149
HapII CCGG 1 cut(s) 103
HhaI GCGC 2 cut(s) 135, 223
Hin1II CATG 1 cut(s) 278
Hin6I GCGC 2 cut(s) 133, 221
HinP1I GCGC 2 cut(s) 133, 221
HinfI GANTC 4 cut(s) 41, 82, 196, 232
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 25, 144
Hpy188I TCNGA 4 cut(s) 38, 112, 201, 302
Hpy188III TCNNGA 2 cut(s) 86, 275
Hpy8I GTNNAC 2 cut(s) 25, 144
HpyAV CCTTC 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 218
HpyF3I CTNAG 1 cut(s) 168
Hsp92II CATG 1 cut(s) 278
HspAI GCGC 2 cut(s) 133, 221
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 3 cut(s) 4, 99, 271
LpnPI CCDG 4 cut(s) 116, 152, 155, 212
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 206, 316
MalI GATC 3 cut(s) 6, 101, 273
MboI GATC 3 cut(s) 4, 99, 271
MboII GAAGA 2 cut(s) 106, 109
MflI RGATCY 2 cut(s) 4, 99
MhlI GDGCHC 2 cut(s) 110, 263
MluCI AATT 1 cut(s) 89
MlyI GAGTC 3 cut(s) 50, 76, 241
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 8 cut(s) 18, 68, 74, 145, 171, 184, 277, 301
MseI TTAA 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 1 cut(s) 103
MvnI CGCG 2 cut(s) 119, 135
MwoI GCNNNNNNNGC 2 cut(s) 130, 218
NdeII GATC 3 cut(s) 4, 99, 271
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 2 cut(s) 39, 175
NsbI TGCGCA 1 cut(s) 222
PagI TCATGA 1 cut(s) 274
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 116
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 3 cut(s) 118, 132, 211
PleI GAGTC 3 cut(s) 49, 76, 240
PpsI GAGTC 3 cut(s) 49, 76, 240
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 4, 99
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 240
SatI GCNGC 3 cut(s) 117, 131, 210
Sau3AI GATC 3 cut(s) 4, 99, 271
SchI GAGTC 3 cut(s) 50, 76, 241
SduI GDGCHC 2 cut(s) 110, 263
SetI ASST 1 cut(s) 156
SfaNI GCATC 1 cut(s) 232
Sse9I AATT 1 cut(s) 89
SsiI CCGC 5 cut(s) 14, 75, 117, 128, 209
SspMI CTAG 2 cut(s) 206, 316
TaqI TCGA 2 cut(s) 44, 87
TaqII GACCGA 1 cut(s) 294
TasI AATT 1 cut(s) 89
TatI WGTACW 1 cut(s) 141
TauI GCSGC 2 cut(s) 119, 212
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 22, 176
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 2 cut(s) 206, 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.