Rorug07G0311100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000497
Physical Location & Seq
Forward (+)
31167313 .. 31167924
612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0311100.1

Sequence Viewer

Length: 333 bp
ATGAAATTGCTGAGATTTGGATATGAAAATTTGAATCTTTTGACATGTAGGACTGCGGTTGAGATTGAGAAGAAAACACGAGCTAGTAACCTTGAGCATCGTCAAGCTATGGAGAATTATATGGCTAAGTTGGCTCTCGAAATCGAAAAACTTCATGGGGAGTTGGCAAATGCAGAGAAGAGAGCAAGGGCTGCAGTAGCAGCTGCAAATCCAGGTTGTTGTTTGGTTGCAGGTTCTGGGTACCCTATGGCTTATGGCAATGCCGAAATGCTATATGGAGGAAATGCATACCCTGACCCCTATGCCATGCATCAGGAAAATCTGAGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.21

Weight (kDa)

7.72

Isoelectric Point (pI)

38.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 221
Acc65I GGTACC 1 cut(s) 240
AccB1I GGYRCC 1 cut(s) 240
AciI CCGC 1 cut(s) 56
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 44
AgsI TTSAA 1 cut(s) 34
AjnI CCWGG 1 cut(s) 211
AluBI AGCT 3 cut(s) 83, 107, 203
AluI AGCT 3 cut(s) 83, 107, 203
Alw26I GTCTC 1 cut(s) 319
AlwNI CAGNNNCTG 1 cut(s) 236
ApeKI GCWGC 3 cut(s) 191, 200, 203
ApoI RAATTY 1 cut(s) 28
Asp700I GAANNNNTTC 1 cut(s) 150
Asp718I GGTACC 1 cut(s) 240
BanI GGYRCC 1 cut(s) 240
BauI CACGAG 1 cut(s) 78
BbvI GCAGC 3 cut(s) 178, 190, 212
BciT130I CCWGG 1 cut(s) 213
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 192
BfuAI ACCTGC 1 cut(s) 221
BisI GCNGC 3 cut(s) 192, 201, 204
BlsI GCNGC 3 cut(s) 193, 202, 205
Bme1390I CCNGG 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 213
BmsI GCATC 2 cut(s) 106, 319
BpuEI CTTGAG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 213
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 178, 190, 212
BshNI GGYRCC 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 319
BspACI CCGC 1 cut(s) 56
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 242
BspMAI CTGCAG 1 cut(s) 196
BspMI ACCTGC 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 240
BsrDI GCAATG 1 cut(s) 265
BssSI CACGAG 1 cut(s) 78
Bst2BI CACGAG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 213
Bst6I CTCTTC 1 cut(s) 173
BstAPI GCANNNNNTGC 1 cut(s) 191
BstDEI CTNAG 3 cut(s) 11, 126, 323
BstMAI GTCTC 1 cut(s) 319
BstMWI GCNNNNNNNGC 4 cut(s) 131, 191, 197, 200
BstNI CCWGG 1 cut(s) 213
BstNSI RCATGY 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 211
BstSFI CTRYAG 1 cut(s) 192
BstV1I GCAGC 3 cut(s) 178, 190, 212
BveI ACCTGC 1 cut(s) 221
CaiI CAGNNNCTG 1 cut(s) 236
Csp6I GTAC 1 cut(s) 241
CviAII CATG 3 cut(s) 45, 155, 307
CviJI RGCY 7 cut(s) 83, 107, 125, 134, 191, 203, 251
CviKI_1 RGCY 7 cut(s) 83, 107, 125, 134, 191, 203, 251
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 3 cut(s) 11, 126, 323
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 211
EcoT22I ATGCAT 2 cut(s) 289, 312
FaeI CATG 3 cut(s) 48, 158, 310
FatI CATG 3 cut(s) 44, 154, 306
Fnu4HI GCNGC 3 cut(s) 192, 201, 204
Fsp4HI GCNGC 3 cut(s) 192, 201, 204
FspBI CTAG 1 cut(s) 84
GluI GCNGC 3 cut(s) 192, 201, 204
Hin1II CATG 3 cut(s) 48, 158, 310
HinfI GANTC 1 cut(s) 34
Hpy188I TCNGA 1 cut(s) 324
Hpy188III TCNNGA 2 cut(s) 137, 314
HpyCH4V TGCA 6 cut(s) 173, 194, 206, 230, 287, 310
HpyF10VI GCNNNNNNNGC 4 cut(s) 131, 191, 197, 200
HpyF3I CTNAG 3 cut(s) 11, 126, 323
Hsp92II CATG 3 cut(s) 48, 158, 310
KpnI GGTACC 1 cut(s) 244
LpnPI CCDG 6 cut(s) 198, 216, 222, 225, 299, 306
Lsp1109I GCAGC 3 cut(s) 178, 190, 212
LweI GCATC 2 cut(s) 106, 319
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 86
MboII GAAGA 2 cut(s) 82, 190
MluCI AATT 3 cut(s) 5, 28, 115
MnlI CCTC 1 cut(s) 272
Mph1103I ATGCAT 2 cut(s) 289, 312
MroXI GAANNNNTTC 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 213
MvaI CCWGG 1 cut(s) 213
MwoI GCNNNNNNNGC 4 cut(s) 131, 191, 197, 200
NlaIII CATG 3 cut(s) 48, 158, 310
NlaIV GGNNCC 1 cut(s) 242
NsiI ATGCAT 2 cut(s) 289, 312
NspI RCATGY 1 cut(s) 48
PciI ACATGT 1 cut(s) 44
PdmI GAANNNNTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 3 cut(s) 193, 202, 205
PscI ACATGT 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 196
PstNI CAGNNNCTG 1 cut(s) 236
PvuII CAGCTG 1 cut(s) 203
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SatI GCNGC 3 cut(s) 192, 201, 204
ScrFI CCNGG 1 cut(s) 213
SetI ASST 6 cut(s) 85, 93, 109, 205, 217, 235
SfaNI GCATC 2 cut(s) 106, 319
SfcI CTRYAG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 3 cut(s) 5, 28, 115
SsiI CCGC 1 cut(s) 56
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 211
TaqI TCGA 2 cut(s) 138, 144
TasI AATT 3 cut(s) 5, 28, 115
TfiI GAWTC 1 cut(s) 34
TseI GCWGC 3 cut(s) 191, 200, 203
TspDTI ATGAA 3 cut(s) 17, 39, 143
XapI RAATTY 1 cut(s) 28
XceI RCATGY 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 150
XspI CTAG 1 cut(s) 84
Zsp2I ATGCAT 2 cut(s) 289, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.