RLG00000034299

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000497
Physical Location & Seq
Forward (+)
40231783 .. 40234149
2367 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034299

Sequence Viewer

Length: 594 bp
ATGGATCCTCTTCCGCAAGAAGTCGGCGATTACATCAGAGAGTCGATTGACCACACCCTCGGCCTCCCCGTGTCCGCACAGACTCTCGAATTGAAGCTCCGGTGCTCGGAAGCCTCGAAGCGACGGCTGCGCGACCAGTACACGGTTCTACTCGCCAAATTGAAGGAGAAGGATCAAGCTCTGGACCGATCTAGGGTTCGTGCGCCGAGGCTTTGTATGAACGCTCAGGCTTTGAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGTGCGCATCTGGTGAGTCAGTGTAACAAGTTGGAGAAGGAGTGCTCGCTCTATGATCATGGCCGAGAGGCTTTGATGGATTTCGGAAACGAGGCAGACCAGAGGGCCAAGGAGGCTGAGTTTCGGGTTGAAGAGTTGGAGGATGAACTGGGAGAATTGAGGGAAGAATTGAAGTTTTACAAGAATGAATACGAGAGGCTTTCGGTTGATTCATCTGCTGAAGGCTCACCTGTTGAAGAGAAACTAGTGGAGTCTGTTTTAGCAACATCGACCAAAGATGAGACTGGGGCGGCATGTGCATTTTTGGAGGCCAATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

22.38

Weight (kDa)

4.89

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 279
AccII CGCG 1 cut(s) 132
AciI CCGC 4 cut(s) 14, 75, 266, 563
AclWI GGATC 2 cut(s) 12, 180
AcoI YGGCCR 1 cut(s) 334
AcuI CTGAAG 1 cut(s) 513
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 106, 142, 193
AgsI TTSAA 5 cut(s) 94, 163, 404, 445, 509
AhlI ACTAGT 1 cut(s) 517
AluBI AGCT 3 cut(s) 97, 179, 591
AluI AGCT 3 cut(s) 97, 179, 591
Alw21I GWGCWC 2 cut(s) 107, 320
Alw26I GTCTC 2 cut(s) 253, 548
AlwI GGATC 2 cut(s) 12, 180
AoxI GGCC 4 cut(s) 61, 334, 378, 582
ApeKI GCWGC 1 cut(s) 127
AspLEI GCGC 3 cut(s) 132, 205, 280
AspS9I GGNCC 2 cut(s) 184, 378
AsuHPI GGTGA 2 cut(s) 298, 492
AvaII GGWCC 1 cut(s) 184
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 107, 320
BbvI GCAGC 1 cut(s) 114
BccI CCATC 1 cut(s) 343
BceAI ACGGC 1 cut(s) 140
BclI TGATCA 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 253, 548
BcuI ACTAGT 1 cut(s) 517
BfaI CTAG 3 cut(s) 192, 263, 518
BglI GCCNNNNNGGC 1 cut(s) 386
BisI GCNGC 3 cut(s) 128, 267, 564
BlsI GCNGC 3 cut(s) 129, 268, 565
Bme18I GGWCC 1 cut(s) 184
BmgT120I GGNCC 2 cut(s) 184, 378
BmiI GGNNCC 1 cut(s) 6
BmrI ACTGGG 2 cut(s) 431, 567
BmsI GCATC 1 cut(s) 289
BmuI ACTGGG 2 cut(s) 431, 567
Bpu10I CCTNAGC 1 cut(s) 225
BsaJI CCNNGG 3 cut(s) 58, 206, 381
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 4 cut(s) 299, 329, 377, 407
Bsc4I CCNNNNNNNGG 3 cut(s) 106, 142, 193
Bse1I ACTGG 3 cut(s) 136, 426, 562
BseDI CCNNGG 3 cut(s) 58, 206, 381
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 3 cut(s) 106, 142, 193
BseMII CTCAG 2 cut(s) 239, 381
BseNI ACTGG 3 cut(s) 136, 426, 562
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 114
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 4 cut(s) 63, 336, 380, 584
BsiHKAI GWGCWC 2 cut(s) 107, 320
BsiSI CCGG 1 cut(s) 100
BslI CCNNNNNNNGG 3 cut(s) 106, 142, 193
BsmAI GTCTC 2 cut(s) 253, 548
BsnI GGCC 4 cut(s) 63, 336, 380, 584
Bsp1286I GDGCHC 2 cut(s) 107, 320
Bsp143I GATC 4 cut(s) 4, 172, 188, 328
BspACI CCGC 4 cut(s) 14, 75, 266, 563
BspANI GGCC 4 cut(s) 63, 336, 380, 584
BspCNI CTCAG 2 cut(s) 238, 382
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 12, 180
BsrI ACTGG 3 cut(s) 136, 426, 562
BssECI CCNNGG 3 cut(s) 58, 206, 381
BssMI GATC 4 cut(s) 4, 172, 188, 328
BssT1I CCWWGG 1 cut(s) 381
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 3 cut(s) 15, 399, 504
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 2 cut(s) 225, 390
BstF5I GGATG 1 cut(s) 421
BstFNI CGCG 1 cut(s) 132
BstHHI GCGC 3 cut(s) 132, 205, 280
BstKTI GATC 4 cut(s) 7, 175, 191, 331
BstMAI GTCTC 2 cut(s) 253, 548
BstMBI GATC 4 cut(s) 4, 172, 188, 328
BstMWI GCNNNNNNNGC 4 cut(s) 127, 275, 386, 569
BstNSI RCATGY 1 cut(s) 570
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 4 cut(s) 63, 336, 380, 584
BtsCI GGATG 1 cut(s) 421
BtsIMutI CAGTG 1 cut(s) 299
Cac8I GCNNGC 1 cut(s) 320
CfoI GCGC 3 cut(s) 132, 205, 280
Cfr13I GGNCC 2 cut(s) 184, 378
Csp6I GTAC 1 cut(s) 139
CviAII CATG 2 cut(s) 332, 567
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 2 cut(s) 225, 390
DpnI GATC 4 cut(s) 6, 174, 190, 330
DpnII GATC 4 cut(s) 4, 172, 188, 328
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 3 cut(s) 15, 399, 504
EarI CTCTTC 3 cut(s) 15, 399, 504
Eco130I CCWWGG 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 513
EcoT14I CCWWGG 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 381
FaeI CATG 2 cut(s) 335, 570
FaiI YATR 4 cut(s) 218, 327, 333, 568
FatI CATG 2 cut(s) 331, 566
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 3 cut(s) 128, 267, 564
FokI GGATG 1 cut(s) 428
Fsp4HI GCNGC 3 cut(s) 128, 267, 564
FspAI RTGCGCAY 1 cut(s) 279
FspBI CTAG 3 cut(s) 192, 263, 518
FspI TGCGCA 1 cut(s) 279
GlaI GCGC 3 cut(s) 131, 204, 279
GluI GCNGC 3 cut(s) 128, 267, 564
HaeIII GGCC 4 cut(s) 63, 336, 380, 584
HapII CCGG 1 cut(s) 100
HhaI GCGC 3 cut(s) 132, 205, 280
Hin1II CATG 2 cut(s) 335, 570
Hin6I GCGC 3 cut(s) 130, 203, 278
HinP1I GCGC 3 cut(s) 130, 203, 278
HinfI GANTC 6 cut(s) 41, 82, 253, 289, 482, 524
HpaII CCGG 1 cut(s) 100
HphI GGTGA 2 cut(s) 298, 492
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 4 cut(s) 38, 109, 258, 359
Hpy188III TCNNGA 2 cut(s) 86, 182
Hpy8I GTNNAC 1 cut(s) 141
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 4 cut(s) 157, 163, 304, 488
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4V TGCA 1 cut(s) 572
HpyF10VI GCNNNNNNNGC 4 cut(s) 127, 275, 386, 569
HpyF3I CTNAG 2 cut(s) 225, 390
Hsp92II CATG 2 cut(s) 335, 570
HspAI GCGC 3 cut(s) 130, 203, 278
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 4, 172, 188, 328
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 9 cut(s) 113, 149, 167, 212, 269, 386, 407, 516, 543
Lsp1109I GCAGC 1 cut(s) 114
LweI GCATC 1 cut(s) 289
MaeI CTAG 3 cut(s) 192, 263, 518
MaeIII GTNAC 1 cut(s) 296
MalI GATC 4 cut(s) 6, 174, 190, 330
MboI GATC 4 cut(s) 4, 172, 188, 328
MboII GAAGA 3 cut(s) 416, 449, 521
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 107, 320
MluCI AATT 4 cut(s) 89, 158, 428, 440
MlyI GAGTC 4 cut(s) 50, 76, 298, 533
MmeI TCCRAC 2 cut(s) 285, 390
MspI CCGG 1 cut(s) 100
MvnI CGCG 1 cut(s) 132
MwoI GCNNNNNNNGC 4 cut(s) 127, 275, 386, 569
NdeII GATC 4 cut(s) 4, 172, 188, 328
NlaIII CATG 2 cut(s) 335, 570
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 3 cut(s) 39, 231, 362
NsbI TGCGCA 1 cut(s) 279
NspI RCATGY 1 cut(s) 570
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 113
PfeI GAWTC 2 cut(s) 253, 482
PkrI GCNGC 3 cut(s) 129, 268, 565
PleI GAGTC 4 cut(s) 49, 76, 297, 532
PpsI GAGTC 4 cut(s) 49, 76, 297, 532
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 184, 378
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SatI GCNGC 3 cut(s) 128, 267, 564
Sau3AI GATC 4 cut(s) 4, 172, 188, 328
Sau96I GGNCC 2 cut(s) 184, 378
SchI GAGTC 4 cut(s) 50, 76, 298, 533
SduI GDGCHC 2 cut(s) 107, 320
SetI ASST 4 cut(s) 99, 181, 505, 593
SfaNI GCATC 1 cut(s) 289
SinI GGWCC 1 cut(s) 184
SpeI ACTAGT 1 cut(s) 517
Sse9I AATT 4 cut(s) 89, 158, 428, 440
SsiI CCGC 4 cut(s) 14, 75, 266, 563
SspMI CTAG 3 cut(s) 192, 263, 518
StyI CCWWGG 1 cut(s) 381
TaaI ACNGT 1 cut(s) 145
TaqI TCGA 4 cut(s) 44, 87, 116, 542
TaqII GACCGA 1 cut(s) 201
TasI AATT 4 cut(s) 89, 158, 428, 440
TatI WGTACW 1 cut(s) 138
TauI GCSGC 2 cut(s) 269, 566
TfiI GAWTC 2 cut(s) 253, 482
TscAI CASTG 1 cut(s) 299
TseI GCWGC 1 cut(s) 127
TspDTI ATGAA 4 cut(s) 233, 432, 474, 474
TspRI CASTG 1 cut(s) 299
VpaK11BI GGWCC 1 cut(s) 184
XceI RCATGY 1 cut(s) 570
XspI CTAG 3 cut(s) 192, 263, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.