Rmu_sc0005102.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005102.1
OG0000497
Physical Location & Seq
Reverse (-)
1 .. 2552
2552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005102.1_g000001.1.cds

Sequence Viewer

Length: 606 bp
atgaaatcttcgaccacctctttggggacctccggcaaagttttcagaataatcctatgggcggcggccagtgacagaaatccagcgaccggtgatcggattcaagcgaagttggctggaatctggcgacaggcaagaatggatccgcttccgcaagaagtcgacgattacatcagagagtcgattgaccacacccttggcctccccgtgtccacgcagactctcgagttgaagctccggtgctcggaagccgcgaggcgacggctgcgcgaccagtacacggttctactcgccaaattgaaagagaaggatcaagctctggagcgatctagggccgaggcttgtatgaacgctcaggctttgaggaagtttgtggaggagaatcagagactagcggcggagtgtgcgcatctggtgagccagtgcaacaagttggagaaggagtgctcgctctatgatcatgaccgagaggctttgatggatttcgggaacgaggcggaccagagggccaaggaggctgagtttcgggtcgaagagttggaggatgaactgggagaattgagggaagatttgaagttttacaagaatgaatacgagaggctttcg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

23.27

Weight (kDa)

5.45

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 408
AccI GTMKAC 1 cut(s) 162
AccII CGCG 2 cut(s) 254, 270
AciI CCGC 8 cut(s) 62, 65, 146, 152, 252, 395, 398, 497
AclWI GGATC 3 cut(s) 137, 150, 318
AcoI YGGCCR 1 cut(s) 66
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 6 cut(s) 24, 61, 89, 96, 244, 280
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 4 cut(s) 104, 232, 301, 574
AluBI AGCT 2 cut(s) 235, 317
AluI AGCT 2 cut(s) 235, 317
Alw21I GWGCWC 2 cut(s) 245, 449
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 3 cut(s) 137, 150, 318
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 4 cut(s) 66, 199, 333, 507
ApeKI GCWGC 1 cut(s) 265
ArsI GACNNNNNNTTYG 1 cut(s) 36
AsiGI ACCGGT 1 cut(s) 89
AspLEI GCGC 2 cut(s) 270, 409
AspS9I GGNCC 4 cut(s) 27, 333, 499, 507
AsuHPI GGTGA 2 cut(s) 104, 427
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 2 cut(s) 27, 499
BamHI GGATCC 1 cut(s) 142
Bbv12I GWGCWC 2 cut(s) 245, 449
BbvI GCAGC 1 cut(s) 252
BccI CCATC 1 cut(s) 472
BceAI ACGGC 1 cut(s) 278
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 2 cut(s) 330, 392
BglI GCCNNNNNGGC 1 cut(s) 515
BisI GCNGC 5 cut(s) 63, 66, 252, 266, 396
BlsI GCNGC 5 cut(s) 64, 67, 253, 267, 397
Bme18I GGWCC 2 cut(s) 27, 499
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 4 cut(s) 27, 333, 499, 507
BmiI GGNNCC 2 cut(s) 28, 144
BmrI ACTGGG 1 cut(s) 560
BmsI GCATC 1 cut(s) 418
BmuI ACTGGG 1 cut(s) 560
BpmI CTGGAG 1 cut(s) 341
Bpu10I CCTNAGC 1 cut(s) 354
BsaJI CCNNGG 3 cut(s) 196, 336, 510
BsaWI WCCGGW 2 cut(s) 89, 237
BsaXI ACNNNNNCTCC 4 cut(s) 428, 458, 506, 536
Bsc4I CCNNNNNNNGG 6 cut(s) 24, 61, 89, 96, 244, 280
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 4 cut(s) 69, 274, 421, 555
BseDI CCNNGG 3 cut(s) 196, 336, 510
BseGI GGATG 1 cut(s) 550
BseLI CCNNNNNNNGG 6 cut(s) 24, 61, 89, 96, 244, 280
BseMII CTCAG 2 cut(s) 368, 510
BseNI ACTGG 4 cut(s) 69, 274, 421, 555
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 252
Bsh1236I CGCG 2 cut(s) 254, 270
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 4 cut(s) 68, 201, 335, 509
BshTI ACCGGT 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 245, 449
BsiHKCI CYCGRG 1 cut(s) 224
BsiSI CCGG 3 cut(s) 33, 90, 238
BslFI GGGAC 1 cut(s) 40
BslI CCNNNNNNNGG 6 cut(s) 24, 61, 89, 96, 244, 280
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 4 cut(s) 68, 201, 335, 509
BsoBI CYCGRG 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 245, 449
Bsp143I GATC 5 cut(s) 94, 142, 310, 326, 457
BspACI CCGC 8 cut(s) 62, 65, 146, 152, 252, 395, 398, 497
BspANI GGCC 4 cut(s) 68, 201, 335, 509
BspCNI CTCAG 2 cut(s) 367, 511
BspFNI CGCG 2 cut(s) 254, 270
BspHI TCATGA 1 cut(s) 460
BspLI GGNNCC 2 cut(s) 28, 144
BspPI GGATC 3 cut(s) 137, 150, 318
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 4 cut(s) 69, 274, 421, 555
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 3 cut(s) 196, 336, 510
BssMI GATC 5 cut(s) 94, 142, 310, 326, 457
BssT1I CCWWGG 2 cut(s) 196, 510
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 528
BstC8I GCNNGC 1 cut(s) 449
BstDEI CTNAG 2 cut(s) 354, 519
BstF5I GGATG 1 cut(s) 550
BstFNI CGCG 2 cut(s) 254, 270
BstHHI GCGC 2 cut(s) 270, 409
BstKTI GATC 5 cut(s) 97, 145, 313, 329, 460
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 5 cut(s) 94, 142, 310, 326, 457
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 4 cut(s) 113, 265, 404, 515
BstUI CGCG 2 cut(s) 254, 270
BstV1I GCAGC 1 cut(s) 252
BstX2I RGATCY 1 cut(s) 142
BstXI CCANNNNNNTGG 2 cut(s) 22, 197
BstYI RGATCY 1 cut(s) 142
BsuRI GGCC 4 cut(s) 68, 201, 335, 509
BtsCI GGATG 1 cut(s) 550
BtsIMutI CAGTG 2 cut(s) 76, 428
Cac8I GCNNGC 1 cut(s) 449
CciI TCATGA 1 cut(s) 460
CfoI GCGC 2 cut(s) 270, 409
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 4 cut(s) 27, 333, 499, 507
Csp6I GTAC 1 cut(s) 277
CspAI ACCGGT 1 cut(s) 89
CviAII CATG 1 cut(s) 461
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 354, 519
DpnI GATC 5 cut(s) 96, 144, 312, 328, 459
DpnII GATC 5 cut(s) 94, 142, 310, 326, 457
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
EciI GGCGGA 2 cut(s) 413, 512
Eco130I CCWWGG 2 cut(s) 196, 510
Eco47I GGWCC 2 cut(s) 27, 499
Eco88I CYCGRG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 27
EcoT14I CCWWGG 2 cut(s) 196, 510
ErhI CCWWGG 2 cut(s) 196, 510
FaeI CATG 1 cut(s) 464
FaiI YATR 4 cut(s) 58, 347, 456, 462
FaqI GGGAC 1 cut(s) 40
FatI CATG 1 cut(s) 460
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 5 cut(s) 63, 66, 252, 266, 396
FokI GGATG 1 cut(s) 557
Fsp4HI GCNGC 5 cut(s) 63, 66, 252, 266, 396
FspAI RTGCGCAY 1 cut(s) 408
FspBI CTAG 2 cut(s) 330, 392
FspI TGCGCA 1 cut(s) 408
GlaI GCGC 2 cut(s) 269, 408
GluI GCNGC 5 cut(s) 63, 66, 252, 266, 396
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 4 cut(s) 68, 201, 335, 509
HapII CCGG 3 cut(s) 33, 90, 238
HhaI GCGC 2 cut(s) 270, 409
Hin1II CATG 1 cut(s) 464
Hin6I GCGC 2 cut(s) 268, 407
HinP1I GCGC 2 cut(s) 268, 407
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HinfI GANTC 5 cut(s) 100, 120, 179, 220, 382
HpaII CCGG 3 cut(s) 33, 90, 238
HphI GGTGA 2 cut(s) 104, 427
Hpy166II GTNNAC 3 cut(s) 163, 213, 279
Hpy188I TCNGA 5 cut(s) 47, 99, 176, 247, 387
Hpy188III TCNNGA 4 cut(s) 224, 320, 461, 487
Hpy8I GTNNAC 3 cut(s) 163, 213, 279
Hpy99I CGWCG 2 cut(s) 167, 264
HpyAV CCTTC 2 cut(s) 301, 433
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 1 cut(s) 426
HpyF10VI GCNNNNNNNGC 4 cut(s) 113, 265, 404, 515
HpyF3I CTNAG 2 cut(s) 354, 519
Hsp92II CATG 1 cut(s) 464
HspAI GCGC 2 cut(s) 268, 407
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 5 cut(s) 94, 142, 310, 326, 457
LmnI GCTCC 2 cut(s) 240, 322
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 418
MaeI CTAG 2 cut(s) 330, 392
MaeIII GTNAC 1 cut(s) 71
MalI GATC 5 cut(s) 96, 144, 312, 328, 459
MboI GATC 5 cut(s) 94, 142, 310, 326, 457
MboII GAAGA 2 cut(s) 545, 578
MflI RGATCY 1 cut(s) 142
MhlI GDGCHC 2 cut(s) 245, 449
MluCI AATT 2 cut(s) 296, 557
MlyI GAGTC 2 cut(s) 188, 214
MmeI TCCRAC 2 cut(s) 414, 519
MspI CCGG 3 cut(s) 33, 90, 238
MvnI CGCG 2 cut(s) 254, 270
MwoI GCNNNNNNNGC 4 cut(s) 113, 265, 404, 515
NdeII GATC 5 cut(s) 94, 142, 310, 326, 457
NlaIII CATG 1 cut(s) 464
NlaIV GGNNCC 2 cut(s) 28, 144
NmeAIII GCCGAG 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 71
NsbI TGCGCA 1 cut(s) 408
PaeR7I CTCGAG 1 cut(s) 224
PagI TCATGA 1 cut(s) 460
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PfeI GAWTC 3 cut(s) 100, 120, 382
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 5 cut(s) 64, 67, 253, 267, 397
PleI GAGTC 2 cut(s) 187, 214
PpsI GAGTC 2 cut(s) 187, 214
PpuMI RGGWCCY 1 cut(s) 27
Psp5II RGGWCCY 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 28, 144
PspPI GGNCC 4 cut(s) 27, 333, 499, 507
PspPPI RGGWCCY 1 cut(s) 27
PsuI RGATCY 1 cut(s) 142
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SalI GTCGAC 1 cut(s) 161
SatI GCNGC 5 cut(s) 63, 66, 252, 266, 396
Sau3AI GATC 5 cut(s) 94, 142, 310, 326, 457
Sau96I GGNCC 4 cut(s) 27, 333, 499, 507
SchI GAGTC 2 cut(s) 188, 214
SduI GDGCHC 2 cut(s) 245, 449
SetI ASST 4 cut(s) 20, 32, 237, 319
SfaNI GCATC 1 cut(s) 418
Sfr274I CTCGAG 1 cut(s) 224
SinI GGWCC 2 cut(s) 27, 499
SlaI CTCGAG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 2 cut(s) 296, 557
SsiI CCGC 8 cut(s) 62, 65, 146, 152, 252, 395, 398, 497
SspMI CTAG 2 cut(s) 330, 392
StyI CCWWGG 2 cut(s) 196, 510
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 5 cut(s) 11, 162, 182, 225, 531
TaqII GACCGA 1 cut(s) 480
TasI AATT 2 cut(s) 296, 557
TatI WGTACW 1 cut(s) 276
TauI GCSGC 4 cut(s) 65, 68, 254, 398
TfiI GAWTC 3 cut(s) 100, 120, 382
TscAI CASTG 2 cut(s) 76, 428
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 4 cut(s) 17, 362, 561, 603
TspRI CASTG 2 cut(s) 76, 428
VpaK11BI GGWCC 2 cut(s) 27, 499
XhoI CTCGAG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 2 cut(s) 330, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.