Rroxscaffold_1G00074790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000497
Physical Location & Seq
Reverse (-)
95643711 .. 95647469
3759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074790.1

Sequence Viewer

Length: 495 bp
ATGTTCTGTACCATAAACATTCTCCTGAGGATTGCTGCAAAGCTTCCTTCTCCTGCACCCTGCATCAACCCAAGCAGAAGCTATAATTCTCTCAACGATCATCATTCTGGGAAATTCTACAGTACTGGGGGGTATCCCATACTCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTGGAGAAGGATAAAGAACATCAAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGAAGTACTGCAAGGAAAGAAACAATTCTGGTTCTGATGGAAAGCATACTGATGTATCAACGAAGGTGAGAGAAAGGGAGAAGAATAGCTTTGATGGAAAGCATTCTTGTAATTGCAAAACATATAGGTCTGGGTCCGGACACCAAGTGTGTGTATGTTTTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

18.61

Weight (kDa)

9.05

Isoelectric Point (pI)

48.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 464
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 113
AcuI CTGAAG 2 cut(s) 182, 282
AdeI CACNNNGTG 1 cut(s) 475
AfaI GTAC 3 cut(s) 10, 124, 335
AgsI TTSAA 2 cut(s) 190, 491
AluBI AGCT 4 cut(s) 43, 81, 311, 417
AluI AGCT 4 cut(s) 43, 81, 311, 417
AlwI GGATC 1 cut(s) 251
Aor13HI TCCGGA 1 cut(s) 464
AoxI GGCC 1 cut(s) 149
ApeKI GCWGC 1 cut(s) 35
ApoI RAATTY 1 cut(s) 113
Asp700I GAANNNNTTC 2 cut(s) 352, 430
AspS9I GGNCC 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 406
AsuII TTCGAA 1 cut(s) 285
AvaII GGWCC 1 cut(s) 462
AxyI CCTNAGG 1 cut(s) 26
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BbvI GCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 359, 416
BceAI ACGGC 1 cut(s) 136
BciVI GTATCC 1 cut(s) 144
BfaI CTAG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 118
BfuI GTATCC 1 cut(s) 144
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmcAI AGTACT 2 cut(s) 124, 335
Bme18I GGWCC 1 cut(s) 462
BmgT120I GGNCC 1 cut(s) 462
BmiI GGNNCC 1 cut(s) 463
BmrI ACTGGG 1 cut(s) 135
BmsI GCATC 1 cut(s) 72
BmuI ACTGGG 1 cut(s) 135
BpmI CTGGAG 1 cut(s) 239
Bpu14I TTCGAA 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 166
BsaWI WCCGGW 1 cut(s) 464
Bse1I ACTGG 2 cut(s) 130, 222
Bse21I CCTNAGG 1 cut(s) 26
BseAI TCCGGA 1 cut(s) 464
BseMII CTCAG 2 cut(s) 17, 174
BseNI ACTGG 2 cut(s) 130, 222
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 465
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 1 cut(s) 151
Bsp119I TTCGAA 1 cut(s) 285
Bsp13I TCCGGA 1 cut(s) 464
Bsp143I GATC 2 cut(s) 97, 243
BspANI GGCC 1 cut(s) 151
BspCNI CTCAG 2 cut(s) 18, 175
BspEI TCCGGA 1 cut(s) 464
BspLI GGNNCC 1 cut(s) 463
BspPI GGATC 1 cut(s) 251
BspT104I TTCGAA 1 cut(s) 285
BsrI ACTGG 2 cut(s) 130, 222
BssMI GATC 2 cut(s) 97, 243
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 26, 183
BstKTI GATC 2 cut(s) 100, 246
BstMBI GATC 2 cut(s) 97, 243
BstSFI CTRYAG 1 cut(s) 118
BstV1I GCAGC 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 26
BsuI GTATCC 1 cut(s) 144
BsuRI GGCC 1 cut(s) 151
BtsIMutI CAGTG 1 cut(s) 215
Cfr13I GGNCC 1 cut(s) 462
Csp6I GTAC 3 cut(s) 9, 123, 334
CviJI RGCY 5 cut(s) 43, 81, 151, 311, 417
CviKI_1 RGCY 5 cut(s) 43, 81, 151, 311, 417
CviQI GTAC 3 cut(s) 9, 123, 334
DdeI CTNAG 2 cut(s) 26, 183
DpnI GATC 2 cut(s) 99, 245
DpnII GATC 2 cut(s) 97, 243
DraIII CACNNNGTG 1 cut(s) 475
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 462
Eco57I CTGAAG 2 cut(s) 182, 282
Eco81I CCTNAGG 1 cut(s) 26
FaiI YATR 7 cut(s) 14, 84, 140, 375, 451, 453, 484
FalI AAGNNNNNCTT 2 cut(s) 401, 433
Fnu4HI GCNGC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 176
GluI GCNGC 1 cut(s) 36
GsuI CTGGAG 1 cut(s) 239
HaeIII GGCC 1 cut(s) 151
HapII CCGG 1 cut(s) 465
HindIII AAGCTT 1 cut(s) 41
HpaII CCGG 1 cut(s) 465
HphI GGTGA 1 cut(s) 406
Hpy188I TCNGA 2 cut(s) 201, 364
Hpy188III TCNNGA 3 cut(s) 25, 145, 465
HpyAV CCTTC 3 cut(s) 57, 217, 385
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 5 cut(s) 38, 56, 63, 339, 444
HpyF3I CTNAG 2 cut(s) 26, 183
Kpn2I TCCGGA 1 cut(s) 464
Kzo9I GATC 2 cut(s) 97, 243
LpnPI CCDG 9 cut(s) 38, 66, 73, 93, 111, 203, 342, 444, 478
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 176
MalI GATC 2 cut(s) 99, 245
MboI GATC 2 cut(s) 97, 243
MboII GAAGA 5 cut(s) 214, 242, 275, 299, 421
MluCI AATT 5 cut(s) 85, 113, 275, 352, 439
MnlI CCTC 4 cut(s) 21, 141, 259, 262
MroI TCCGGA 1 cut(s) 464
MroXI GAANNNNTTC 2 cut(s) 352, 430
MslI CAYNNNNRTG 1 cut(s) 378
MspI CCGG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 430
NdeII GATC 2 cut(s) 97, 243
NlaIV GGNNCC 1 cut(s) 463
NspV TTCGAA 1 cut(s) 285
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 2 cut(s) 352, 430
PkrI GCNGC 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 463
PspPI GGNCC 1 cut(s) 462
RsaI GTAC 3 cut(s) 10, 124, 335
RsaNI GTAC 3 cut(s) 9, 123, 334
RseI CAYNNNNRTG 1 cut(s) 378
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 97, 243
Sau96I GGNCC 1 cut(s) 462
ScaI AGTACT 2 cut(s) 124, 335
SetI ASST 7 cut(s) 45, 83, 273, 313, 396, 419, 458
SfaNI GCATC 1 cut(s) 72
SfcI CTRYAG 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 285
SinI GGWCC 1 cut(s) 462
SmiMI CAYNNNNRTG 1 cut(s) 378
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 5 cut(s) 85, 113, 275, 352, 439
SspMI CTAG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 285
TasI AATT 5 cut(s) 85, 113, 275, 352, 439
TatI WGTACW 2 cut(s) 122, 333
TscAI CASTG 1 cut(s) 222
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 2 cut(s) 225, 321
TspRI CASTG 1 cut(s) 222
VpaK11BI GGWCC 1 cut(s) 462
XapI RAATTY 1 cut(s) 113
XmnI GAANNNNTTC 2 cut(s) 352, 430
XspI CTAG 1 cut(s) 176
ZrmI AGTACT 2 cut(s) 124, 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.