RchiOBHm_Chr5g0049351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000497
Physical Location & Seq
Reverse (-)
46888739 .. 46891258
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32702

Sequence Viewer

Length: 414 bp
ATGGATCCTCTTCCTCAAGAAGTCGACGATTACATCAGAGAGTCGATTGACCACACCCTCGGCCTCCCCGTGTCCGCACAGACTCTCGAATTGAAGAAGCTCCGGTGCTCGGAAGTCGCGAAGCGACGGCTGCGAGACCAGTACACGGCCGAGGCTTGTATGAACGCCCAGGCTTTGAGGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGCGCGCATCTGGTGAGTCAGTGTAACAAGTTGGAGAAGGAGTGCTCGCTCTATGATCATGACCGAGAGGCTTTGATGGATTTCGGAAACGAGGCAGACCAGAGGGCCAAGGAGGCTGAGTTGGAGGATGAACTGGGAGAATTGAGGGAAGAATTGAAGTTTTACAAGAATGAATACGAGAGGCTTTCGGTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.98

Weight (kDa)

4.75

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AccII CGCG 2 cut(s) 119, 221
AciI CCGC 2 cut(s) 75, 209
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 147
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 109, 145
AgsI TTSAA 2 cut(s) 94, 373
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw21I GWGCWC 2 cut(s) 110, 263
Alw26I GTCTC 2 cut(s) 129, 196
AlwI GGATC 1 cut(s) 12
AoxI GGCC 3 cut(s) 61, 147, 321
ApeKI GCWGC 1 cut(s) 130
AspLEI GCGC 2 cut(s) 221, 223
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 241
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 110, 263
BbvI GCAGC 1 cut(s) 117
BccI CCATC 1 cut(s) 286
BceAI ACGGC 2 cut(s) 143, 162
BciT130I CCWGG 1 cut(s) 170
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 2 cut(s) 129, 196
BfaI CTAG 1 cut(s) 206
BglI GCCNNNNNGGC 1 cut(s) 329
BisI GCNGC 2 cut(s) 131, 210
BlsI GCNGC 2 cut(s) 132, 211
Bme1390I CCNGG 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 359
BmsI GCATC 1 cut(s) 232
BmuI ACTGGG 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 129
BsaJI CCNNGG 4 cut(s) 58, 150, 168, 324
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 4 cut(s) 242, 272, 320, 350
Bsc4I CCNNNNNNNGG 2 cut(s) 109, 145
Bse1I ACTGG 2 cut(s) 139, 354
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 4 cut(s) 58, 150, 168, 324
BseGI GGATG 1 cut(s) 349
BseLI CCNNNNNNNGG 2 cut(s) 109, 145
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 2 cut(s) 139, 354
BsePI GCGCGC 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 206
BseX3I CGGCCG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 117
Bsh1236I CGCG 2 cut(s) 119, 221
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 3 cut(s) 63, 149, 323
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 110, 263
BsiSI CCGG 1 cut(s) 103
BslI CCNNNNNNNGG 2 cut(s) 109, 145
BsmAI GTCTC 2 cut(s) 129, 196
BsnI GGCC 3 cut(s) 63, 149, 323
Bso31I GGTCTC 1 cut(s) 129
Bsp1286I GDGCHC 2 cut(s) 110, 263
Bsp143I GATC 2 cut(s) 4, 271
Bsp68I TCGCGA 1 cut(s) 119
BspACI CCGC 2 cut(s) 75, 209
BspANI GGCC 3 cut(s) 63, 149, 323
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 2 cut(s) 119, 221
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 129
BsrI ACTGG 2 cut(s) 139, 354
BssECI CCNNGG 4 cut(s) 58, 150, 168, 324
BssHII GCGCGC 1 cut(s) 219
BssMI GATC 2 cut(s) 4, 271
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 221, 263
BstDEI CTNAG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 349
BstFNI CGCG 2 cut(s) 119, 221
BstHHI GCGC 2 cut(s) 221, 223
BstKTI GATC 2 cut(s) 7, 274
BstMAI GTCTC 2 cut(s) 129, 196
BstMBI GATC 2 cut(s) 4, 271
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 130, 218, 329
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstUI CGCG 2 cut(s) 119, 221
BstV1I GCAGC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZI CGGCCG 1 cut(s) 147
BsuRI GGCC 3 cut(s) 63, 149, 323
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 242
BtuMI TCGCGA 1 cut(s) 119
Cac8I GCNNGC 2 cut(s) 221, 263
CciI TCATGA 1 cut(s) 274
CfoI GCGC 2 cut(s) 221, 223
Cfr13I GGNCC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 142
CviAII CATG 1 cut(s) 275
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 333
DpnI GATC 2 cut(s) 6, 273
DpnII GATC 2 cut(s) 4, 271
EaeI YGGCCR 1 cut(s) 147
EagI CGGCCG 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
EclXI CGGCCG 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 129
Eco52I CGGCCG 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 1 cut(s) 278
FaiI YATR 3 cut(s) 161, 270, 276
FatI CATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 131, 210
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 2 cut(s) 131, 210
FspBI CTAG 1 cut(s) 206
GlaI GCGC 2 cut(s) 220, 222
GluI GCNGC 2 cut(s) 131, 210
HaeIII GGCC 3 cut(s) 63, 149, 323
HapII CCGG 1 cut(s) 103
HhaI GCGC 2 cut(s) 221, 223
Hin1II CATG 1 cut(s) 278
Hin6I GCGC 2 cut(s) 219, 221
HinP1I GCGC 2 cut(s) 219, 221
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 4 cut(s) 41, 82, 196, 232
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 25, 144
Hpy188I TCNGA 4 cut(s) 38, 112, 201, 302
Hpy188III TCNNGA 4 cut(s) 17, 86, 118, 275
Hpy8I GTNNAC 2 cut(s) 25, 144
Hpy99I CGWCG 2 cut(s) 29, 129
HpyAV CCTTC 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 218, 329
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 1 cut(s) 278
HspAI GCGC 2 cut(s) 219, 221
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 2 cut(s) 4, 271
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 7 cut(s) 116, 152, 155, 182, 212, 329, 335
Lsp1109I GCAGC 1 cut(s) 117
LweI GCATC 1 cut(s) 232
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 1 cut(s) 239
MalI GATC 2 cut(s) 6, 273
MboI GATC 2 cut(s) 4, 271
MboII GAAGA 2 cut(s) 106, 377
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 110, 263
MluCI AATT 3 cut(s) 89, 356, 368
MlyI GAGTC 3 cut(s) 50, 76, 241
MmeI TCCRAC 2 cut(s) 228, 318
MseI TTAA 1 cut(s) 412
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 2 cut(s) 119, 221
MwoI GCNNNNNNNGC 3 cut(s) 130, 218, 329
NdeII GATC 2 cut(s) 4, 271
NlaIII CATG 1 cut(s) 278
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 2 cut(s) 39, 175
NruI TCGCGA 1 cut(s) 119
PagI TCATGA 1 cut(s) 274
PauI GCGCGC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 116
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 2 cut(s) 132, 211
PleI GAGTC 3 cut(s) 49, 76, 240
PpsI GAGTC 3 cut(s) 49, 76, 240
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 321
PsuI RGATCY 1 cut(s) 4
PteI GCGCGC 1 cut(s) 219
RruI TCGCGA 1 cut(s) 119
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SalI GTCGAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 412
SatI GCNGC 2 cut(s) 131, 210
Sau3AI GATC 2 cut(s) 4, 271
Sau96I GGNCC 1 cut(s) 321
SchI GAGTC 3 cut(s) 50, 76, 241
ScrFI CCNGG 1 cut(s) 170
SduI GDGCHC 2 cut(s) 110, 263
SetI ASST 1 cut(s) 102
SfaNI GCATC 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 3 cut(s) 89, 356, 368
SsiI CCGC 2 cut(s) 75, 209
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 324
TaqI TCGA 3 cut(s) 24, 44, 87
TaqII GACCGA 1 cut(s) 294
TasI AATT 3 cut(s) 89, 356, 368
TatI WGTACW 1 cut(s) 141
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 1 cut(s) 412
Tru9I TTAA 1 cut(s) 412
TscAI CASTG 1 cut(s) 242
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 3 cut(s) 176, 360, 402
TspRI CASTG 1 cut(s) 242
XmiI GTMKAC 1 cut(s) 24
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.