Prupe.1G524200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000497
Physical Location & Seq
Reverse (-)
42968509 .. 42971162
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G524200.1

Sequence Viewer

Length: 993 bp
ATGGATCTTCCGCAAAAAATCGACGATTATATCAAAGAATCGATCGATCACTCCTTGGGCCTCCCTGTGTCCACGCACACGCTCGAATTGAAGCTTCGATGCTCGGAAGAATCGAAGCAGCGGCTTCAGAACCAGTACTCTGTTCTACTCGCAAAAATGAAGGAGAAAGATCAAGTCCTCGAGCGCGCTAGGGCTGAAGCGAGCATGAATGCACAAGCTTTGAGGAAGTTCGTTGAGGAGAATCAGAGATTGGCGTCAGAGTGCGCGCATCTAGTGACTCAGTGCAACAAATGGGAGAGAGAGTGCTCACTCTACGATCACGACCGGGAGGCTTTGATGGATTTTGGGAACGAGGCTGACCAGCGTGCCAAGGAGGCGGAGATTCGTGTTCAAGAGTTGGAGGACGAAGTCAAAGAGTTAAGGGATGAATTGGGATTCTACAAGCACAAATTAGAGATGCATTCGGTTGATTCATCTTCTGATGACACAACCATTGGAGAGAAACTACTGGAGTCTGTTTTAGCAACATTCATCAGTAAAGATGAAGCTGTGTCTGCACCTGCATTTCTGGAGGCCAATAGTGGAAATGAGTCATGTCAAATGTTGCTAAAAATGTGGAACCGCTTGAGGCCATCGACTCAAAAAGTTCTGTCACTGGTGGCCAAGGTAAAGACACTTGAGAAGGATAAGGAACATCTAACGATGAATCTTTGTACCGCTGAAGAAGAGGTCAAATTGCTTTTTGAAGAGAACAAAGTGCTAGATGTGGAGAACAAAAGATTACTGAGGCAGTACCACAAGGAAAGAAACCAGTCTGGTTCAGGCGGTAAACATAACGACAGTGCATCAGCAAAGTCGAATAAGCGAAAATCAAGCTCAAAGATGAGCAGCCCGATTCAAGCGAAGATTGATTTCAGTGACCAAGAACCAGCAAGACAGCCCCTTTCACCCTTGCGTTGTAACTCCCCTAACTCTAGAAACCATAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

37.79

Weight (kDa)

6.25

Isoelectric Point (pI)

56.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 568
Acc36I ACCTGC 1 cut(s) 568
AccII CGCG 2 cut(s) 186, 266
AciI CCGC 6 cut(s) 11, 121, 377, 622, 717, 825
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 660
AcuI CTGAAG 3 cut(s) 110, 216, 741
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 3 cut(s) 137, 715, 794
AgsI TTSAA 4 cut(s) 91, 392, 746, 899
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 4 cut(s) 94, 218, 548, 876
AluI AGCT 4 cut(s) 94, 218, 548, 876
Alw21I GWGCWC 1 cut(s) 308
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 179
AoxI GGCC 4 cut(s) 58, 573, 629, 660
ApeKI GCWGC 2 cut(s) 118, 888
AspLEI GCGC 4 cut(s) 186, 188, 266, 268
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 1 cut(s) 939
AvaI CYCGRG 1 cut(s) 179
BalI TGGCCA 1 cut(s) 662
Bbv12I GWGCWC 1 cut(s) 308
BbvI GCAGC 2 cut(s) 130, 900
BccI CCATC 2 cut(s) 331, 640
BcnI CCSGG 1 cut(s) 326
BfaI CTAG 4 cut(s) 189, 272, 761, 975
BfuAI ACCTGC 1 cut(s) 568
BglI GCCNNNNNGGC 1 cut(s) 374
BisI GCNGC 3 cut(s) 119, 122, 889
BlsI GCNGC 3 cut(s) 120, 123, 890
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 58
BmiI GGNNCC 1 cut(s) 620
BmrFI CCNGG 1 cut(s) 326
BmsI GCATC 4 cut(s) 89, 277, 447, 854
BpmI CTGGAG 2 cut(s) 530, 590
BpuEI CTTGAG 2 cut(s) 646, 698
BpuMI CCSGG 1 cut(s) 326
Bsa29I ATCGAT 2 cut(s) 41, 45
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 3 cut(s) 54, 369, 663
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bse1I ACTGG 4 cut(s) 133, 513, 660, 811
BseCI ATCGAT 2 cut(s) 41, 45
BseDI CCNNGG 3 cut(s) 54, 369, 663
BseGI GGATG 1 cut(s) 430
BseMII CTCAG 2 cut(s) 293, 776
BseNI ACTGG 4 cut(s) 133, 513, 660, 811
BsePI GCGCGC 2 cut(s) 184, 264
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 2 cut(s) 130, 900
BsgI GTGCAG 1 cut(s) 540
Bsh1236I CGCG 2 cut(s) 186, 266
Bsh1285I CGRYCG 2 cut(s) 45, 325
BshFI GGCC 4 cut(s) 60, 575, 631, 662
BshVI ATCGAT 2 cut(s) 41, 45
BsiEI CGRYCG 2 cut(s) 45, 325
BsiHKAI GWGCWC 1 cut(s) 308
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 325
BsmI GAATGC 2 cut(s) 214, 460
BsnI GGCC 4 cut(s) 60, 575, 631, 662
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 5 cut(s) 4, 42, 46, 169, 316
BspACI CCGC 6 cut(s) 11, 121, 377, 622, 717, 825
BspANI GGCC 4 cut(s) 60, 575, 631, 662
BspCNI CTCAG 2 cut(s) 292, 777
BspDI ATCGAT 2 cut(s) 41, 45
BspFNI CGCG 2 cut(s) 186, 266
BspLI GGNNCC 1 cut(s) 620
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 4 cut(s) 133, 513, 660, 811
BssECI CCNNGG 3 cut(s) 54, 369, 663
BssHII GCGCGC 2 cut(s) 184, 264
BssMI GATC 5 cut(s) 4, 42, 46, 169, 316
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 3 cut(s) 54, 369, 663
Bst4CI ACNGT 1 cut(s) 842
Bst6I CTCTTC 2 cut(s) 720, 741
BstACI GRCGYC 1 cut(s) 254
BstC8I GCNNGC 4 cut(s) 186, 202, 266, 366
BstDEI CTNAG 2 cut(s) 279, 785
BstF5I GGATG 1 cut(s) 430
BstFNI CGCG 2 cut(s) 186, 266
BstHHI GCGC 4 cut(s) 186, 188, 266, 268
BstKTI GATC 5 cut(s) 7, 45, 49, 172, 319
BstMBI GATC 5 cut(s) 4, 42, 46, 169, 316
BstMCI CGRYCG 2 cut(s) 45, 325
BstMWI GCNNNNNNNGC 2 cut(s) 374, 554
BstSCI CCNGG 1 cut(s) 324
BstUI CGCG 2 cut(s) 186, 266
BstV1I GCAGC 2 cut(s) 130, 900
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 2 cut(s) 41, 45
BsuRI GGCC 4 cut(s) 60, 575, 631, 662
BsuTUI ATCGAT 2 cut(s) 41, 45
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 4 cut(s) 287, 653, 847, 922
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 4 cut(s) 186, 202, 266, 366
CfoI GCGC 4 cut(s) 186, 188, 266, 268
Cfr13I GGNCC 1 cut(s) 58
ClaI ATCGAT 2 cut(s) 41, 45
CseI GACGC 1 cut(s) 243
Csp6I GTAC 3 cut(s) 136, 714, 793
CviAII CATG 2 cut(s) 205, 594
CviQI GTAC 3 cut(s) 136, 714, 793
DdeI CTNAG 2 cut(s) 279, 785
DpnI GATC 5 cut(s) 6, 44, 48, 171, 318
DpnII GATC 5 cut(s) 4, 42, 46, 169, 316
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 2 cut(s) 720, 741
EarI CTCTTC 2 cut(s) 720, 741
EciI GGCGGA 1 cut(s) 392
Eco130I CCWWGG 3 cut(s) 54, 369, 663
Eco57I CTGAAG 3 cut(s) 110, 216, 741
Eco88I CYCGRG 1 cut(s) 179
EcoT14I CCWWGG 3 cut(s) 54, 369, 663
EcoT22I ATGCAT 1 cut(s) 462
ErhI CCWWGG 3 cut(s) 54, 369, 663
FaeI CATG 2 cut(s) 208, 597
FaiI YATR 5 cut(s) 30, 206, 595, 834, 984
FatI CATG 2 cut(s) 204, 593
Fnu4HI GCNGC 3 cut(s) 119, 122, 889
FokI GGATG 1 cut(s) 437
Fsp4HI GCNGC 3 cut(s) 119, 122, 889
FspBI CTAG 4 cut(s) 189, 272, 761, 975
GlaI GCGC 4 cut(s) 185, 187, 265, 267
GluI GCNGC 3 cut(s) 119, 122, 889
GsuI CTGGAG 2 cut(s) 530, 590
HaeIII GGCC 4 cut(s) 60, 575, 631, 662
HapII CCGG 1 cut(s) 325
HgaI GACGC 1 cut(s) 243
HhaI GCGC 4 cut(s) 186, 188, 266, 268
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 2 cut(s) 208, 597
Hin6I GCGC 4 cut(s) 184, 186, 264, 266
HinP1I GCGC 4 cut(s) 184, 186, 264, 266
HindIII AAGCTT 2 cut(s) 92, 216
HpaII CCGG 1 cut(s) 325
HphI GGTGA 1 cut(s) 939
Hpy166II GTNNAC 2 cut(s) 72, 830
Hpy188I TCNGA 5 cut(s) 106, 129, 246, 259, 481
Hpy188III TCNNGA 4 cut(s) 320, 392, 569, 975
Hpy8I GTNNAC 2 cut(s) 72, 830
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 2 cut(s) 154, 676
HpyCH4III ACNGT 1 cut(s) 842
HpyCH4V TGCA 6 cut(s) 212, 285, 460, 557, 563, 845
HpyF10VI GCNNNNNNNGC 2 cut(s) 374, 554
HpyF3I CTNAG 2 cut(s) 279, 785
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 2 cut(s) 208, 597
HspAI GCGC 4 cut(s) 184, 186, 264, 266
Kzo9I GATC 5 cut(s) 4, 42, 46, 169, 316
Lsp1109I GCAGC 2 cut(s) 130, 900
LweI GCATC 4 cut(s) 89, 277, 447, 854
MaeI CTAG 4 cut(s) 189, 272, 761, 975
MaeIII GTNAC 4 cut(s) 274, 651, 917, 959
MalI GATC 5 cut(s) 6, 44, 48, 171, 318
MboI GATC 5 cut(s) 4, 42, 46, 169, 316
MboII GAAGA 6 cut(s) 119, 468, 734, 737, 758, 916
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 308
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 4 cut(s) 86, 428, 449, 734
MluNI TGGCCA 1 cut(s) 662
MlyI GAGTC 4 cut(s) 271, 521, 599, 631
MmeI TCCRAC 1 cut(s) 378
Mox20I TGGCCA 1 cut(s) 662
Mph1103I ATGCAT 1 cut(s) 462
MscI TGGCCA 1 cut(s) 662
MseI TTAA 1 cut(s) 419
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 2 cut(s) 121, 719
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 326
Mva1269I GAATGC 2 cut(s) 214, 460
MvnI CGCG 2 cut(s) 186, 266
MwoI GCNNNNNNNGC 2 cut(s) 374, 554
NciI CCSGG 1 cut(s) 326
NdeII GATC 5 cut(s) 4, 42, 46, 169, 316
NlaIII CATG 2 cut(s) 208, 597
NlaIV GGNNCC 1 cut(s) 620
NmuCI GTSAC 3 cut(s) 274, 651, 917
NsiI ATGCAT 1 cut(s) 462
PaeR7I CTCGAG 1 cut(s) 179
PaqCI CACCTGC 1 cut(s) 568
PauI GCGCGC 2 cut(s) 184, 264
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PctI GAATGC 2 cut(s) 214, 460
PfeI GAWTC 8 cut(s) 38, 110, 241, 382, 435, 470, 706, 895
PflFI GACNNNGTC 1 cut(s) 407
PkrI GCNGC 3 cut(s) 120, 123, 890
Ple19I CGATCG 1 cut(s) 45
PleI GAGTC 4 cut(s) 271, 520, 598, 631
PpsI GAGTC 4 cut(s) 271, 520, 598, 631
PspN4I GGNNCC 1 cut(s) 620
PspPI GGNCC 1 cut(s) 58
PspXI VCTCGAGB 1 cut(s) 179
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 407
PteI GCGCGC 2 cut(s) 184, 264
PvuI CGATCG 1 cut(s) 45
RsaI GTAC 3 cut(s) 137, 715, 794
RsaNI GTAC 3 cut(s) 136, 714, 793
SaqAI TTAA 1 cut(s) 419
SatI GCNGC 3 cut(s) 119, 122, 889
Sau3AI GATC 5 cut(s) 4, 42, 46, 169, 316
Sau96I GGNCC 1 cut(s) 58
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 4 cut(s) 271, 521, 599, 631
ScrFI CCNGG 1 cut(s) 326
SduI GDGCHC 1 cut(s) 308
SetI ASST 7 cut(s) 96, 220, 550, 562, 669, 732, 878
SfaNI GCATC 4 cut(s) 89, 277, 447, 854
Sfr274I CTCGAG 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 179
SmlI CTYRAG 3 cut(s) 179, 625, 677
SmoI CTYRAG 3 cut(s) 179, 625, 677
Sse9I AATT 4 cut(s) 86, 428, 449, 734
SsiI CCGC 6 cut(s) 11, 121, 377, 622, 717, 825
SspMI CTAG 4 cut(s) 189, 272, 761, 975
StyD4I CCNGG 1 cut(s) 324
StyI CCWWGG 3 cut(s) 54, 369, 663
TaaI ACNGT 1 cut(s) 842
TaqI TCGA 9 cut(s) 21, 41, 45, 84, 97, 113, 180, 635, 857
TasI AATT 4 cut(s) 86, 428, 449, 734
TatI WGTACW 1 cut(s) 135
TauI GCSGC 1 cut(s) 124
TfiI GAWTC 8 cut(s) 38, 110, 241, 382, 435, 470, 706, 895
Tru1I TTAA 1 cut(s) 419
Tru9I TTAA 1 cut(s) 419
TscAI CASTG 4 cut(s) 287, 660, 847, 922
TseFI GTSAC 3 cut(s) 274, 651, 917
TseI GCWGC 2 cut(s) 118, 888
Tsp45I GTSAC 3 cut(s) 274, 651, 917
TspDTI ATGAA 7 cut(s) 173, 221, 441, 462, 520, 558, 719
TspRI CASTG 4 cut(s) 287, 660, 847, 922
Tth111I GACNNNGTC 1 cut(s) 407
XbaI TCTAGA 1 cut(s) 974
XhoI CTCGAG 1 cut(s) 179
XspI CTAG 4 cut(s) 189, 272, 761, 975
ZrmI AGTACT 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.