Rmu_sc0004800.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004800.1
OG0000497
Physical Location & Seq
Reverse (-)
35480 .. 36002
523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004800.1_g000003.1.cds

Sequence Viewer

Length: 294 bp
atgcttaaaatttcttttcgtttacatggcagcttgaggccgtcatctcaaaaagttttatcgctagttgctgagttgaaaacacttcagaagaataatgaaacactggagaaggataaagaacatcaaaggatcaatcttctttctgctgaagagaaggtcaaattgcttttcgaagaaaacaaagtgttagatgaagctaacaaaagattactaaagcagtaccgcaaggaaagaaacaattctggttctgatggaaagcatactgatgtatcaacgaagtcaaacaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.23

Weight (kDa)

9.77

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 226
AclWI GGATC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 2 cut(s) 71, 171
AfaI GTAC 1 cut(s) 224
AgsI TTSAA 1 cut(s) 79
AluBI AGCT 2 cut(s) 33, 200
AluI AGCT 2 cut(s) 33, 200
AlwI GGATC 1 cut(s) 140
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 9
Asp700I GAANNNNTTC 1 cut(s) 241
AsuII TTCGAA 1 cut(s) 174
BaeI ACNNNNGTAYC 2 cut(s) 255, 288
BbvI GCAGC 1 cut(s) 42
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 25
BfaI CTAG 1 cut(s) 65
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
BpmI CTGGAG 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 111
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 1 cut(s) 40
BsnI GGCC 1 cut(s) 40
Bsp119I TTCGAA 1 cut(s) 174
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 1 cut(s) 226
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 64
BspPI GGATC 1 cut(s) 140
BspT104I TTCGAA 1 cut(s) 174
BsrI ACTGG 1 cut(s) 111
BssMI GATC 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 147
BstBI TTCGAA 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 72
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 104
Csp6I GTAC 1 cut(s) 223
CviAII CATG 1 cut(s) 26
CviJI RGCY 3 cut(s) 33, 40, 200
CviKI_1 RGCY 3 cut(s) 33, 40, 200
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 1 cut(s) 72
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco57I CTGAAG 2 cut(s) 71, 171
FaeI CATG 1 cut(s) 29
FaiI YATR 2 cut(s) 27, 264
FatI CATG 1 cut(s) 25
Fnu4HI GCNGC 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 31
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 40
Hin1II CATG 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 90, 253
Hpy8I GTNNAC 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 106, 151
HpyF3I CTNAG 1 cut(s) 72
Hsp92II CATG 1 cut(s) 29
Kzo9I GATC 1 cut(s) 132
LpnPI CCDG 2 cut(s) 92, 231
Lsp1109I GCAGC 1 cut(s) 42
MaeI CTAG 1 cut(s) 65
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 4 cut(s) 103, 131, 164, 188
MluCI AATT 3 cut(s) 9, 164, 241
MnlI CCTC 1 cut(s) 30
MroXI GAANNNNTTC 1 cut(s) 241
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 267
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 29
NspV TTCGAA 1 cut(s) 174
PdmI GAANNNNTTC 1 cut(s) 241
PkrI GCNGC 1 cut(s) 32
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 1 cut(s) 132
SetI ASST 3 cut(s) 35, 162, 202
SfuI TTCGAA 1 cut(s) 174
SgeI CNNG 6 cut(s) 38, 46, 77, 119, 241, 258
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
Sse9I AATT 3 cut(s) 9, 164, 241
SsiI CCGC 1 cut(s) 226
SspMI CTAG 1 cut(s) 65
TaqI TCGA 1 cut(s) 174
TasI AATT 3 cut(s) 9, 164, 241
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 111
TseI GCWGC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 114, 210
TspRI CASTG 1 cut(s) 111
XapI RAATTY 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 241
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.