Rh3DG293700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000497
Physical Location & Seq
Forward (+)
30482744 .. 30486766
4023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG293700.1

Sequence Viewer

Length: 336 bp
ATGGATATTACATGGATATTACATGATATAAAATGTGCTCATCAAGGAGCTATTAGGCAACCAGAAGTAAATTTTGGTTCAATCTTGAGGCCGTCATCTCAAAAAGCTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTGGAGAAGGATAAAGAACATCAAAGGATCAATCTTCTTTCTGCTGAAGAGGAGGTCAAATTGCTTTTCGAAGAAAACAAAGTGTTAGATGAAGCTAACAAAAGATTACTAAAGCAGTACCGCAAGGAAAGAAACAATTCTGGTTCTGATGGAAAGCATACTGATGTATCAACGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.78

Weight (kDa)

7.87

Isoelectric Point (pI)

35.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 277
AclWI GGATC 1 cut(s) 191
AcsI RAATTY 1 cut(s) 70
AcuI CTGAAG 2 cut(s) 122, 222
AfaI GTAC 1 cut(s) 275
AgsI TTSAA 2 cut(s) 81, 130
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 3 cut(s) 50, 107, 251
AluI AGCT 3 cut(s) 50, 107, 251
Alw21I GWGCWC 1 cut(s) 40
AlwI GGATC 1 cut(s) 191
AoxI GGCC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 70
Asp700I GAANNNNTTC 1 cut(s) 292
AsuII TTCGAA 1 cut(s) 225
BaeI ACNNNNGTAYC 1 cut(s) 306
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 76
BfaI CTAG 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 221
BshFI GGCC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 40
BsnI GGCC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 183
BspACI CCGC 1 cut(s) 277
BspANI GGCC 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 115
BspPI GGATC 1 cut(s) 191
BspT104I TTCGAA 1 cut(s) 225
BsrI ACTGG 1 cut(s) 162
BssMI GATC 1 cut(s) 183
Bst6I CTCTTC 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 123
BstKTI GATC 1 cut(s) 186
BstMBI GATC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 155
Csp6I GTAC 1 cut(s) 274
CviAII CATG 2 cut(s) 12, 23
CviJI RGCY 4 cut(s) 50, 91, 107, 251
CviKI_1 RGCY 4 cut(s) 50, 91, 107, 251
CviQI GTAC 1 cut(s) 274
DdeI CTNAG 1 cut(s) 123
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco57I CTGAAG 2 cut(s) 122, 222
FaeI CATG 2 cut(s) 15, 26
FaiI YATR 4 cut(s) 13, 24, 29, 315
FatI CATG 2 cut(s) 11, 22
FspBI CTAG 1 cut(s) 116
GsuI CTGGAG 1 cut(s) 179
HaeIII GGCC 1 cut(s) 91
Hin1II CATG 2 cut(s) 15, 26
HindIII AAGCTT 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 141, 304
Hpy188III TCNNGA 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 2 cut(s) 15, 26
Kzo9I GATC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 3 cut(s) 75, 143, 282
MaeI CTAG 1 cut(s) 116
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 4 cut(s) 154, 182, 215, 239
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 3 cut(s) 70, 215, 292
MnlI CCTC 3 cut(s) 81, 199, 202
MroXI GAANNNNTTC 1 cut(s) 292
MslI CAYNNNNRTG 1 cut(s) 318
NdeII GATC 1 cut(s) 183
NlaIII CATG 2 cut(s) 15, 26
NspV TTCGAA 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 292
RsaI GTAC 1 cut(s) 275
RsaNI GTAC 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 318
Sau3AI GATC 1 cut(s) 183
SduI GDGCHC 1 cut(s) 40
SetI ASST 4 cut(s) 52, 109, 213, 253
SfuI TTCGAA 1 cut(s) 225
SgeI CNNG 9 cut(s) 24, 35, 56, 74, 97, 128, 170, 292, 309
SmiMI CAYNNNNRTG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 85
SmoI CTYRAG 1 cut(s) 85
Sse9I AATT 3 cut(s) 70, 215, 292
SsiI CCGC 1 cut(s) 277
SspMI CTAG 1 cut(s) 116
TaqI TCGA 1 cut(s) 225
TasI AATT 3 cut(s) 70, 215, 292
TscAI CASTG 1 cut(s) 162
TspDTI ATGAA 2 cut(s) 165, 261
TspRI CASTG 1 cut(s) 162
XapI RAATTY 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 292
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.