Rw5G030640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000497
Physical Location & Seq
Reverse (-)
48707715 .. 48711346
3632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G030640.1

Sequence Viewer

Length: 795 bp
ATGGATCCTCTTCCGCAACAAGTCGACGATTACATCAGAGAGTCGATTGACCTCACCCTCGGCCTCCCCGTGTCCGCACAGACTCTCGAATTGAAGAAGCTCCGGTGCTCGGAAGCCGCGAAGCGACGGATTGAAGGACAAGGATCAAGCTCTGGACCGCATTCGAAGTTTGTGGAGGAGAATCAGAGACTAGCGGCAGAGTGTGCGCATCTGCTGAGTCAGTGTAACAAGTTGGAGAAGGAGTGCTCGCTCTATGATCATGACCGAGAGGCTTTGATGGATTTCGGAACCAGAGGGCCAAGGAGTTTTACAAGGAATGAATACCAGAGGCTTTCGCTTGATTCATCTGCTGAAGGCTCACCTGTTGAAGAGAAACTAGTGGAGTCTATTTTAGCAACATTGACCAAAGATGAGACAGGGGCGGCATGTTCATGTCAAAGGTTGCTAAATATGTGGAATGGCTTGAGGCCGTCATCTCAAAAAGTTTTATCGCTAGTTGCTGAGTTGAAAACACTTCAGAAGAATAATGAAACACTTGAGAAGGATGAAGAACATCTAAGGATCAATCTTCTTTCTGCTGAAGAGGAGTACCGCAAGGAAAGAAACAATTCTGGTTCTGATGGAAAGCATACTGATGTATCAACGAAGTCAAACAAGCGAAAATCTAGCTCTAAGGTGATGAGCAGCAGCCCGATTCAGGGGAAGATCGATTTCAGTGACCAAGAATCAGCAAGACAACCTCTCTCACCCTTGCATTGTAACTCCCCTAACTCAAGACTGCATAAAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

29.61

Weight (kDa)

6.67

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G14680 AT4G09060 AT4G09060
fragaria_vesca FvH4_5g36300 FvH4_5g36300
malus_domestica MD08G1189700.v1.1 MD08G1190000.v1.1 MD08G1190200.v1.1 MD15G1377500.v1.1
prunus_persica Prupe.1G524200_v2.0.a1
pyrus_communis pycom08g16320 pycom15g33820
rosa_chinensis RchiOBHm_Chr3g0481851 RchiOBHm_Chr3g0481861 RchiOBHm_Chr5g0040961 RchiOBHm_Chr5g0044491 RchiOBHm_Chr5g0044811 RchiOBHm_Chr5g0045611 RchiOBHm_Chr5g0045621 RchiOBHm_Chr5g0049341 RchiOBHm_Chr5g0049351 RchiOBHm_Chr7g0238301 RchiOBHm_Chr7g0238321
rosa_laevigata RLG00000000918 RLG00000000921 RLG00000034299 RLG00000034300
rosa_multiflora Rmu_sc0001047.1_g000051 Rmu_sc0001371.1_g000020 Rmu_sc0001847.1_g000002 Rmu_sc0002988.1_g000004 Rmu_sc0003789.1_g000001 Rmu_sc0004567.1_g000016 Rmu_sc0004800.1_g000003 Rmu_sc0005102.1_g000001 Rmu_sc0006651.1_g000010 Rmu_sc0006651.1_g000011 Rmu_ssc0000398.1_g000017
rosa_roxburghii Rroxscaffold_153G00436700 Rroxscaffold_153G00436710 Rroxscaffold_1G00034810 Rroxscaffold_1G00036220 Rroxscaffold_1G00036230 Rroxscaffold_1G00074790 Rroxscaffold_2G00104790 Rroxscaffold_2G00104800 Rroxscaffold_3G00223120 Rroxscaffold_5G00337240 Rroxscaffold_6G00399830 Rroxscaffold_6G00400170
rosa_rugosa Rorug02G0148000 Rorug04G0003000 Rorug05G0218300 Rorug05G0218400 Rorug05G0219900 Rorug07G0311100 Rorug07G0311900
rosa_samantha Rh2BG555200 Rh3DG293700 Rh4BG116500 Rh5BG279700 Rh5BG308000 Rh5BG308100 Rh5BG313100 Rh5BG313200 Rh5BG335300 Rh5BG335400 Rh5CG335000 Rh5CG335100 Rh5DG287700 Rh5DG318100 Rh5DG318200 Rh5DG323600 Rh5DG323700 Rh5DG347600 Rh5DG347700 Rh6DG317800 Rh7BG437500 Rh7CG484600 Rh7DG453000
rosa_wichuraiana Rw0G004340 Rw5G025810 Rw5G027210 Rw5G027900 Rw5G028300 Rw5G030640 Rw7G038670 Rw7G038780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 207
AccI GTMKAC 1 cut(s) 24
AccII CGCG 1 cut(s) 119
AciI CCGC 7 cut(s) 14, 75, 117, 158, 194, 422, 592
AclWI GGATC 3 cut(s) 12, 151, 569
AcuI CTGAAG 3 cut(s) 372, 500, 600
AfaI GTAC 1 cut(s) 590
AfiI CCNNNNNNNGG 3 cut(s) 109, 697, 698
AgsI TTSAA 4 cut(s) 94, 134, 368, 508
AhlI ACTAGT 1 cut(s) 376
AluBI AGCT 3 cut(s) 100, 150, 669
AluI AGCT 3 cut(s) 100, 150, 669
Alw21I GWGCWC 2 cut(s) 110, 248
Alw26I GTCTC 2 cut(s) 181, 407
AlwI GGATC 3 cut(s) 12, 151, 569
AoxI GGCC 3 cut(s) 61, 296, 467
ApeKI GCWGC 2 cut(s) 684, 687
Asp700I GAANNNNTTC 1 cut(s) 607
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 155, 296
AsuHPI GGTGA 4 cut(s) 46, 351, 688, 738
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 1 cut(s) 155
BaeI ACNNNNGTAYC 2 cut(s) 621, 654
BamHI GGATCC 1 cut(s) 4
Bbv12I GWGCWC 2 cut(s) 110, 248
BbvI GCAGC 2 cut(s) 696, 699
BccI CCATC 2 cut(s) 271, 614
BceAI ACGGC 1 cut(s) 454
BclI TGATCA 1 cut(s) 256
BcoDI GTCTC 2 cut(s) 181, 407
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 4 cut(s) 191, 377, 494, 666
BisI GCNGC 5 cut(s) 117, 195, 423, 685, 688
BlsI GCNGC 5 cut(s) 118, 196, 424, 686, 689
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 2 cut(s) 155, 296
BmiI GGNNCC 2 cut(s) 6, 289
BmsI GCATC 1 cut(s) 217
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 3 cut(s) 484, 557, 757
Bsa29I ATCGAT 1 cut(s) 708
BsaJI CCNNGG 2 cut(s) 58, 299
BsaWI WCCGGW 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 697, 698
BseCI ATCGAT 1 cut(s) 708
BseDI CCNNGG 2 cut(s) 58, 299
BseGI GGATG 1 cut(s) 550
BseLI CCNNNNNNNGG 3 cut(s) 109, 697, 698
BseMII CTCAG 2 cut(s) 206, 492
BseRI GAGGAG 2 cut(s) 191, 599
BseXI GCAGC 2 cut(s) 696, 699
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 3 cut(s) 63, 298, 469
BshVI ATCGAT 1 cut(s) 708
BsiHKAI GWGCWC 2 cut(s) 110, 248
BsiSI CCGG 1 cut(s) 103
BslI CCNNNNNNNGG 3 cut(s) 109, 697, 698
BsmAI GTCTC 2 cut(s) 181, 407
BsmI GAATGC 1 cut(s) 160
BsnI GGCC 3 cut(s) 63, 298, 469
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 110, 248
Bsp143I GATC 5 cut(s) 4, 143, 256, 561, 705
BspACI CCGC 7 cut(s) 14, 75, 117, 158, 194, 422, 592
BspANI GGCC 3 cut(s) 63, 298, 469
BspCNI CTCAG 2 cut(s) 207, 493
BspDI ATCGAT 1 cut(s) 708
BspFNI CGCG 1 cut(s) 119
BspHI TCATGA 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 6, 289
BspPI GGATC 3 cut(s) 12, 151, 569
BspT104I TTCGAA 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 58, 299
BssMI GATC 5 cut(s) 4, 143, 256, 561, 705
BssT1I CCWWGG 1 cut(s) 299
Bst6I CTCTTC 3 cut(s) 15, 363, 576
BstAPI GCANNNNNTGC 1 cut(s) 203
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 4 cut(s) 215, 501, 557, 672
BstF5I GGATG 1 cut(s) 550
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 5 cut(s) 7, 146, 259, 564, 708
BstMAI GTCTC 2 cut(s) 181, 407
BstMBI GATC 5 cut(s) 4, 143, 256, 561, 705
BstMWI GCNNNNNNNGC 2 cut(s) 203, 787
BstNSI RCATGY 1 cut(s) 429
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 696, 699
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Bsu15I ATCGAT 1 cut(s) 708
BsuRI GGCC 3 cut(s) 63, 298, 469
BsuTUI ATCGAT 1 cut(s) 708
BtsCI GGATG 1 cut(s) 550
BtsIMutI CAGTG 2 cut(s) 227, 721
Cac8I GCNNGC 1 cut(s) 248
CciI TCATGA 1 cut(s) 259
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 155, 296
ClaI ATCGAT 1 cut(s) 708
Csp6I GTAC 1 cut(s) 589
CviAII CATG 3 cut(s) 260, 426, 432
CviQI GTAC 1 cut(s) 589
DdeI CTNAG 4 cut(s) 215, 501, 557, 672
DpnI GATC 5 cut(s) 6, 145, 258, 563, 707
DpnII GATC 5 cut(s) 4, 143, 256, 561, 705
Eam1104I CTCTTC 3 cut(s) 15, 363, 576
EarI CTCTTC 3 cut(s) 15, 363, 576
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 155
Eco57I CTGAAG 3 cut(s) 372, 500, 600
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 3 cut(s) 263, 429, 435
FaiI YATR 7 cut(s) 255, 261, 427, 433, 452, 630, 783
FatI CATG 3 cut(s) 259, 425, 431
FbaI TGATCA 1 cut(s) 256
FblI GTMKAC 1 cut(s) 24
Fnu4HI GCNGC 5 cut(s) 117, 195, 423, 685, 688
FokI GGATG 1 cut(s) 557
Fsp4HI GCNGC 5 cut(s) 117, 195, 423, 685, 688
FspAI RTGCGCAY 1 cut(s) 207
FspBI CTAG 4 cut(s) 191, 377, 494, 666
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 1 cut(s) 207
GluI GCNGC 5 cut(s) 117, 195, 423, 685, 688
HaeIII GGCC 3 cut(s) 63, 298, 469
HapII CCGG 1 cut(s) 103
HhaI GCGC 1 cut(s) 208
Hin1II CATG 3 cut(s) 263, 429, 435
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 8 cut(s) 41, 82, 181, 217, 341, 383, 694, 725
HpaII CCGG 1 cut(s) 103
HphI GGTGA 4 cut(s) 46, 351, 688, 738
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 6 cut(s) 38, 112, 186, 287, 519, 619
Hpy188III TCNNGA 4 cut(s) 86, 153, 260, 774
Hpy8I GTNNAC 1 cut(s) 25
Hpy99I CGWCG 2 cut(s) 29, 129
HpyAV CCTTC 4 cut(s) 128, 232, 347, 535
HpyCH4V TGCA 2 cut(s) 754, 781
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 787
HpyF3I CTNAG 4 cut(s) 215, 501, 557, 672
Hsp92II CATG 3 cut(s) 263, 429, 435
HspAI GCGC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 5 cut(s) 4, 143, 256, 561, 705
LmnI GCTCC 1 cut(s) 105
LpnPI CCDG 8 cut(s) 116, 138, 304, 338, 375, 402, 597, 683
Lsp1109I GCAGC 2 cut(s) 696, 699
LweI GCATC 1 cut(s) 217
MaeI CTAG 4 cut(s) 191, 377, 494, 666
MaeIII GTNAC 3 cut(s) 224, 716, 758
MalI GATC 5 cut(s) 6, 145, 258, 563, 707
MboI GATC 5 cut(s) 4, 143, 256, 561, 705
MboII GAAGA 7 cut(s) 106, 380, 532, 560, 560, 593, 715
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 110, 248
MluCI AATT 2 cut(s) 89, 607
MlyI GAGTC 4 cut(s) 50, 76, 226, 392
MmeI TCCRAC 1 cut(s) 213
MroXI GAANNNNTTC 1 cut(s) 607
MslI CAYNNNNRTG 2 cut(s) 430, 633
MspI CCGG 1 cut(s) 103
Mva1269I GAATGC 1 cut(s) 160
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 203, 787
NdeII GATC 5 cut(s) 4, 143, 256, 561, 705
NlaIII CATG 3 cut(s) 263, 429, 435
NlaIV GGNNCC 2 cut(s) 6, 289
NmeAIII GCCGAG 1 cut(s) 39
NmuCI GTSAC 1 cut(s) 716
NsbI TGCGCA 1 cut(s) 207
NspI RCATGY 1 cut(s) 429
NspV TTCGAA 1 cut(s) 164
PagI TCATGA 1 cut(s) 259
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 116
PctI GAATGC 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 607
PfeI GAWTC 4 cut(s) 181, 341, 694, 725
PkrI GCNGC 5 cut(s) 118, 196, 424, 686, 689
PleI GAGTC 4 cut(s) 49, 76, 225, 391
PpsI GAGTC 4 cut(s) 49, 76, 225, 391
PspN4I GGNNCC 2 cut(s) 6, 289
PspPI GGNCC 2 cut(s) 155, 296
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 590
RsaNI GTAC 1 cut(s) 589
RseI CAYNNNNRTG 2 cut(s) 430, 633
SalI GTCGAC 1 cut(s) 23
SatI GCNGC 5 cut(s) 117, 195, 423, 685, 688
Sau3AI GATC 5 cut(s) 4, 143, 256, 561, 705
Sau96I GGNCC 2 cut(s) 155, 296
SchI GAGTC 4 cut(s) 50, 76, 226, 392
SduI GDGCHC 2 cut(s) 110, 248
SetI ASST 8 cut(s) 54, 102, 152, 364, 443, 671, 678, 742
SfaNI GCATC 1 cut(s) 217
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 155
SmiMI CAYNNNNRTG 2 cut(s) 430, 633
SmlI CTYRAG 3 cut(s) 463, 536, 772
SmoI CTYRAG 3 cut(s) 463, 536, 772
SpeI ACTAGT 1 cut(s) 376
Sse9I AATT 2 cut(s) 89, 607
SsiI CCGC 7 cut(s) 14, 75, 117, 158, 194, 422, 592
SspMI CTAG 4 cut(s) 191, 377, 494, 666
StyI CCWWGG 1 cut(s) 299
TaqI TCGA 5 cut(s) 24, 44, 87, 164, 708
TaqII GACCGA 1 cut(s) 279
TasI AATT 2 cut(s) 89, 607
TauI GCSGC 3 cut(s) 119, 197, 425
TfiI GAWTC 4 cut(s) 181, 341, 694, 725
TscAI CASTG 2 cut(s) 227, 721
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 2 cut(s) 684, 687
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 5 cut(s) 333, 333, 420, 543, 561
TspGWI ACGGA 1 cut(s) 142
TspRI CASTG 2 cut(s) 227, 721
VpaK11BI GGWCC 1 cut(s) 155
XceI RCATGY 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 607
XspI CTAG 4 cut(s) 191, 377, 494, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.