Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

12783493 .. 12784522

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20571.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGATGCTATTAGCCAATCTTCTACACTCGAGGGGATTCCACATTATCTTTTTCAACACCGAGTTCAACCACCGGCGCTTAGTCCGGTCCAAAGGTTCCGACTTAGCCGTTGAGGGCCTGGTGGATTTCCGGTTCGAGACCATACCGGACGGTTTGCCACCTTCGGACAAAGATGCAACTCAAGATGTTCCGGCATTGTGTGACTCTACTAGGAAAACATGTCTAGGTCCATTCAAAGAGCTGCTCGTTAAGGTCAATTCGTCAGGCGAAGGGCCGCAAGTTAATTGTGTAGTAACAGATGGTGTCATGGGATTTGGGAGGGATGCTGCTAAGGAATTAGGGATTCCAGAGCAGCAAACAAATTGCCATTTCGCATGTACTAATTGGGAAATTGGAATGGAGGTGAACAATGATGTCAAGCGCGACGAGATTGAAGAGCTGGTTAAGGAAATGCTGGAAGGTGAGAAAGGGATAAAACTGAGGGAGAAGGCAAAGCAATGGAAGAACAAAGCAGTGGAAGCTACTAGTATAGGTGGATCATCGTATAATAATTTTGTGAAGAAGTACTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

191

Amino Acids

21.29

Weight (kDa)

5.86

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	423
AciI	CCGC	1 cut(s)	275
AclWI	GGATC	1 cut(s)	544
AfaI	GTAC	2 cut(s)	379, 566
AflIII	ACRYGT	1 cut(s)	218
AgsI	TTSAA	4 cut(s)	55, 67, 235, 434
AhlI	ACTAGT	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	117
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
AluBI	AGCT	3 cut(s)	241, 439, 521
AluI	AGCT	3 cut(s)	241, 439, 521
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	544
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	115, 272
ApeKI	GCWGC	3 cut(s)	241, 326, 352
AspLEI	GCGC	2 cut(s)	78, 423
AspS9I	GGNCC	4 cut(s)	87, 115, 227, 272
AsuHPI	GGTGA	2 cut(s)	415, 473
AvaI	CYCGRG	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	87, 227
BarI	GAAGNNNNNNTAC	1 cut(s)	551
BbvI	GCAGC	3 cut(s)	228, 313, 364
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	92
BciT130I	CCWGG	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	131
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	3 cut(s)	210, 224, 525
BfoI	RGCGCY	1 cut(s)	79
BisI	GCNGC	4 cut(s)	242, 275, 327, 353
BlsI	GCNGC	4 cut(s)	243, 276, 328, 354
BmcAI	AGTACT	1 cut(s)	566
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	2 cut(s)	87, 227
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	4 cut(s)	87, 115, 227, 272
BmiI	GGNNCC	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	163, 313
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	131
BsaWI	WCCGGW	3 cut(s)	84, 129, 145
Bse118I	RCCGGY	1 cut(s)	72
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	1 cut(s)	470
BseXI	GCAGC	3 cut(s)	228, 313, 364
Bsh1236I	CGCG	1 cut(s)	423
BshFI	GGCC	2 cut(s)	117, 274
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	5 cut(s)	73, 85, 130, 146, 191
BsmAI	GTCTC	1 cut(s)	131
BsnI	GGCC	2 cut(s)	117, 274
Bso31I	GGTCTC	1 cut(s)	131
BsoBI	CYCGRG	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	536
BspACI	CCGC	1 cut(s)	275
BspANI	GGCC	2 cut(s)	117, 274
BspCNI	CTCAG	1 cut(s)	471
BspFNI	CGCG	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	544
BspQI	GCTCTTC	1 cut(s)	429
BspTNI	GGTCTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssMI	GATC	1 cut(s)	536
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	429
BstDEI	CTNAG	4 cut(s)	79, 103, 330, 479
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	1 cut(s)	423
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	78, 423
BstKTI	GATC	1 cut(s)	539
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	536
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNI	CCWGG	1 cut(s)	119
BstNSI	RCATGY	2 cut(s)	222, 378
BstSCI	CCNGG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	423
BstV1I	GCAGC	3 cut(s)	228, 313, 364
BsuRI	GGCC	2 cut(s)	117, 274
BtsCI	GGATG	1 cut(s)	328
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	519
CfoI	GCGC	2 cut(s)	78, 423
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	4 cut(s)	87, 115, 227, 272
Csp6I	GTAC	2 cut(s)	378, 565
CviAII	CATG	3 cut(s)	219, 307, 375
CviJI	RGCY	7 cut(s)	14, 107, 117, 241, 274, 439, 521
CviKI_1	RGCY	7 cut(s)	14, 107, 117, 241, 274, 439, 521
CviQI	GTAC	2 cut(s)	378, 565
DdeI	CTNAG	4 cut(s)	79, 103, 330, 479
DpnI	GATC	1 cut(s)	538
DpnII	GATC	1 cut(s)	536
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	87, 227
Eco88I	CYCGRG	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	117
FaeI	CATG	3 cut(s)	222, 310, 378
FaiI	YATR	6 cut(s)	143, 220, 308, 376, 530, 546
FatI	CATG	3 cut(s)	218, 306, 374
Fnu4HI	GCNGC	4 cut(s)	242, 275, 327, 353
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	242, 275, 327, 353
FspBI	CTAG	3 cut(s)	210, 224, 525
GlaI	GCGC	2 cut(s)	77, 422
GluI	GCNGC	4 cut(s)	242, 275, 327, 353
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	117, 274
HapII	CCGG	5 cut(s)	73, 85, 130, 146, 191
HhaI	GCGC	2 cut(s)	78, 423
Hin1II	CATG	3 cut(s)	222, 310, 378
Hin6I	GCGC	2 cut(s)	76, 421
HinP1I	GCGC	2 cut(s)	76, 421
HinfI	GANTC	3 cut(s)	36, 203, 343
HpaII	CCGG	5 cut(s)	73, 85, 130, 146, 191
HphI	GGTGA	2 cut(s)	415, 473
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	100, 166
Hpy188III	TCNNGA	3 cut(s)	136, 182, 347
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	1 cut(s)	428
HpyAV	CCTTC	4 cut(s)	171, 263, 452, 481
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	4 cut(s)	79, 103, 330, 479
Hsp92II	CATG	3 cut(s)	222, 310, 378
HspAI	GCGC	2 cut(s)	76, 421
Kzo9I	GATC	1 cut(s)	536
LguI	GCTCTTC	1 cut(s)	429
Lsp1109I	GCAGC	3 cut(s)	228, 313, 364
LweI	GCATC	2 cut(s)	163, 313
MaeI	CTAG	3 cut(s)	210, 224, 525
MaeIII	GTNAC	2 cut(s)	200, 292
MalI	GATC	1 cut(s)	538
MboI	GATC	1 cut(s)	536
MboII	GAAGA	4 cut(s)	11, 446, 514, 571
MluCI	AATT	7 cut(s)	256, 283, 335, 361, 382, 390, 550
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	5 cut(s)	24, 106, 312, 394, 474
MseI	TTAA	3 cut(s)	249, 282, 444
MspI	CCGG	5 cut(s)	73, 85, 130, 146, 191
MspR9I	CCNGG	1 cut(s)	119
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	1 cut(s)	536
NlaIII	CATG	3 cut(s)	222, 310, 378
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	2 cut(s)	222, 378
PaeR7I	CTCGAG	1 cut(s)	28
PciI	ACATGT	1 cut(s)	218
PciSI	GCTCTTC	1 cut(s)	429
PfeI	GAWTC	2 cut(s)	36, 343
PkrI	GCNGC	4 cut(s)	243, 276, 328, 354
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PscI	ACATGT	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	117
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	4 cut(s)	87, 115, 227, 272
PspXI	VCTCGAGB	1 cut(s)	28
RsaI	GTAC	2 cut(s)	379, 566
RsaNI	GTAC	2 cut(s)	378, 565
SapI	GCTCTTC	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	249, 282, 444
SatI	GCNGC	4 cut(s)	242, 275, 327, 353
Sau3AI	GATC	1 cut(s)	536
Sau96I	GGNCC	4 cut(s)	87, 115, 227, 272
ScaI	AGTACT	1 cut(s)	566
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	119
SfaNI	GCATC	2 cut(s)	163, 313
Sfr274I	CTCGAG	1 cut(s)	28
SgrAI	CRCCGGYG	1 cut(s)	72
SinI	GGWCC	2 cut(s)	87, 227
SlaI	CTCGAG	1 cut(s)	28
SmlI	CTYRAG	2 cut(s)	28, 180
SmoI	CTYRAG	2 cut(s)	28, 180
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	7 cut(s)	256, 283, 335, 361, 382, 390, 550
SsiI	CCGC	1 cut(s)	275
SspMI	CTAG	3 cut(s)	210, 224, 525
StyD4I	CCNGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	29, 135
TasI	AATT	7 cut(s)	256, 283, 335, 361, 382, 390, 550
TatI	WGTACW	2 cut(s)	377, 564
TauI	GCSGC	1 cut(s)	277
TfiI	GAWTC	2 cut(s)	36, 343
Tru1I	TTAA	3 cut(s)	249, 282, 444
Tru9I	TTAA	3 cut(s)	249, 282, 444
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	3 cut(s)	241, 326, 352
Tsp45I	GTSAC	1 cut(s)	200
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	2 cut(s)	87, 227
XceI	RCATGY	2 cut(s)	222, 378
XhoI	CTCGAG	1 cut(s)	28
XspI	CTAG	3 cut(s)	210, 224, 525
ZrmI	AGTACT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.