Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

66325742 .. 66326566

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG493500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGATTCCATTGCATTGACACACAAGCCACATGCAATTTGCATACCATTCCCGGCTCAAGGTCACATAAACCCAATGCTGAAACTAGCCAAACTCCTTCACCACAAAGGGTTTCATATAACTTTTGTCAACACAGAGTACAACCATAAGCGCCTACTGAAATCTCGAGGCCCCAACTCCCTTGATGGCCTTCCCTCCTTTACATTTGAGACCATTCCCGATGGCCTCCCTCCCACTGATGCCAATGCTACGCAAGACATAGCATCCCTTTGCGTATCCACAAGGACAAAGTGCCTACCATACTTCAGGGAACTTCTCTCCAAGCTGAACTCTATGCCGAATATTCCTCTGGTCAGTTGCATTGTTTCGGATGGCGTCATGAGCTTCACTGTTGAGGCAGCTCAAGAACTGGACCTTCCCGAAGTTCTTTTCTGGACAACTAGTGCTTGTGGCTTCATGGCCTACATGCAGTATCAGAATCTCATTGATGAGGGTCTCATTCCTCTTAAAGGTATATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

173

Amino Acids

19.22

Weight (kDa)

6.36

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	13 - 145	1.7e-08	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	289
AcyI	GRCGYC	1 cut(s)	375
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	59, 509
AhlI	ACTAGT	1 cut(s)	440
AluBI	AGCT	3 cut(s)	325, 384, 401
AluI	AGCT	3 cut(s)	325, 384, 401
Alw26I	GTCTC	2 cut(s)	203, 500
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	4 cut(s)	169, 187, 223, 459
ApeKI	GCWGC	1 cut(s)	398
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	170, 412
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	92
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	412
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	3 cut(s)	179, 215, 365
BciVI	GTATCC	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	203, 500
BcuI	ACTAGT	1 cut(s)	440
BfaI	CTAG	2 cut(s)	86, 441
BfoI	RGCGCY	1 cut(s)	154
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	1 cut(s)	53
Bme18I	GGWCC	1 cut(s)	412
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	2 cut(s)	170, 412
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	53
BmsI	GCATC	2 cut(s)	229, 272
BpuEI	CTTGAG	2 cut(s)	42, 387
BpuMI	CCSGG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	375
BsaI	GGTCTC	2 cut(s)	203, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 509
Bse1I	ACTGG	1 cut(s)	414
Bse3DI	GCAATG	1 cut(s)	9
BseGI	GGATG	2 cut(s)	263, 376
BseLI	CCNNNNNNNGG	2 cut(s)	59, 509
BseMI	GCAATG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	410
BshFI	GGCC	4 cut(s)	171, 189, 225, 461
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	59, 509
BsmAI	GTCTC	2 cut(s)	203, 500
BsnI	GGCC	4 cut(s)	171, 189, 225, 461
Bso31I	GGTCTC	2 cut(s)	203, 500
BsoBI	CYCGRG	1 cut(s)	165
BspANI	GGCC	4 cut(s)	171, 189, 225, 461
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	172
BspTNI	GGTCTC	2 cut(s)	203, 500
BsrDI	GCAATG	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	414
BssNI	GRCGYC	1 cut(s)	375
Bst4CI	ACNGT	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	375
BstENI	CCTNNNNNAGG	1 cut(s)	507
BstF5I	GGATG	2 cut(s)	263, 376
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstMAI	GTCTC	2 cut(s)	203, 500
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNSI	RCATGY	2 cut(s)	35, 469
BstSCI	CCNGG	1 cut(s)	51
BstV1I	GCAGC	1 cut(s)	410
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	4 cut(s)	171, 189, 225, 461
BtsCI	GGATG	2 cut(s)	263, 376
BtsIMutI	CAGTG	2 cut(s)	234, 387
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	2 cut(s)	170, 412
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	4 cut(s)	32, 379, 457, 466
CviQI	GTAC	1 cut(s)	139
Eco31I	GGTCTC	2 cut(s)	203, 500
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	289
Eco88I	CYCGRG	1 cut(s)	165
EcoNI	CCTNNNNNAGG	1 cut(s)	507
EcoO109I	RGGNCCY	1 cut(s)	170
FaeI	CATG	4 cut(s)	35, 382, 460, 469
FatI	CATG	4 cut(s)	31, 378, 456, 465
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	2 cut(s)	250, 383
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	2 cut(s)	86, 441
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	399
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	4 cut(s)	171, 189, 225, 461
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	1 cut(s)	153
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	4 cut(s)	35, 382, 460, 469
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	5, 478
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	370, 477
Hpy188III	TCNNGA	6 cut(s)	165, 218, 379, 404, 419, 433
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	107, 200, 425
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	5 cut(s)	14, 35, 42, 360, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	4 cut(s)	35, 382, 460, 469
HspAI	GCGC	1 cut(s)	151
LpnPI	CCDG	5 cut(s)	66, 292, 335, 395, 418
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	2 cut(s)	229, 272
MaeI	CTAG	2 cut(s)	86, 441
MaeIII	GTNAC	1 cut(s)	62
MluCI	AATT	1 cut(s)	36
MnlI	CCTC	8 cut(s)	161, 205, 236, 240, 357, 388, 484, 513
MseI	TTAA	2 cut(s)	507, 520
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	1 cut(s)	381
NciI	CCSGG	1 cut(s)	53
NlaIII	CATG	4 cut(s)	35, 382, 460, 469
NlaIV	GGNNCC	1 cut(s)	172
NmuCI	GTSAC	1 cut(s)	62
NspI	RCATGY	2 cut(s)	35, 469
PaeR7I	CTCGAG	1 cut(s)	165
PagI	TCATGA	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	5, 478
PkrI	GCNGC	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	170, 412
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	2 cut(s)	507, 520
SatI	GCNGC	1 cut(s)	399
Sau96I	GGNCC	2 cut(s)	170, 412
ScrFI	CCNGG	1 cut(s)	53
SetI	ASST	6 cut(s)	64, 327, 386, 403, 417, 514
SfaNI	GCATC	2 cut(s)	229, 272
Sfr274I	CTCGAG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	412
SlaI	CTCGAG	1 cut(s)	165
SmlI	CTYRAG	3 cut(s)	57, 165, 402
SmoI	CTYRAG	3 cut(s)	57, 165, 402
SpeI	ACTAGT	1 cut(s)	440
Sse9I	AATT	1 cut(s)	36
SspI	AATATT	1 cut(s)	343
SspMI	CTAG	2 cut(s)	86, 441
StyD4I	CCNGG	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	36
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	5, 478
Tru1I	TTAA	2 cut(s)	507, 520
Tru9I	TTAA	2 cut(s)	507, 520
TscAI	CASTG	2 cut(s)	241, 394
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	104, 445
TspRI	CASTG	2 cut(s)	241, 394
VpaK11BI	GGWCC	1 cut(s)	412
XagI	CCTNNNNNAGG	1 cut(s)	507
XceI	RCATGY	2 cut(s)	35, 469
XhoI	CTCGAG	1 cut(s)	165
XspI	CTAG	2 cut(s)	86, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.