Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

9884837 .. 9887062

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1053100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGATGAGTTCAGTAGAACAAGCAACCAAAAAAGGGCATGCAGTTTTCATCCCATACCCAGCACAAGGCCATGTTAACCCCATGATGCAATTAGCCAAGCTTCTTCACTCAAGGGGCTTCCACATAACCTTTGTCAACACCGAGTTCAACCACAACCGTTTAATCCGGTCAAAAGGTCCCGACTCCGTTAAGGGTCTACCGGACTTTGTGTTCGAGACCATACCGGACGGGTTGCCTCCTTCGGATAAGGATGGAACCCAAGATATTCTAGCTTTATGTGACTCCATTAAGAAAACTTTTCATGGTCCATTTAAAGAGCTTGTCACTAAGATAAATTCCTTACCTCAAGTGCCACAAGTTACTTGCATTGTTGCAGATGGTGTCATGACCTTTGGGAGCAAAGCAGCTAGAGAATTAGGCATTCCGGAGGTTCAGTTATGGACAACCTTTGCTTGTGGCTTCATGGCGTACTTGCAATACAGCGAATTCGTCAAACGTGGCATTAATCCGTTCAAAGATGAGAATTTCATGCATGATGGCACACTCGATACACCAATTGATTGGATCCCAAGCATGAAAAATGTTCGACTCAAGGACATCCCGAGTTTCATTAGAGTTACTGATTTCAGCGACGTAATGTTTAATTACTTGGGATCCAAAGCACGAAACTGTTTGAACTCTTCTGCAATCCTCTTCAACACATTTGACGAATTCAAACACAAAGTGTTAGAGGTAATATCGACAATGTTCCCCAACATTTACACCATCGGCCCCCTTAATTTGCTTGGCAGGCATTTTCTCGAAAGCAAGTCACTTAACTCAAGCTTATTGAAAGAAAACAAAAAATGTTTGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

286

Amino Acids

32.1

Weight (kDa)

8.2

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	15 - 59	7.2e-08	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	424
AclWI	GGATC	4 cut(s)	559, 572, 648, 661
AcsI	RAATTY	4 cut(s)	334, 485, 523, 710
AdeI	CACNNNGTG	1 cut(s)	724
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	2 cut(s)	33, 65
AgsI	TTSAA	6 cut(s)	148, 514, 676, 697, 715, 832
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
AluBI	AGCT	5 cut(s)	100, 272, 319, 407, 825
AluI	AGCT	5 cut(s)	100, 272, 319, 407, 825
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	4 cut(s)	559, 572, 648, 661
Ama87I	CYCGRG	1 cut(s)	601
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	2 cut(s)	67, 769
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	4 cut(s)	334, 485, 523, 710
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AseI	ATTAAT	1 cut(s)	504
AspS9I	GGNCC	3 cut(s)	176, 305, 770
AvaI	CYCGRG	1 cut(s)	601
AvaII	GGWCC	2 cut(s)	176, 305
BamHI	GGATCC	2 cut(s)	564, 653
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	4 cut(s)	245, 371, 530, 773
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	2 cut(s)	269, 408
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme18I	GGWCC	2 cut(s)	176, 305
BmeT110I	CYCGRG	1 cut(s)	601
BmgT120I	GGNCC	3 cut(s)	176, 305, 770
BmiI	GGNNCC	5 cut(s)	178, 256, 566, 655, 772
BmsI	GCATC	1 cut(s)	75
BpuEI	CTTGAG	4 cut(s)	94, 330, 575, 805
BsaI	GGTCTC	1 cut(s)	209
BsaWI	WCCGGW	4 cut(s)	165, 199, 223, 424
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 65
BseAI	TCCGGA	1 cut(s)	424
BseGI	GGATG	3 cut(s)	48, 256, 597
BseLI	CCNNNNNNNGG	2 cut(s)	33, 65
BseXI	GCAGC	1 cut(s)	416
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	69, 771
BsiHKCI	CYCGRG	1 cut(s)	601
BsiSI	CCGG	4 cut(s)	166, 200, 224, 425
BslFI	GGGAC	1 cut(s)	162
BslI	CCNNNNNNNGG	2 cut(s)	33, 65
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	162
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	2 cut(s)	69, 771
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	601
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	564, 653
BspANI	GGCC	2 cut(s)	69, 771
BspEI	TCCGGA	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	5 cut(s)	178, 256, 566, 655, 772
BspPI	GGATC	4 cut(s)	559, 572, 648, 661
BspTNI	GGTCTC	1 cut(s)	209
BssMI	GATC	2 cut(s)	564, 653
Bst4CI	ACNGT	2 cut(s)	158, 671
Bst6I	CTCTTC	2 cut(s)	685, 698
BstC8I	GCNNGC	2 cut(s)	39, 791
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	48, 256, 597
BstKTI	GATC	2 cut(s)	567, 656
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	2 cut(s)	564, 653
BstMWI	GCNNNNNNNGC	1 cut(s)	790
BstNSI	RCATGY	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	416
BstX2I	RGATCY	2 cut(s)	564, 653
BstXI	CCANNNNNNTGG	1 cut(s)	561
BstYI	RGATCY	2 cut(s)	564, 653
BsuRI	GGCC	2 cut(s)	69, 771
BtsCI	GGATG	3 cut(s)	48, 256, 597
Cac8I	GCNNGC	2 cut(s)	39, 791
CciI	TCATGA	1 cut(s)	384
Cfr13I	GGNCC	3 cut(s)	176, 305, 770
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	9 cut(s)	38, 71, 82, 302, 385, 463, 529, 533, 574
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	2 cut(s)	566, 655
DpnII	GATC	2 cut(s)	564, 653
DraI	TTTAAA	1 cut(s)	313
DraIII	CACNNNGTG	1 cut(s)	724
Eam1104I	CTCTTC	2 cut(s)	685, 698
EarI	CTCTTC	2 cut(s)	685, 698
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	176, 305
Eco88I	CYCGRG	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRI	GAATTC	2 cut(s)	485, 710
EcoT22I	ATGCAT	1 cut(s)	534
FaeI	CATG	9 cut(s)	41, 74, 85, 305, 388, 466, 532, 536, 577
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	9 cut(s)	37, 70, 81, 301, 384, 462, 528, 532, 573
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	3 cut(s)	35, 263, 584
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	2 cut(s)	269, 408
GluI	GCNGC	1 cut(s)	405
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	69, 771
HapII	CCGG	4 cut(s)	166, 200, 224, 425
Hin1II	CATG	9 cut(s)	41, 74, 85, 305, 388, 466, 532, 536, 577
HincII	GTYRAC	2 cut(s)	76, 136
HindII	GTYRAC	2 cut(s)	76, 136
HindIII	AAGCTT	2 cut(s)	98, 823
HinfI	GANTC	3 cut(s)	182, 281, 588
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	4 cut(s)	166, 200, 224, 425
Hpy166II	GTNNAC	3 cut(s)	76, 136, 197
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	6 cut(s)	179, 214, 385, 425, 601, 800
Hpy8I	GTNNAC	3 cut(s)	76, 136, 197
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	2 cut(s)	158, 671
HpyCH4IV	ACGT	2 cut(s)	496, 633
HpyCH4V	TGCA	7 cut(s)	41, 88, 366, 374, 475, 532, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	790
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	2 cut(s)	496, 633
Hsp92II	CATG	9 cut(s)	41, 74, 85, 305, 388, 466, 532, 536, 577
Kpn2I	TCCGGA	1 cut(s)	424
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	564, 653
LmnI	GCTCC	1 cut(s)	396
LpnPI	CCDG	6 cut(s)	72, 179, 213, 237, 438, 775
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	2 cut(s)	269, 408
MaeII	ACGT	2 cut(s)	496, 633
MaeIII	GTNAC	5 cut(s)	278, 322, 358, 616, 810
MalI	GATC	2 cut(s)	566, 655
MboI	GATC	2 cut(s)	564, 653
MboII	GAAGA	3 cut(s)	95, 672, 685
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	2 cut(s)	564, 653
MluCI	AATT	9 cut(s)	89, 334, 413, 485, 523, 555, 643, 710, 778
MlyI	GAGTC	3 cut(s)	176, 275, 582
MnlI	CCTC	5 cut(s)	246, 354, 421, 701, 724
Mph1103I	ATGCAT	1 cut(s)	534
MroI	TCCGGA	1 cut(s)	424
MseI	TTAA	9 cut(s)	75, 161, 189, 288, 312, 504, 642, 777, 816
MspI	CCGG	4 cut(s)	166, 200, 224, 425
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	790
NdeII	GATC	2 cut(s)	564, 653
NlaIII	CATG	9 cut(s)	41, 74, 85, 305, 388, 466, 532, 536, 577
NlaIV	GGNNCC	5 cut(s)	178, 256, 566, 655, 772
NmuCI	GTSAC	3 cut(s)	278, 322, 810
NsiI	ATGCAT	1 cut(s)	534
NspI	RCATGY	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	41
PagI	TCATGA	1 cut(s)	384
PctI	GAATGC	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	3 cut(s)	176, 275, 582
PpsI	GAGTC	3 cut(s)	176, 275, 582
PpuMI	RGGWCCY	1 cut(s)	176
PshBI	ATTAAT	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	5 cut(s)	178, 256, 566, 655, 772
PspPI	GGNCC	3 cut(s)	176, 305, 770
PspPPI	RGGWCCY	1 cut(s)	176
PsuI	RGATCY	2 cut(s)	564, 653
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	9 cut(s)	75, 161, 189, 288, 312, 504, 642, 777, 816
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	2 cut(s)	564, 653
Sau96I	GGNCC	3 cut(s)	176, 305, 770
SchI	GAGTC	3 cut(s)	176, 275, 582
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	2 cut(s)	176, 305
SmlI	CTYRAG	4 cut(s)	109, 345, 590, 820
SmoI	CTYRAG	4 cut(s)	109, 345, 590, 820
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	9 cut(s)	89, 334, 413, 485, 523, 555, 643, 710, 778
SspMI	CTAG	2 cut(s)	269, 408
TaaI	ACNGT	2 cut(s)	158, 671
TaiI	ACGT	2 cut(s)	499, 636
TaqI	TCGA	5 cut(s)	213, 546, 586, 740, 801
TasI	AATT	9 cut(s)	89, 334, 413, 485, 523, 555, 643, 710, 778
Tru1I	TTAA	9 cut(s)	75, 161, 189, 288, 312, 504, 642, 777, 816
Tru9I	TTAA	9 cut(s)	75, 161, 189, 288, 312, 504, 642, 777, 816
TseFI	GTSAC	3 cut(s)	278, 322, 810
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	3 cut(s)	278, 322, 810
TspDTI	ATGAA	6 cut(s)	37, 290, 451, 517, 590, 598
TspGWI	ACGGA	2 cut(s)	175, 498
VpaK11BI	GGWCC	2 cut(s)	176, 305
VspI	ATTAAT	1 cut(s)	504
XapI	RAATTY	4 cut(s)	334, 485, 523, 710
XceI	RCATGY	1 cut(s)	41
XmiI	GTMKAC	1 cut(s)	196
XspI	CTAG	2 cut(s)	269, 408
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.