Rw5G018620

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000975
Physical Location & Seq
Forward (+)
24064148 .. 24065928
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G018620.1

Sequence Viewer

Length: 561 bp
ATGGCTTCCGCTTATCATCATAAGCCTCATGCTGTTTGTATTCCAGTTCCATCTCAAAGCCACATAAAGGCTATGCTTAAATTAACCAAAATCCTCCACCACAGAGGCTTTCACATTACCTTTGTCAACACAGAATTCAACCACAAGCGATTTCTTAAGTCTCGAGGACCCAACTCCCTCGATGGCTTACCTGATTTTTACTTTGAAGCCATCCCTGATGGCATTCCGGAATCAGATGAAGATGCCACCCAAAATGGCAATTTGATTATTGACTCTGTCAGAAATCATCTCTTGGCTCCATTTCGTGACCTCCTAATAAAACTAAACACTACTAGTCCTCCAGTGACTTGCATTGTTTCAGATGGTTTCGTGTCCACTTTTACTATAACAGCTGCAGAAGAACTTGGAATCCCTATTGCATTGTTCTACACTATTTCTGCTTGCAGCTTCATGGGATTCAGGAAATTCCGTACTTTGCTTGAGAAAGGGCTTGCACCACTTAAGGGTTTGGTTATGCATCATGGTCACATATTAATGATTATAATCAATCATACCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

186

Amino Acids

20.79

Weight (kDa)

8.83

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AccIII TCCGGA 1 cut(s) 226
AciI CCGC 1 cut(s) 9
AcsI RAATTY 2 cut(s) 134, 464
AfaI GTAC 1 cut(s) 472
AfiI CCNNNNNNNGG 2 cut(s) 67, 503
AflII CTTAAG 2 cut(s) 155, 500
AgsI TTSAA 2 cut(s) 139, 206
AhlI ACTAGT 1 cut(s) 332
AjnI CCWGG 1 cut(s) 554
AloI GAACNNNNNNTCC 2 cut(s) 393, 425
AluBI AGCT 2 cut(s) 392, 447
AluI AGCT 2 cut(s) 392, 447
Alw26I GTCTC 1 cut(s) 165
Ama87I CYCGRG 1 cut(s) 162
Aor13HI TCCGGA 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 392, 444
ApoI RAATTY 2 cut(s) 134, 464
AseI ATTAAT 1 cut(s) 533
AspS9I GGNCC 1 cut(s) 167
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 379, 456
BccI CCATC 5 cut(s) 58, 176, 212, 218, 356
BciT130I CCWGG 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 165
BcuI ACTAGT 1 cut(s) 332
BfaI CTAG 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 393
BfrI CTTAAG 2 cut(s) 155, 500
BisI GCNGC 2 cut(s) 393, 445
BlsI GCNGC 2 cut(s) 394, 446
Bme1390I CCNGG 1 cut(s) 556
Bme18I GGWCC 1 cut(s) 167
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 2 cut(s) 169, 297
BmrFI CCNGG 1 cut(s) 556
BmsI GCATC 2 cut(s) 232, 526
BpmI CTGGAG 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 500
BsaBI GATNNNNATC 1 cut(s) 542
BsaWI WCCGGW 1 cut(s) 226
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 503
Bse1I ACTGG 2 cut(s) 44, 341
Bse8I GATNNNNATC 1 cut(s) 542
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 1 cut(s) 556
BseGI GGATG 1 cut(s) 210
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 2 cut(s) 67, 503
BseNI ACTGG 2 cut(s) 44, 341
BseXI GCAGC 2 cut(s) 379, 456
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 1 cut(s) 227
BslI CCNNNNNNNGG 2 cut(s) 67, 503
BsmAI GTCTC 1 cut(s) 165
BsmI GAATGC 1 cut(s) 222
BsoBI CYCGRG 1 cut(s) 162
Bsp13I TCCGGA 1 cut(s) 226
BspACI CCGC 1 cut(s) 9
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 169, 297
BspMAI CTGCAG 1 cut(s) 397
BspTI CTTAAG 2 cut(s) 155, 500
BsrI ACTGG 2 cut(s) 44, 341
Bst2UI CCWGG 1 cut(s) 556
BstAFI CTTAAG 2 cut(s) 155, 500
BstC8I GCNNGC 2 cut(s) 442, 492
BstF5I GGATG 1 cut(s) 210
BstMAI GTCTC 1 cut(s) 165
BstNI CCWGG 1 cut(s) 556
BstSCI CCNGG 1 cut(s) 554
BstSFI CTRYAG 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 379, 456
BtsCI GGATG 1 cut(s) 210
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 442, 492
Cfr13I GGNCC 1 cut(s) 167
CsiI ACCWGGT 1 cut(s) 554
Csp6I GTAC 1 cut(s) 471
CviAII CATG 3 cut(s) 29, 451, 521
CviQI GTAC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 167
Eco88I CYCGRG 1 cut(s) 162
EcoO109I RGGNCCY 1 cut(s) 167
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 554
EcoT22I ATGCAT 1 cut(s) 519
FaeI CATG 3 cut(s) 32, 454, 524
FatI CATG 3 cut(s) 28, 450, 520
Fnu4HI GCNGC 2 cut(s) 393, 445
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 393, 445
FspBI CTAG 1 cut(s) 333
GluI GCNGC 2 cut(s) 393, 445
GsuI CTGGAG 1 cut(s) 324
HapII CCGG 1 cut(s) 227
Hin1II CATG 3 cut(s) 32, 454, 524
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HinfI GANTC 4 cut(s) 230, 272, 408, 456
HpaII CCGG 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 127, 375
Hpy188I TCNGA 3 cut(s) 235, 281, 361
Hpy188III TCNNGA 4 cut(s) 162, 227, 305, 460
Hpy8I GTNNAC 2 cut(s) 127, 375
HpyCH4V TGCA 6 cut(s) 351, 395, 419, 444, 494, 517
Hsp92II CATG 3 cut(s) 32, 454, 524
Kpn2I TCCGGA 1 cut(s) 226
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 7 cut(s) 57, 204, 228, 240, 354, 445, 541
Lsp1109I GCAGC 2 cut(s) 379, 456
LweI GCATC 2 cut(s) 232, 526
MabI ACCWGGT 1 cut(s) 554
MaeI CTAG 1 cut(s) 333
MaeIII GTNAC 3 cut(s) 305, 343, 524
MboII GAAGA 2 cut(s) 251, 410
MluCI AATT 4 cut(s) 80, 134, 259, 464
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 7 cut(s) 36, 98, 104, 158, 188, 320, 348
Mph1103I ATGCAT 1 cut(s) 519
MroI TCCGGA 1 cut(s) 226
MseI TTAA 5 cut(s) 78, 83, 156, 501, 533
MslI CAYNNNNRTG 1 cut(s) 533
MspA1I CMGCKG 1 cut(s) 392
MspCI CTTAAG 2 cut(s) 155, 500
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 556
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 1 cut(s) 556
NlaIII CATG 3 cut(s) 32, 454, 524
NlaIV GGNNCC 2 cut(s) 169, 297
NmuCI GTSAC 3 cut(s) 305, 343, 524
NsiI ATGCAT 1 cut(s) 519
PaeR7I CTCGAG 1 cut(s) 162
PctI GAATGC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 230, 408, 456
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 2 cut(s) 394, 446
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PpuMI RGGWCCY 1 cut(s) 167
PshBI ATTAAT 1 cut(s) 533
PsiI TTATAA 1 cut(s) 542
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 1 cut(s) 554
PspGI CCWGG 1 cut(s) 554
PspN4I GGNNCC 2 cut(s) 169, 297
PspPI GGNCC 1 cut(s) 167
PspPPI RGGWCCY 1 cut(s) 167
PstI CTGCAG 1 cut(s) 397
PsyI GACNNNGTC 1 cut(s) 275
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 533
SaqAI TTAA 5 cut(s) 78, 83, 156, 501, 533
SatI GCNGC 2 cut(s) 393, 445
Sau96I GGNCC 1 cut(s) 167
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 556
SetI ASST 6 cut(s) 122, 193, 312, 394, 449, 560
SexAI ACCWGGT 1 cut(s) 554
SfaNI GCATC 2 cut(s) 232, 526
SfcI CTRYAG 1 cut(s) 393
Sfr274I CTCGAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 167
SlaI CTCGAG 1 cut(s) 162
SmiMI CAYNNNNRTG 1 cut(s) 533
SmlI CTYRAG 4 cut(s) 155, 162, 479, 500
SmoI CTYRAG 4 cut(s) 155, 162, 479, 500
SpeI ACTAGT 1 cut(s) 332
Sse9I AATT 4 cut(s) 80, 134, 259, 464
SsiI CCGC 1 cut(s) 9
SspMI CTAG 1 cut(s) 333
StyD4I CCNGG 1 cut(s) 554
TaqI TCGA 2 cut(s) 163, 180
TasI AATT 4 cut(s) 80, 134, 259, 464
TfiI GAWTC 3 cut(s) 230, 408, 456
Tru1I TTAA 5 cut(s) 78, 83, 156, 501, 533
Tru9I TTAA 5 cut(s) 78, 83, 156, 501, 533
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 3 cut(s) 305, 343, 524
TseI GCWGC 2 cut(s) 392, 444
Tsp45I GTSAC 3 cut(s) 305, 343, 524
TspDTI ATGAA 2 cut(s) 252, 439
TspGWI ACGGA 1 cut(s) 458
TspRI CASTG 1 cut(s) 348
Tth111I GACNNNGTC 1 cut(s) 275
Vha464I CTTAAG 2 cut(s) 155, 500
VpaK11BI GGWCC 1 cut(s) 167
VspI ATTAAT 1 cut(s) 533
XapI RAATTY 2 cut(s) 134, 464
XhoI CTCGAG 1 cut(s) 162
XspI CTAG 1 cut(s) 333
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.