pycom13g19930

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000975
Physical Location & Seq
Forward (+)
15857220 .. 15858014
795 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g19930.1

Sequence Viewer

Length: 531 bp
ATGGGTTCCAAAGAAGTAGGCAATAAAAAGCCTCATCTTCTTTGCATCCCTTTTCCAGCTCAAAGCCACATAAAGGCAATGCTCAAATTTGCGAAACTCCTCCACCATAGAGGTTTTCATATCACCTTTGTCAACACTGAGTTCAATCACAAACTCTATCTAAAATCTCTAGGTCCCGACTCCCTCGACGGCTTGCCTGATTTTCGGTTTGAAACCATGCCAGATGGCCTTCAAAGTTCAGATGAAGATACCACTCAAGATTTGATTTCGCTTGTTGAGTCAATCGGGAAAAACTTCACAGCTCCATTTCGTGACATCCTCATGAAACTTGATCATTCAGCAACTTGCAACAATATTCCTGCAGTGAGTCACATTGTTTCGGATGGTTGGATGGCTTTCACAGTCACAGCAGCTGAAGAAGTCGGAATCCCTGTCGTACTCTTCTTCACTATTTCTGCAAGCAGCTTCATGGGCTTCAATCAATATCCAACTTTGGAGGAAAAAGGACTTGCCCCACTCAAAGTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

177

Amino Acids

19.45

Weight (kDa)

6.03

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 1 cut(s) 73
AgsI TTSAA 4 cut(s) 145, 212, 233, 478
AluBI AGCT 4 cut(s) 59, 302, 413, 465
AluI AGCT 4 cut(s) 59, 302, 413, 465
AlwNI CAGNNNCTG 1 cut(s) 413
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 410, 462
ApoI RAATTY 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 293
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 115
AvaII GGWCC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 422, 474
BccI CCATC 3 cut(s) 218, 377, 385
BceAI ACGGC 1 cut(s) 205
BclI TGATCA 1 cut(s) 331
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 360
BisI GCNGC 2 cut(s) 411, 463
BlsI GCNGC 2 cut(s) 412, 464
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 7, 175
BmsI GCATC 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 84
BseGI GGATG 4 cut(s) 45, 315, 388, 396
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 129
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 2 cut(s) 422, 474
BshFI GGCC 1 cut(s) 228
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 159
BsnI GGCC 1 cut(s) 228
Bsp143I GATC 1 cut(s) 331
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 7, 175
BspMAI CTGCAG 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 84
BssMI GATC 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 403
Bst6I CTCTTC 1 cut(s) 446
BstC8I GCNNGC 2 cut(s) 194, 460
BstDEI CTNAG 1 cut(s) 138
BstF5I GGATG 4 cut(s) 45, 315, 388, 396
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 1 cut(s) 471
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 422, 474
BsuRI GGCC 1 cut(s) 228
BtsCI GGATG 4 cut(s) 45, 315, 388, 396
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 2 cut(s) 135, 369
Cac8I GCNNGC 2 cut(s) 194, 460
CaiI CAGNNNCTG 1 cut(s) 413
CciI TCATGA 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 173
Csp6I GTAC 1 cut(s) 437
CviAII CATG 3 cut(s) 217, 322, 469
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 1 cut(s) 446
EarI CTCTTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 435
EcoO109I RGGNCCY 1 cut(s) 173
FaeI CATG 3 cut(s) 220, 325, 472
FaiI YATR 6 cut(s) 71, 108, 120, 218, 323, 470
FaqI GGGAC 1 cut(s) 159
FatI CATG 3 cut(s) 216, 321, 468
FbaI TGATCA 1 cut(s) 331
Fnu4HI GCNGC 2 cut(s) 411, 463
FokI GGATG 4 cut(s) 32, 302, 395, 403
Fsp4HI GCNGC 2 cut(s) 411, 463
FspBI CTAG 1 cut(s) 170
GluI GCNGC 2 cut(s) 411, 463
HaeIII GGCC 1 cut(s) 228
Hin1II CATG 3 cut(s) 220, 325, 472
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 4 cut(s) 179, 278, 367, 426
HphI GGTGA 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 3 cut(s) 241, 382, 425
Hpy188III TCNNGA 5 cut(s) 176, 257, 286, 311, 322
Hpy8I GTNNAC 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 403
HpyCH4V TGCA 4 cut(s) 45, 348, 362, 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 471
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 3 cut(s) 220, 325, 472
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 5 cut(s) 69, 210, 234, 372, 444
Lsp1109I GCAGC 2 cut(s) 422, 474
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 170
MaeIII GTNAC 3 cut(s) 311, 368, 403
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 5 cut(s) 29, 257, 428, 433, 436
MluCI AATT 1 cut(s) 86
MlyI GAGTC 3 cut(s) 173, 287, 376
MmeI TCCRAC 3 cut(s) 368, 403, 512
MnlI CCTC 6 cut(s) 42, 104, 110, 194, 329, 490
MroXI GAANNNNTTC 1 cut(s) 293
MseI TTAA 1 cut(s) 529
MslI CAYNNNNRTG 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 471
NdeII GATC 1 cut(s) 331
NlaIII CATG 3 cut(s) 220, 325, 472
NlaIV GGNNCC 2 cut(s) 7, 175
NmuCI GTSAC 3 cut(s) 311, 368, 403
PagI TCATGA 1 cut(s) 321
PdmI GAANNNNTTC 1 cut(s) 293
PfeI GAWTC 1 cut(s) 426
PkrI GCNGC 2 cut(s) 412, 464
PleI GAGTC 3 cut(s) 173, 286, 375
PpsI GAGTC 3 cut(s) 173, 286, 375
PpuMI RGGWCCY 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 7, 175
PspPI GGNCC 1 cut(s) 173
PspPPI RGGWCCY 1 cut(s) 173
PstI CTGCAG 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 413
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 1 cut(s) 529
SatI GCNGC 2 cut(s) 411, 463
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 3 cut(s) 173, 287, 376
SetI ASST 7 cut(s) 61, 115, 128, 175, 304, 415, 467
SfaNI GCATC 1 cut(s) 54
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 255
SmoI CTYRAG 1 cut(s) 255
Sse9I AATT 1 cut(s) 86
SspI AATATT 1 cut(s) 355
SspMI CTAG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 403
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 86
TfiI GAWTC 1 cut(s) 426
Tru1I TTAA 1 cut(s) 529
Tru9I TTAA 1 cut(s) 529
TscAI CASTG 2 cut(s) 142, 369
TseFI GTSAC 3 cut(s) 311, 368, 403
TseI GCWGC 2 cut(s) 410, 462
Tsp45I GTSAC 3 cut(s) 311, 368, 403
TspDTI ATGAA 4 cut(s) 107, 258, 338, 457
TspRI CASTG 2 cut(s) 142, 369
VpaK11BI GGWCC 1 cut(s) 173
XapI RAATTY 1 cut(s) 86
XmnI GAANNNNTTC 1 cut(s) 293
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.