Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

15973370 .. 15975772

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00094610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGTTCCGACGAAGTAGCTAAAAAGCCTCATGTTGTTTGTGTTACACTCCCATTTCAAAGCCATATAAAGGCAATGCTCAAGCTAGCAAAACTCCTCCACCACCGAGGTTTCCATATAACCTTTGTCAACACAGAGTTCAACCACAAAAGGTTTCTTAAATCTCTCGGACCCAACTCCCTCGATGGATTGCCTGATTTCCGGTTTGAAACCATTCCAGATGGCCTTCCGATTTCAGATGAAGATGCATCGCAAGACGTCAGTTTGCTTTGCGAGTCTTTGAGGAAAAACTTCTTGGCTCCATTTCATGGCCTCCTCACAAAACTCAAGGACTTGGCAAGTACTTCAAATACTTATCCTCCGGTGACTCGCATCGTTTCAGATGGTTGGAATGCCTATGTCCTTACAGCAGCAGAAAAACATCAAATTCCAGTCACACTCTTCTTTACAATGAATGCAAGCAGCATCATGGCCTATGCACACTTCCCCACTTTGATGGAAAAAGGACTCGCACCACTCAAAGATGAGAGCTATTTGACAAACGGGTATTTGGACAAGGTCATAGATTGGATTCCGGGAATGAAGGATATCCGGTTAAGGGATCTCCCCACCAACTTTCAAGTCACAAATCCTAATGACGCGTACGGAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

217

Amino Acids

24.35

Weight (kDa)

6.75

Isoelectric Point (pI)

24.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	261
AccB7I	CCANNNNNTGG	1 cut(s)	308
AccII	CGCG	1 cut(s)	641
AclWI	GGATC	1 cut(s)	609
AcsI	RAATTY	1 cut(s)	426
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	343, 644
AfiI	CCNNNNNNNGG	3 cut(s)	70, 308, 598
AflIII	ACRYGT	1 cut(s)	639
AgsI	TTSAA	5 cut(s)	59, 142, 209, 348, 620
AjuI	GAANNNNNNNTTGG	2 cut(s)	278, 310
AluBI	AGCT	3 cut(s)	20, 85, 531
AluI	AGCT	3 cut(s)	20, 85, 531
AlwI	GGATC	1 cut(s)	609
AoxI	GGCC	3 cut(s)	223, 310, 471
ApeKI	GCWGC	2 cut(s)	410, 462
ApoI	RAATTY	1 cut(s)	426
Asp700I	GAANNNNTTC	2 cut(s)	213, 290
AspS9I	GGNCC	1 cut(s)	170
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	1 cut(s)	376
AsuNHI	GCTAGC	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	422, 474
BccI	CCATC	4 cut(s)	179, 215, 377, 490
BcnI	CCSGG	1 cut(s)	576
BfaI	CTAG	1 cut(s)	86
BisI	GCNGC	2 cut(s)	411, 463
BlsI	GCNGC	2 cut(s)	412, 464
BmcAI	AGTACT	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	576
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BmiI	GGNNCC	3 cut(s)	7, 172, 300
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	4 cut(s)	235, 257, 381, 474
BmtI	GCTAGC	1 cut(s)	89
BpuEI	CTTGAG	2 cut(s)	65, 311
BpuMI	CCSGG	1 cut(s)	576
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	3 cut(s)	201, 361, 591
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 308, 598
Bse1I	ACTGG	1 cut(s)	431
Bse3DI	GCAATG	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	3 cut(s)	70, 308, 598
BseMI	GCAATG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	431
BseRI	GAGGAG	2 cut(s)	86, 305
BseXI	GCAGC	2 cut(s)	422, 474
Bsh1236I	CGCG	1 cut(s)	641
BshFI	GGCC	3 cut(s)	225, 312, 473
BsiSI	CCGG	4 cut(s)	202, 362, 575, 592
BsiWI	CGTACG	1 cut(s)	642
BslI	CCNNNNNNNGG	3 cut(s)	70, 308, 598
BsmI	GAATGC	2 cut(s)	397, 460
BsnI	GGCC	3 cut(s)	225, 312, 473
Bsp143I	GATC	1 cut(s)	601
BspANI	GGCC	3 cut(s)	225, 312, 473
BspFNI	CGCG	1 cut(s)	641
BspLI	GGNNCC	3 cut(s)	7, 172, 300
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	609
BsrDI	GCAATG	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	431
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	601
BssNI	GRCGYC	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	446
BstACI	GRCGYC	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	87, 460
BstDEI	CTNAG	1 cut(s)	651
BstFNI	CGCG	1 cut(s)	641
BstKTI	GATC	1 cut(s)	604
BstMBI	GATC	1 cut(s)	601
BstSCI	CCNGG	1 cut(s)	574
BstUI	CGCG	1 cut(s)	641
BstV1I	GCAGC	2 cut(s)	422, 474
BstX2I	RGATCY	1 cut(s)	601
BstXI	CCANNNNNNTGG	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	601
BsuRI	GGCC	3 cut(s)	225, 312, 473
BtgZI	GCGATG	1 cut(s)	234
Cac8I	GCNNGC	2 cut(s)	87, 460
Cfr13I	GGNCC	1 cut(s)	170
CseI	GACGC	1 cut(s)	647
Csp6I	GTAC	2 cut(s)	342, 643
CviAII	CATG	3 cut(s)	32, 308, 469
CviJI	RGCY	9 cut(s)	20, 28, 63, 85, 225, 299, 312, 473, 531
CviKI_1	RGCY	9 cut(s)	20, 28, 63, 85, 225, 299, 312, 473, 531
CviQI	GTAC	2 cut(s)	342, 643
DdeI	CTNAG	1 cut(s)	651
DpnI	GATC	1 cut(s)	603
DpnII	GATC	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	589
EcoT22I	ATGCAT	1 cut(s)	250
FaeI	CATG	3 cut(s)	35, 311, 472
FatI	CATG	3 cut(s)	31, 307, 468
Fnu4HI	GCNGC	2 cut(s)	411, 463
Fsp4HI	GCNGC	2 cut(s)	411, 463
FspBI	CTAG	1 cut(s)	86
GluI	GCNGC	2 cut(s)	411, 463
HaeIII	GGCC	3 cut(s)	225, 312, 473
HapII	CCGG	4 cut(s)	202, 362, 575, 592
HgaI	GACGC	1 cut(s)	647
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	3 cut(s)	35, 311, 472
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	4 cut(s)	275, 367, 507, 571
HpaII	CCGG	4 cut(s)	202, 362, 575, 592
HphI	GGTGA	1 cut(s)	376
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	5 cut(s)	10, 170, 231, 238, 382
Hpy188III	TCNNGA	1 cut(s)	218
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	2 cut(s)	236, 577
HpyCH4IV	ACGT	1 cut(s)	258
HpyCH4V	TGCA	3 cut(s)	248, 458, 479
HpyF3I	CTNAG	1 cut(s)	651
HpySE526I	ACGT	1 cut(s)	258
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	35, 311, 472
Kzo9I	GATC	1 cut(s)	601
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	207, 215, 231, 375, 444, 588, 605
Lsp1109I	GCAGC	2 cut(s)	422, 474
LweI	GCATC	4 cut(s)	235, 257, 381, 474
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	1 cut(s)	258
MaeIII	GTNAC	4 cut(s)	43, 364, 433, 622
MalI	GATC	1 cut(s)	603
MboI	GATC	1 cut(s)	601
MboII	GAAGA	2 cut(s)	254, 433
MflI	RGATCY	1 cut(s)	601
MluCI	AATT	1 cut(s)	426
MluI	ACGCGT	1 cut(s)	639
MlyI	GAGTC	3 cut(s)	284, 361, 501
MmeI	TCCRAC	2 cut(s)	33, 368
MnlI	CCTC	8 cut(s)	39, 101, 107, 191, 276, 323, 326, 369
Mph1103I	ATGCAT	1 cut(s)	250
MroXI	GAANNNNTTC	2 cut(s)	213, 290
MseI	TTAA	2 cut(s)	159, 596
MslI	CAYNNNNRTG	1 cut(s)	494
MspI	CCGG	4 cut(s)	202, 362, 575, 592
MspR9I	CCNGG	1 cut(s)	576
Mva1269I	GAATGC	2 cut(s)	397, 460
MvnI	CGCG	1 cut(s)	641
NciI	CCSGG	1 cut(s)	576
NdeII	GATC	1 cut(s)	601
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	3 cut(s)	35, 311, 472
NlaIV	GGNNCC	3 cut(s)	7, 172, 300
NmuCI	GTSAC	3 cut(s)	364, 433, 622
NsiI	ATGCAT	1 cut(s)	250
PctI	GAATGC	2 cut(s)	397, 460
PdmI	GAANNNNTTC	2 cut(s)	213, 290
PfeI	GAWTC	1 cut(s)	571
Pfl23II	CGTACG	1 cut(s)	642
PflFI	GACNNNGTC	1 cut(s)	557
PflMI	CCANNNNNTGG	1 cut(s)	308
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	2 cut(s)	412, 464
PleI	GAGTC	3 cut(s)	283, 361, 501
PpsI	GAGTC	3 cut(s)	283, 361, 501
PspLI	CGTACG	1 cut(s)	642
PspN4I	GGNNCC	3 cut(s)	7, 172, 300
PspPI	GGNCC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	601
PsyI	GACNNNGTC	1 cut(s)	557
RsaI	GTAC	2 cut(s)	343, 644
RsaNI	GTAC	2 cut(s)	342, 643
RseI	CAYNNNNRTG	1 cut(s)	494
SaqAI	TTAA	2 cut(s)	159, 596
SatI	GCNGC	2 cut(s)	411, 463
Sau3AI	GATC	1 cut(s)	601
Sau96I	GGNCC	1 cut(s)	170
ScaI	AGTACT	1 cut(s)	343
SchI	GAGTC	3 cut(s)	284, 361, 501
ScrFI	CCNGG	1 cut(s)	576
SetI	ASST	8 cut(s)	22, 87, 112, 125, 155, 261, 533, 561
SfaNI	GCATC	4 cut(s)	235, 257, 381, 474
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	80, 326
SmoI	CTYRAG	2 cut(s)	80, 326
Sse9I	AATT	1 cut(s)	426
SspMI	CTAG	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	574
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	1 cut(s)	183
TasI	AATT	1 cut(s)	426
TatI	WGTACW	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	571
Tru1I	TTAA	2 cut(s)	159, 596
Tru9I	TTAA	2 cut(s)	159, 596
TseFI	GTSAC	3 cut(s)	364, 433, 622
TseI	GCWGC	2 cut(s)	410, 462
Tsp45I	GTSAC	3 cut(s)	364, 433, 622
TspDTI	ATGAA	4 cut(s)	255, 296, 467, 596
Tth111I	GACNNNGTC	1 cut(s)	557
Van91I	CCANNNNNTGG	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	1 cut(s)	426
XmnI	GAANNNNTTC	2 cut(s)	213, 290
XspI	CTAG	1 cut(s)	86
ZraI	GACGTC	1 cut(s)	259
ZrmI	AGTACT	1 cut(s)	343
Zsp2I	ATGCAT	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.