Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

11153903 .. 11154190

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1142900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGATCCCACAGCAGTAGCGACTAAGCCTCATGCTGTTTGCATTCCGGCTCCAGCTCAAGGCCATATCAAGGCAATGCTTAAATTTTCAAAGCTCCTCCACCATAGAGGTTTTCAGATTACCTTTGTCAACACTGAGTACAACCACAAGCGCTTTCTAAAATCTCTGGGCCCCAATTCCCTTGATGGCTCACCTGATTTCCAGTTTGCAGCCATCCCAGCCGGCCTTCCACATTCAGATGAAGATGCCACCCAAGATGTCCCATTGCCTTGTGATTCAAATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

96

Amino Acids

10.33

Weight (kDa)

6.56

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	83
AfaI	GTAC	1 cut(s)	140
AfeI	AGCGCT	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	59, 70
AgsI	TTSAA	2 cut(s)	90, 279
AluBI	AGCT	2 cut(s)	56, 94
AluI	AGCT	2 cut(s)	56, 94
AlwI	GGATC	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	152
AoxI	GGCC	3 cut(s)	61, 169, 223
ApaI	GGGCCC	1 cut(s)	173
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	169, 170
AsuHPI	GGTGA	1 cut(s)	183
BaeGI	GKGCMC	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	221
BccI	CCATC	2 cut(s)	179, 221
BfoI	RGCGCY	1 cut(s)	154
BisI	GCNGC	1 cut(s)	210
BlsI	GCNGC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	169, 170
BmiI	GGNNCC	4 cut(s)	6, 51, 171, 172
BmsI	GCATC	1 cut(s)	235
BpmI	CTGGAG	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 70
Bse118I	RCCGGY	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	2 cut(s)	81, 263
BseGI	GGATG	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	59, 70
BseMI	GCAATG	2 cut(s)	81, 263
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	217
BshFI	GGCC	3 cut(s)	63, 171, 225
BsiSI	CCGG	2 cut(s)	47, 222
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	59, 70
BsmFI	GGGAC	1 cut(s)	245
BsmI	GAATGC	1 cut(s)	42
BsnI	GGCC	3 cut(s)	63, 171, 225
Bsp120I	GGGCCC	1 cut(s)	169
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	1 cut(s)	4
BspANI	GGCC	3 cut(s)	63, 171, 225
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	4 cut(s)	6, 51, 171, 172
BspPI	GGATC	1 cut(s)	12
BsrDI	GCAATG	2 cut(s)	81, 263
BsrFI	RCCGGY	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	221
BssMI	GATC	1 cut(s)	4
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	24, 135
BstF5I	GGATG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	63, 171, 225
BtsCI	GGATG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	223
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	169, 170
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	1 cut(s)	32
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	2 cut(s)	24, 135
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco24I	GRGCYC	1 cut(s)	173
Eco47III	AGCGCT	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	1 cut(s)	35
FaiI	YATR	3 cut(s)	33, 66, 105
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	200
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	210
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	210
GsaI	CCCAGC	1 cut(s)	221
GsuI	CTGGAG	1 cut(s)	36
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	3 cut(s)	63, 171, 225
HapII	CCGG	2 cut(s)	47, 222
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	2 cut(s)	47, 222
HphI	GGTGA	1 cut(s)	183
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	2 cut(s)	117, 238
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	42, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
HpyF3I	CTNAG	2 cut(s)	24, 135
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	221
KroNI	GCCGGC	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	2 cut(s)	55, 99
LpnPI	CCDG	7 cut(s)	60, 66, 152, 207, 215, 231, 235
Lsp1109I	GCAGC	1 cut(s)	221
LweI	GCATC	1 cut(s)	235
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	173
MluCI	AATT	2 cut(s)	83, 175
MnlI	CCTC	3 cut(s)	39, 101, 107
MroNI	GCCGGC	1 cut(s)	221
MseI	TTAA	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	2 cut(s)	47, 222
Mva1269I	GAATGC	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	218
NaeI	GCCGGC	1 cut(s)	223
NdeII	GATC	1 cut(s)	4
NgoMIV	GCCGGC	1 cut(s)	221
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	4 cut(s)	6, 51, 171, 172
PctI	GAATGC	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	217
PspN4I	GGNNCC	4 cut(s)	6, 51, 171, 172
PspOMI	GGGCCC	1 cut(s)	169
PspPI	GGNCC	2 cut(s)	169, 170
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	1 cut(s)	4
Sau96I	GGNCC	2 cut(s)	169, 170
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	5 cut(s)	58, 96, 112, 125, 196
SfaNI	GCATC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	57
SmoI	CTYRAG	1 cut(s)	57
Sse9I	AATT	2 cut(s)	83, 175
SspI	AATATT	1 cut(s)	283
TasI	AATT	2 cut(s)	83, 175
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.