Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

26021298 .. 26022255

Gene Structure 958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG252100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGTTGAAACTGAAACCAAAACACAACCTCATGTGGTTTGTGTTCCATACCCATCACAAGGCCATATTAGCCCTATGATGCAATTAGCCAAGCTCCTAAACTCAAGAGGCTTCCACATAACCTTTGTCAACACTGAGTTTAATCACAAGCGCTTAATCAGGTCCAGAGGGCACACATCATCCCTTTGCCGCCTGCCGGATTTTCGGTTCGAAACCATACCAGATGGACTGCCACCATGTGACAAAGATGCAACCCAAGATGTTCCAGCACTGAGTGAATCCACCAGAACAAACTGTCTTGGTCCATTCAAAGAGCTACTAATCAAGCTTAACAAGTTGTCCGAAGTGCCCCCGGTTAGTTGCGTAATCTCAGATGGGGTTATGGGTTTTGGGAGGGAAGCTGCTGTGGAATTGGGTATTCCAGAGGTTCAGTTTTGGACTGCCTCTGCTTGTGGCTTCATGGGTTACTTGCAGTATGGTGAACTCCTGAAAAGAGGAATGGCTCTATTCAAAGATAAAGAATATAACAGCGATGATCCGGTACTCAACACACCAATTGATTTCCCAGGAGTGAAAAATGCTACTCTCAAAGACATCCCTTACCATCCTAATGAAATAATGTTCGATTTCATGGGATCAGAAGCACAGAACTGCTTGAAATCTTCTGCAATTATCTTCAACACCTACGACGAATTGAACATGAAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

236

Amino Acids

26.4

Weight (kDa)

5.7

Isoelectric Point (pI)

40.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	12 - 139	2.2e-09	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	190
AclWI	GGATC	2 cut(s)	530, 643
AdeI	CACNNNGTG	2 cut(s)	239, 275
AfaI	GTAC	1 cut(s)	543
AfeI	AGCGCT	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	59, 196
AgsI	TTSAA	6 cut(s)	8, 310, 511, 658, 679, 697
AjnI	CCWGG	1 cut(s)	565
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	4 cut(s)	94, 316, 328, 401
AluI	AGCT	4 cut(s)	94, 316, 328, 401
AlwI	GGATC	2 cut(s)	530, 643
Aor51HI	AGCGCT	1 cut(s)	152
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	162, 302
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	491
AsuII	TTCGAA	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	162, 302
BaeGI	GKGCMC	2 cut(s)	174, 351
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	4 cut(s)	61, 218, 368, 612
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	1 cut(s)	353
BfaI	CTAG	1 cut(s)	709
BfoI	RGCGCY	1 cut(s)	154
BisI	GCNGC	2 cut(s)	190, 402
BlsI	GCNGC	2 cut(s)	191, 403
Bme1390I	CCNGG	2 cut(s)	353, 567
Bme18I	GGWCC	2 cut(s)	162, 302
BmgT120I	GGNCC	2 cut(s)	162, 302
BmrFI	CCNGG	2 cut(s)	353, 567
BmsI	GCATC	2 cut(s)	69, 238
Bpu14I	TTCGAA	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	351, 565
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 196
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	351, 565
BseGI	GGATG	3 cut(s)	179, 594, 604
BseLI	CCNNNNNNNGG	2 cut(s)	59, 196
BseMII	CTCAG	3 cut(s)	126, 263, 384
BseSI	GKGCMC	2 cut(s)	174, 351
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	3 cut(s)	197, 353, 539
BslI	CCNNNNNNNGG	2 cut(s)	59, 196
BsnI	GGCC	1 cut(s)	63
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	174, 351
Bsp143I	GATC	2 cut(s)	535, 635
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	3 cut(s)	127, 264, 383
BspPI	GGATC	2 cut(s)	530, 643
BspT104I	TTCGAA	1 cut(s)	210
BssECI	CCNNGG	2 cut(s)	351, 565
BssMI	GATC	2 cut(s)	535, 635
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	135, 272, 370
BstF5I	GGATG	3 cut(s)	179, 594, 604
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	2 cut(s)	538, 638
BstMBI	GATC	2 cut(s)	535, 635
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	2 cut(s)	351, 565
BstSLI	GKGCMC	2 cut(s)	174, 351
BstV1I	GCAGC	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	63
BtgZI	GCGATG	1 cut(s)	546
BtsCI	GGATG	3 cut(s)	179, 594, 604
BtsIMutI	CAGTG	2 cut(s)	132, 269
Cac8I	GCNNGC	1 cut(s)	194
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	2 cut(s)	162, 302
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	5 cut(s)	32, 237, 460, 631, 700
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	3 cut(s)	135, 272, 370
DpnI	GATC	2 cut(s)	537, 637
DpnII	GATC	2 cut(s)	535, 635
DraIII	CACNNNGTG	2 cut(s)	239, 275
Eco47I	GGWCC	2 cut(s)	162, 302
Eco47III	AGCGCT	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	565
FaeI	CATG	5 cut(s)	35, 240, 463, 634, 703
FatI	CATG	5 cut(s)	31, 236, 459, 630, 699
Fnu4HI	GCNGC	2 cut(s)	190, 402
FokI	GGATG	3 cut(s)	166, 581, 591
Fsp4HI	GCNGC	2 cut(s)	190, 402
FspBI	CTAG	1 cut(s)	709
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	2 cut(s)	190, 402
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	3 cut(s)	197, 353, 539
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	35, 240, 463, 634, 703
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	3 cut(s)	197, 353, 539
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	130, 482
Hpy188I	TCNGA	3 cut(s)	343, 373, 640
Hpy188III	TCNNGA	4 cut(s)	105, 165, 422, 487
Hpy8I	GTNNAC	2 cut(s)	130, 482
Hpy99I	CGWCG	1 cut(s)	692
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	4 cut(s)	82, 251, 472, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	3 cut(s)	135, 272, 370
Hsp92II	CATG	5 cut(s)	35, 240, 463, 634, 703
HspAI	GCGC	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	535, 635
LmnI	GCTCC	1 cut(s)	99
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	2 cut(s)	69, 238
MaeI	CTAG	1 cut(s)	709
MaeIII	GTNAC	2 cut(s)	239, 464
MalI	GATC	2 cut(s)	537, 637
MboI	GATC	2 cut(s)	535, 635
MboII	GAAGA	2 cut(s)	654, 667
MfeI	CAATTG	1 cut(s)	555
MhlI	GDGCHC	2 cut(s)	174, 351
MluCI	AATT	5 cut(s)	83, 410, 555, 669, 692
MnlI	CCTC	7 cut(s)	39, 101, 161, 387, 418, 454, 488
MseI	TTAA	3 cut(s)	141, 155, 330
MslI	CAYNNNNRTG	1 cut(s)	609
MspI	CCGG	3 cut(s)	197, 353, 539
MspR9I	CCNGG	2 cut(s)	353, 567
MunI	CAATTG	1 cut(s)	555
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	2 cut(s)	535, 635
NlaIII	CATG	5 cut(s)	35, 240, 463, 634, 703
NmuCI	GTSAC	1 cut(s)	239
NspV	TTCGAA	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	191, 403
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspPI	GGNCC	2 cut(s)	162, 302
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	141, 155, 330
SatI	GCNGC	2 cut(s)	190, 402
Sau3AI	GATC	2 cut(s)	535, 635
Sau96I	GGNCC	2 cut(s)	162, 302
ScrFI	CCNGG	2 cut(s)	353, 567
SduI	GDGCHC	2 cut(s)	174, 351
SetI	ASST	9 cut(s)	31, 96, 125, 164, 318, 330, 403, 429, 686
SfaNI	GCATC	2 cut(s)	69, 238
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	2 cut(s)	162, 302
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	5 cut(s)	83, 410, 555, 669, 692
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	709
StyD4I	CCNGG	2 cut(s)	351, 565
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	2 cut(s)	210, 624
TasI	AATT	5 cut(s)	83, 410, 555, 669, 692
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	3 cut(s)	141, 155, 330
Tru9I	TTAA	3 cut(s)	141, 155, 330
TscAI	CASTG	2 cut(s)	139, 276
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	3 cut(s)	448, 619, 627
TspRI	CASTG	2 cut(s)	139, 276
VpaK11BI	GGWCC	2 cut(s)	162, 302
XspI	CTAG	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.