Rroxscaffold_1G00050790

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000975
Physical Location & Seq
Reverse (-)
71290318 .. 71292792
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00050790.1

Sequence Viewer

Length: 420 bp
ATGGCTTCCGCTTATCATCATAAGCCTCATGCCGCTATGCTTAAATTAACCAAAATCCTCCACCACAGAGGCTTTCACATTACCTTTGCCAACACAGAATTCAACCACAAGCGATTTCTTAAGTCTCGAGGACCCAACTCCCTCGATGGCTTACCTGATTTTTACTTTGAAGCCATCCCTGATGGCATTCCAGAATCAGGTGAAGATGCCACCCAAGAAAGCACTTTGATTTCTGACTTCGTCAGAAATCATCTCTTGGCTCCATTTCGTGACCTCTTGATAACACTCAACAGTACTAGTCCTCCAGTGACTTGCATTGTTTCAGATGGTTTCATGTCCAATTTTACCACCACAGCGGCAGAAGAACTTGGAATCCCTATTGCATTGTTCTACACTATTTCTGCTTGCAGCTTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

139

Amino Acids

15.43

Weight (kDa)

6.02

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 9, 33, 356
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 1 cut(s) 197
AflII CTTAAG 1 cut(s) 119
AgsI TTSAA 2 cut(s) 103, 170
AhlI ACTAGT 1 cut(s) 296
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AloI GAACNNNNNNTCC 2 cut(s) 357, 389
AluBI AGCT 1 cut(s) 411
AluI AGCT 1 cut(s) 411
Alw26I GTCTC 1 cut(s) 129
Ama87I CYCGRG 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 408
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 1 cut(s) 131
BccI CCATC 4 cut(s) 140, 176, 182, 320
BcoDI GTCTC 1 cut(s) 129
BcuI ACTAGT 1 cut(s) 296
BfaI CTAG 1 cut(s) 297
BfrI CTTAAG 1 cut(s) 119
BisI GCNGC 3 cut(s) 33, 357, 409
BlsI GCNGC 3 cut(s) 34, 358, 410
BmcAI AGTACT 1 cut(s) 295
Bme18I GGWCC 1 cut(s) 131
BmeT110I CYCGRG 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 133, 261
BmsI GCATC 1 cut(s) 196
BpmI CTGGAG 1 cut(s) 288
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 305
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 197
BseNI ACTGG 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 129
BsmI GAATGC 1 cut(s) 186
BsoBI CYCGRG 1 cut(s) 126
BspACI CCGC 3 cut(s) 9, 33, 356
BspLI GGNNCC 2 cut(s) 133, 261
BspTI CTTAAG 1 cut(s) 119
BsrI ACTGG 1 cut(s) 305
Bst4CI ACNGT 1 cut(s) 293
BstAFI CTTAAG 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 406
BstF5I GGATG 1 cut(s) 174
BstMAI GTCTC 1 cut(s) 129
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 312
Cac8I GCNNGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 131
Csp6I GTAC 1 cut(s) 294
CviAII CATG 2 cut(s) 29, 334
CviJI RGCY 7 cut(s) 5, 25, 72, 150, 173, 260, 411
CviKI_1 RGCY 7 cut(s) 5, 25, 72, 150, 173, 260, 411
CviQI GTAC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 126
EcoO109I RGGNCCY 1 cut(s) 131
EcoRI GAATTC 1 cut(s) 98
FaeI CATG 2 cut(s) 32, 337
FaiI YATR 6 cut(s) 21, 30, 38, 335, 416, 418
FatI CATG 2 cut(s) 28, 333
Fnu4HI GCNGC 3 cut(s) 33, 357, 409
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 3 cut(s) 33, 357, 409
FspBI CTAG 1 cut(s) 297
GluI GCNGC 3 cut(s) 33, 357, 409
GsuI CTGGAG 1 cut(s) 288
Hin1II CATG 2 cut(s) 32, 337
HinfI GANTC 2 cut(s) 194, 372
HphI GGTGA 1 cut(s) 212
Hpy188I TCNGA 3 cut(s) 235, 245, 325
Hpy188III TCNNGA 4 cut(s) 126, 191, 269, 277
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4V TGCA 3 cut(s) 315, 383, 408
Hsp92II CATG 2 cut(s) 32, 337
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 5 cut(s) 168, 183, 192, 204, 318
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 269, 307
MboII GAAGA 2 cut(s) 215, 374
MluCI AATT 3 cut(s) 44, 98, 340
MnlI CCTC 7 cut(s) 36, 62, 68, 122, 152, 284, 312
MseI TTAA 3 cut(s) 42, 47, 120
MspA1I CMGCKG 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 186
NlaIII CATG 2 cut(s) 32, 337
NlaIV GGNNCC 2 cut(s) 133, 261
NmuCI GTSAC 2 cut(s) 269, 307
PaeR7I CTCGAG 1 cut(s) 126
PctI GAATGC 1 cut(s) 186
PfeI GAWTC 2 cut(s) 194, 372
PflFI GACNNNGTC 1 cut(s) 239
PkrI GCNGC 3 cut(s) 34, 358, 410
PpuMI RGGWCCY 1 cut(s) 131
Psp5II RGGWCCY 1 cut(s) 131
PspN4I GGNNCC 2 cut(s) 133, 261
PspPI GGNCC 1 cut(s) 131
PspPPI RGGWCCY 1 cut(s) 131
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SaqAI TTAA 3 cut(s) 42, 47, 120
SatI GCNGC 3 cut(s) 33, 357, 409
Sau96I GGNCC 1 cut(s) 131
ScaI AGTACT 1 cut(s) 295
SetI ASST 5 cut(s) 86, 157, 202, 276, 413
SfaNI GCATC 1 cut(s) 196
Sfr274I CTCGAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 131
SlaI CTCGAG 1 cut(s) 126
SmlI CTYRAG 2 cut(s) 119, 126
SmoI CTYRAG 2 cut(s) 119, 126
SpeI ACTAGT 1 cut(s) 296
Sse9I AATT 3 cut(s) 44, 98, 340
SsiI CCGC 3 cut(s) 9, 33, 356
SspMI CTAG 1 cut(s) 297
TaaI ACNGT 1 cut(s) 293
TaqI TCGA 2 cut(s) 127, 144
TasI AATT 3 cut(s) 44, 98, 340
TatI WGTACW 1 cut(s) 293
TauI GCSGC 2 cut(s) 35, 359
TfiI GAWTC 2 cut(s) 194, 372
Tru1I TTAA 3 cut(s) 42, 47, 120
Tru9I TTAA 3 cut(s) 42, 47, 120
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 2 cut(s) 269, 307
TseI GCWGC 1 cut(s) 408
Tsp45I GTSAC 2 cut(s) 269, 307
TspDTI ATGAA 2 cut(s) 322, 403
TspRI CASTG 1 cut(s) 312
Tth111I GACNNNGTC 1 cut(s) 239
Vha464I CTTAAG 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 131
XapI RAATTY 1 cut(s) 98
XhoI CTCGAG 1 cut(s) 126
XspI CTAG 1 cut(s) 297
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.