Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

66361584 .. 66362252

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG493900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGATTGCATTGCCTTAACGTCGCAGAAGCCACATGCAGTCTGCATCCCATTCCCAGCTCAAGGCCACATAAACCCAATGCTAAAATTGGCTAAACTCCTCCACTTCAAAGGTTTTCATATAACCTTTGTCAACACAGAGTTCATACATAAACGCCTGCTGAAATCTCGAGGTCCGAATTCTCTTGATGGTTTCCCTTCCTTTAGATTCGAGACAATTCCAGATGGTCTTCCTCCAACTGATGCGAATGTTGCCACCCAACACATGCCATCGCTATGCGAATCCACAAGGAAAAACTGCCTAGCACCCTTCAGAGACCTTCTTTTGAAGCTCAATTCTTCACCAAATTCGCCTCCAGTAACCTGCATAGTTGCTGATGGTATCATGAACTTCACTCTTGATGCAGCCCAAGAACTAGGCCTTCCTGAAGTTATTTTCTGGACAACAAGTGCCTGTGGTTTCATGGGCTACCTTCAATATCGCAATCTCATTGAAAAGGGTTTAGTTCCTCTTAAAGGTATTGAACTATTGAACACTAATTATACAAAGAGAGGATATCACTACTTGGTGAAATCTCTTTTGGTTTTACGAAAAAAAAAAGTGGATATTATGCAGCTAGTGACATATTATAGATTTCACACAGATTTGCAAATGACTTTAAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

222

Amino Acids

25.09

Weight (kDa)

9.23

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	14 - 140	2.2e-09	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	371
AcsI	RAATTY	2 cut(s)	178, 346
AcuI	CTGAAG	2 cut(s)	295, 447
AfiI	CCNNNNNNNGG	2 cut(s)	62, 515
AgsI	TTSAA	6 cut(s)	109, 328, 476, 494, 524, 532
AjuI	GAANNNNNNNTTGG	2 cut(s)	563, 595
AluBI	AGCT	3 cut(s)	59, 331, 616
AluI	AGCT	3 cut(s)	59, 331, 616
Alw26I	GTCTC	2 cut(s)	206, 309
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	2 cut(s)	64, 418
ApeKI	GCWGC	2 cut(s)	404, 613
ApoI	RAATTY	2 cut(s)	178, 346
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	333, 580
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	1 cut(s)	173
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	416, 625
BccI	CCATC	4 cut(s)	182, 218, 277, 371
BcoDI	GTCTC	2 cut(s)	206, 309
BfaI	CTAG	3 cut(s)	302, 416, 617
BfuAI	ACCTGC	1 cut(s)	371
BisI	GCNGC	2 cut(s)	405, 614
BlsI	GCNGC	2 cut(s)	406, 615
Bme18I	GGWCC	1 cut(s)	173
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	173
BmsI	GCATC	3 cut(s)	54, 232, 391
BpiI	GAAGAC	1 cut(s)	221
BpmI	CTGGAG	1 cut(s)	339
BpuEI	CTTGAG	1 cut(s)	45
BsaI	GGTCTC	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 515
Bse1I	ACTGG	1 cut(s)	356
Bse3DI	GCAATG	1 cut(s)	9
BseGI	GGATG	1 cut(s)	45
BseLI	CCNNNNNNNGG	2 cut(s)	62, 515
BseMI	GCAATG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	2 cut(s)	416, 625
BseYI	CCCAGC	1 cut(s)	55
BshFI	GGCC	2 cut(s)	66, 420
BsiHKCI	CYCGRG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	62, 515
BsmAI	GTCTC	2 cut(s)	206, 309
BsnI	GGCC	2 cut(s)	66, 420
Bso31I	GGTCTC	1 cut(s)	309
BsoBI	CYCGRG	1 cut(s)	168
BspANI	GGCC	2 cut(s)	66, 420
BspHI	TCATGA	1 cut(s)	384
BspMI	ACCTGC	1 cut(s)	371
BspTNI	GGTCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	158
BstENI	CCTNNNNNAGG	1 cut(s)	513
BstF5I	GGATG	1 cut(s)	45
BstMAI	GTCTC	2 cut(s)	206, 309
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNSI	RCATGY	2 cut(s)	38, 268
BstV1I	GCAGC	2 cut(s)	416, 625
BstV2I	GAAGAC	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	66, 420
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	1 cut(s)	158
CciI	TCATGA	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	173
CviAII	CATG	4 cut(s)	35, 265, 385, 463
CviJI	RGCY	9 cut(s)	31, 59, 66, 92, 331, 407, 420, 468, 616
CviKI_1	RGCY	9 cut(s)	31, 59, 66, 92, 331, 407, 420, 468, 616
DraI	TTTAAA	1 cut(s)	660
Eco147I	AGGCCT	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	2 cut(s)	295, 447
Eco88I	CYCGRG	1 cut(s)	168
EcoNI	CCTNNNNNAGG	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	178
EcoRV	GATATC	1 cut(s)	557
FaeI	CATG	4 cut(s)	38, 268, 388, 466
FatI	CATG	4 cut(s)	34, 264, 384, 462
Fnu4HI	GCNGC	2 cut(s)	405, 614
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	2 cut(s)	405, 614
FspBI	CTAG	3 cut(s)	302, 416, 617
GluI	GCNGC	2 cut(s)	405, 614
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	2 cut(s)	66, 420
Hin1II	CATG	4 cut(s)	38, 268, 388, 466
HincII	GTYRAC	1 cut(s)	133
HindII	GTYRAC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	207, 281
HphI	GGTGA	2 cut(s)	333, 580
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	177, 314, 668
Hpy188III	TCNNGA	8 cut(s)	168, 185, 211, 221, 385, 398, 425, 439
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	5 cut(s)	207, 319, 329, 431, 482
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	7 cut(s)	9, 38, 45, 366, 404, 613, 649
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	38, 268, 388, 466
LpnPI	CCDG	8 cut(s)	69, 170, 234, 369, 376, 424, 438, 466
Lsp1109I	GCAGC	2 cut(s)	416, 625
LweI	GCATC	3 cut(s)	54, 232, 391
MaeI	CTAG	3 cut(s)	302, 416, 617
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	358, 619
MboII	GAAGA	2 cut(s)	221, 330
MluCI	AATT	6 cut(s)	86, 178, 216, 334, 346, 538
MmeI	TCCRAC	1 cut(s)	260
MnlI	CCTC	6 cut(s)	110, 164, 243, 363, 519, 545
MseI	TTAA	3 cut(s)	17, 513, 659
MslI	CAYNNNNRTG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	251
NlaIII	CATG	4 cut(s)	38, 268, 388, 466
NmuCI	GTSAC	1 cut(s)	619
NspI	RCATGY	2 cut(s)	38, 268
PaeR7I	CTCGAG	1 cut(s)	168
PagI	TCATGA	1 cut(s)	384
PceI	AGGCCT	1 cut(s)	420
PfeI	GAWTC	2 cut(s)	207, 281
PkrI	GCNGC	2 cut(s)	406, 615
PspFI	CCCAGC	1 cut(s)	55
PspPI	GGNCC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	274
SaqAI	TTAA	3 cut(s)	17, 513, 659
SatI	GCNGC	2 cut(s)	405, 614
Sau96I	GGNCC	1 cut(s)	173
SfaNI	GCATC	3 cut(s)	54, 232, 391
Sfr274I	CTCGAG	1 cut(s)	168
SinI	GGWCC	1 cut(s)	173
SlaI	CTCGAG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	274
SmlI	CTYRAG	2 cut(s)	60, 168
SmoI	CTYRAG	2 cut(s)	60, 168
Sse9I	AATT	6 cut(s)	86, 178, 216, 334, 346, 538
SseBI	AGGCCT	1 cut(s)	420
SspMI	CTAG	3 cut(s)	302, 416, 617
StuI	AGGCCT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	2 cut(s)	169, 210
TasI	AATT	6 cut(s)	86, 178, 216, 334, 346, 538
TfiI	GAWTC	2 cut(s)	207, 281
Tru1I	TTAA	3 cut(s)	17, 513, 659
Tru9I	TTAA	3 cut(s)	17, 513, 659
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	2 cut(s)	404, 613
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	4 cut(s)	107, 133, 401, 451
VpaK11BI	GGWCC	1 cut(s)	173
XagI	CCTNNNNNAGG	1 cut(s)	513
XapI	RAATTY	2 cut(s)	178, 346
XceI	RCATGY	2 cut(s)	38, 268
XhoI	CTCGAG	1 cut(s)	168
XspI	CTAG	3 cut(s)	302, 416, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.