Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031215.1

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

196 .. 705

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031215.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgtcttccaataagcctcatgctgtttgtattccatgtcctgctcaaagccatataaaggctgtgcttaaattggcaaaactcctacaccacagaggtttttatgtaacctttgtcaacacagagttcaatcacaagcgcttccttaagtctctaggacccaactccttagatggcttccctgattttcagtttgaaaccattccagatggccttccagattcaaatgaagatgccacccaagacattgctttactctgtgactgtgcccgaaaaaatttcttggctcctttccgtgatctcctcatgaaacttaacaacactcagactcaacctccagtgacttgcattgtttcagatggtttcatgtcagtgttcaccatcacagcagctgaagaaattggagtccccatagcactcttctatactatttctgcttccgccttcatgggatgcaaacaatttcgcactttggtccaaaaagggcttgcaccattcaaaggtgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

169

Amino Acids

18.68

Weight (kDa)

7.63

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	441
AcsI	RAATTY	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	414
AfeI	AGCGCT	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	58, 500
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	130, 197, 225, 499
AluBI	AGCT	1 cut(s)	392
AluI	AGCT	1 cut(s)	392
Alw26I	GTCTC	1 cut(s)	156
AlwNI	CAGNNNCTG	1 cut(s)	392
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	277
Asp700I	GAANNNNTTC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	158, 475
AsuHPI	GGTGA	1 cut(s)	370
AvaII	GGWCC	2 cut(s)	158, 475
BaeGI	GKGCMC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	4 cut(s)	167, 203, 353, 389
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	142
BfrI	CTTAAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme18I	GGWCC	2 cut(s)	158, 475
BmgT120I	GGNCC	2 cut(s)	158, 475
BmiI	GGNNCC	2 cut(s)	160, 288
BmsI	GCATC	2 cut(s)	223, 443
BpmI	CTGGAG	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 500
Bse1I	ACTGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	458
BseLI	CCNNNNNNNGG	2 cut(s)	58, 500
BseMI	GCAATG	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	401
BshFI	GGCC	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	58, 500
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	298
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	306
BspLI	GGNNCC	2 cut(s)	160, 288
BspTI	CTTAAG	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	338
BssMI	GATC	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	425
BstAFI	CTTAAG	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	2 cut(s)	169, 324
BstF5I	GGATG	1 cut(s)	458
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	1 cut(s)	301
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	458
BtsIMutI	CAGTG	2 cut(s)	345, 378
Cac8I	GCNNGC	1 cut(s)	489
CaiI	CAGNNNCTG	1 cut(s)	392
CciI	TCATGA	1 cut(s)	306
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	158, 475
CviAII	CATG	5 cut(s)	20, 36, 307, 367, 448
CviJI	RGCY	8 cut(s)	16, 51, 62, 177, 213, 287, 392, 487
CviKI_1	RGCY	8 cut(s)	16, 51, 62, 177, 213, 287, 392, 487
DdeI	CTNAG	2 cut(s)	169, 324
DpnI	GATC	1 cut(s)	300
DpnII	GATC	1 cut(s)	298
Eam1104I	CTCTTC	1 cut(s)	425
EarI	CTCTTC	1 cut(s)	425
EciI	GGCGGA	1 cut(s)	430
Eco47I	GGWCC	2 cut(s)	158, 475
Eco47III	AGCGCT	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	414
EcoO109I	RGGNCCY	1 cut(s)	158
FaeI	CATG	5 cut(s)	23, 39, 310, 370, 451
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	5 cut(s)	19, 35, 306, 366, 447
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	1 cut(s)	465
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	1 cut(s)	390
GsuI	CTGGAG	1 cut(s)	321
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	5 cut(s)	23, 39, 310, 370, 451
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	3 cut(s)	221, 328, 405
HphI	GGTGA	1 cut(s)	370
Hpy166II	GTNNAC	2 cut(s)	118, 378
Hpy188I	TCNGA	2 cut(s)	327, 358
Hpy188III	TCNNGA	3 cut(s)	206, 218, 307
Hpy8I	GTNNAC	2 cut(s)	118, 378
HpyAV	CCTTC	2 cut(s)	224, 454
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4V	TGCA	3 cut(s)	348, 456, 491
HpyF3I	CTNAG	2 cut(s)	169, 324
Hsp92II	CATG	5 cut(s)	23, 39, 310, 370, 451
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	298
LmnI	GCTCC	1 cut(s)	292
LpnPI	CCDG	5 cut(s)	54, 195, 219, 231, 351
Lsp1109I	GCAGC	1 cut(s)	401
LweI	GCATC	2 cut(s)	223, 443
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	3 cut(s)	106, 260, 340
MalI	GATC	1 cut(s)	300
MboI	GATC	1 cut(s)	298
MboII	GAAGA	3 cut(s)	242, 407, 412
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	4 cut(s)	71, 277, 399, 461
MlyI	GAGTC	2 cut(s)	322, 414
MnlI	CCTC	4 cut(s)	27, 89, 314, 345
MroXI	GAANNNNTTC	1 cut(s)	201
MseI	TTAA	3 cut(s)	69, 147, 315
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	392
MspCI	CTTAAG	1 cut(s)	146
NdeII	GATC	1 cut(s)	298
NlaIII	CATG	5 cut(s)	23, 39, 310, 370, 451
NlaIV	GGNNCC	2 cut(s)	160, 288
NmuCI	GTSAC	2 cut(s)	260, 340
PagI	TCATGA	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	201
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	2 cut(s)	322, 413
PpsI	GAGTC	2 cut(s)	322, 413
PpuMI	RGGWCCY	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	160, 288
PspPI	GGNCC	2 cut(s)	158, 475
PspPPI	RGGWCCY	1 cut(s)	158
PstNI	CAGNNNCTG	1 cut(s)	392
PvuII	CAGCTG	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	3 cut(s)	69, 147, 315
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	1 cut(s)	298
Sau96I	GGNCC	2 cut(s)	158, 475
SchI	GAGTC	2 cut(s)	322, 414
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	5 cut(s)	100, 113, 337, 394, 505
SfaNI	GCATC	2 cut(s)	223, 443
SinI	GGWCC	2 cut(s)	158, 475
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	4 cut(s)	71, 277, 399, 461
SsiI	CCGC	1 cut(s)	441
SspMI	CTAG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	266
TasI	AATT	4 cut(s)	71, 277, 399, 461
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	3 cut(s)	69, 147, 315
Tru9I	TTAA	3 cut(s)	69, 147, 315
TscAI	CASTG	2 cut(s)	345, 378
TseFI	GTSAC	2 cut(s)	260, 340
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	2 cut(s)	260, 340
TspDTI	ATGAA	4 cut(s)	243, 323, 355, 436
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	2 cut(s)	345, 378
Vha464I	CTTAAG	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	158, 475
XapI	RAATTY	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	201
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.