Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

69954814 .. 69955083

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21843

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGGGTTCCAATGCTTTAATGGCAGAGACTAAGCCACATGCCGTATGCATCCCTTACCCAGCTCAGGGTCACATAAACCCTATGCTCAAGTTAGCCAAGCTACTCCACCACAAGGGCTTCCACATCACCTTCGTCAACATCGAGTACAACCACAAGTGCCTCCTCAACTCCCGAGGCCCCAACGCCCTCGACGGTCTCCCTTCTTTTCAGTTCAAGACCATTCCCGATGGGCTTCCTTCTACCGACTCAAATGCCACGCAGGATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

89

Amino Acids

9.75

Weight (kDa)

7.87

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	15 - 46	2.9e-06	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	3 cut(s)	64, 65, 112
AgsI	TTSAA	1 cut(s)	214
AluBI	AGCT	2 cut(s)	62, 100
AluI	AGCT	2 cut(s)	62, 100
Alw26I	GTCTC	2 cut(s)	20, 200
Ama87I	CYCGRG	1 cut(s)	171
AoxI	GGCC	1 cut(s)	175
AspS9I	GGNCC	1 cut(s)	176
AsuHPI	GGTGA	1 cut(s)	118
AvaI	CYCGRG	1 cut(s)	171
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BcoDI	GTCTC	2 cut(s)	20, 200
BmeT110I	CYCGRG	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	7, 178
BmsI	GCATC	1 cut(s)	57
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	71
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 65, 112
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	3 cut(s)	64, 65, 112
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	171
BslI	CCNNNNNNNGG	3 cut(s)	64, 65, 112
BsmAI	GTCTC	2 cut(s)	20, 200
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	200
BsoBI	CYCGRG	1 cut(s)	171
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	7, 178
BspTNI	GGTCTC	1 cut(s)	200
BssECI	CCNNGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	30, 63
BstF5I	GGATG	1 cut(s)	48
BstMAI	GTCTC	2 cut(s)	20, 200
BstMWI	GCNNNNNNNGC	1 cut(s)	20
BstNSI	RCATGY	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	38
CviJI	RGCY	7 cut(s)	34, 62, 95, 100, 117, 177, 232
CviKI_1	RGCY	7 cut(s)	34, 62, 95, 100, 117, 177, 232
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	30, 63
Eco31I	GGTCTC	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	176
EcoT22I	ATGCAT	1 cut(s)	50
FaeI	CATG	1 cut(s)	41
FaiI	YATR	6 cut(s)	39, 46, 74, 83, 266, 268
FatI	CATG	1 cut(s)	37
FokI	GGATG	1 cut(s)	35
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	41
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	1 cut(s)	245
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188III	TCNNGA	3 cut(s)	171, 214, 224
Hpy8I	GTNNAC	1 cut(s)	136
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	3 cut(s)	139, 210, 246
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	1 cut(s)	20
HpyF3I	CTNAG	2 cut(s)	30, 63
Hsp92II	CATG	1 cut(s)	41
LpnPI	CCDG	3 cut(s)	50, 72, 245
LweI	GCATC	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	4 cut(s)	167, 170, 173, 197
Mph1103I	ATGCAT	1 cut(s)	50
MseI	TTAA	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	20
NlaIII	CATG	1 cut(s)	41
NlaIV	GGNNCC	2 cut(s)	7, 178
NmuCI	GTSAC	1 cut(s)	68
NsiI	ATGCAT	1 cut(s)	50
NspI	RCATGY	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	7, 178
PspPI	GGNCC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	17
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	239
SetI	ASST	3 cut(s)	64, 102, 131
SfaNI	GCATC	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	141, 189
TatI	WGTACW	1 cut(s)	144
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	68
Tsp45I	GTSAC	1 cut(s)	68
XceI	RCATGY	1 cut(s)	41
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
Zsp2I	ATGCAT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.