Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

67604437 .. 67604982

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00131070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGTTCGACACAGTTAGGAGCCAAAGAACTGCATGCAGTCTGTGTCCCTTTCCCAGCACAAGGCCATGTTAACCCCATGATGCAATTAGCCAAGCTTCTGCACTCCAGGGGATTCTTCATAACATTTGTCAACACTGAGTTCAACCACCGGCGTTTAATCCGATCCAGAGGTTCCGACTCTGTCAAGGGACTACCGGACTTCCAATTCGAGACCATACCGGACGGGTTGCCACCTTCAGATAAAGATGCAACTCAAGATGTCCCGGCTTTATGTGACTCCACCAGGAAAACATGTCTAGGCCCTTTTAAGAAGCTGGTGACTAAGCTCAATTCCTCATCTGAAGTGCCACAGATTACTTGTATAATTTCTGATGGTACCACGGGATTTGGGAGGGAAGTTGCTAAGGAACTAGGGATTCCTGAGGTGCAGCTTTGGACTGCTTCTGCTTGTGGCTTCATGGCTTACCTGCAATACAGCGAACTTGTTAAACGAGGCATTGTTCCATTCAAAGGTACTTCATTCTTTCTGAAACCTAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

181

Amino Acids

19.91

Weight (kDa)

8.84

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	13 - 84	1.8e-09	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	477
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	377
AclWI	GGATC	1 cut(s)	159
AcuI	CTGAAG	2 cut(s)	222, 363
AfaI	GTAC	2 cut(s)	379, 517
AfiI	CCNNNNNNNGG	2 cut(s)	62, 512
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	145, 511
AjnI	CCWGG	2 cut(s)	107, 284
AluBI	AGCT	4 cut(s)	97, 316, 328, 433
AluI	AGCT	4 cut(s)	97, 316, 328, 433
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	159
AoxI	GGCC	2 cut(s)	64, 301
ApeKI	GCWGC	1 cut(s)	430
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp718I	GGTACC	1 cut(s)	377
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	331
AxyI	CCTNAGG	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	377
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	1 cut(s)	368
BciT130I	CCWGG	2 cut(s)	109, 286
BcnI	CCSGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	299, 413
BfuAI	ACCTGC	1 cut(s)	477
BisI	GCNGC	1 cut(s)	431
BlsI	GCNGC	1 cut(s)	432
Bme1390I	CCNGG	3 cut(s)	109, 266, 286
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	3 cut(s)	22, 175, 379
BmrFI	CCNGG	3 cut(s)	109, 266, 286
BmsI	GCATC	2 cut(s)	72, 238
BpmI	CTGGAG	1 cut(s)	91
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	266
BsaI	GGTCTC	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	108, 381
BsaWI	WCCGGW	2 cut(s)	196, 220
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 512
Bse118I	RCCGGY	1 cut(s)	150
Bse21I	CCTNAGG	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	109, 286
BseDI	CCNNGG	2 cut(s)	108, 381
BseLI	CCNNNNNNNGG	2 cut(s)	62, 512
BseMII	CTCAG	2 cut(s)	129, 414
BseXI	GCAGC	1 cut(s)	442
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	2 cut(s)	86, 449
BshFI	GGCC	2 cut(s)	66, 303
BshNI	GGYRCC	1 cut(s)	377
BsiSI	CCGG	4 cut(s)	151, 197, 221, 266
BslFI	GGGAC	3 cut(s)	32, 204, 248
BslI	CCNNNNNNNGG	2 cut(s)	62, 512
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	3 cut(s)	32, 204, 248
BsnI	GGCC	2 cut(s)	66, 303
Bso31I	GGTCTC	1 cut(s)	206
Bsp143I	GATC	1 cut(s)	164
BspANI	GGCC	2 cut(s)	66, 303
BspCNI	CTCAG	2 cut(s)	130, 415
BspLI	GGNNCC	3 cut(s)	22, 175, 379
BspMI	ACCTGC	1 cut(s)	477
BspPI	GGATC	1 cut(s)	159
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	108, 381
BssMI	GATC	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	109, 286
Bst4CI	ACNGT	1 cut(s)	15
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	4 cut(s)	138, 324, 405, 423
BstDSI	CCRYGG	1 cut(s)	381
BstKTI	GATC	1 cut(s)	167
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	164
BstNI	CCWGG	2 cut(s)	109, 286
BstNSI	RCATGY	2 cut(s)	38, 297
BstSCI	CCNGG	3 cut(s)	107, 264, 284
BstV1I	GCAGC	1 cut(s)	442
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	66, 303
BtgI	CCRYGG	1 cut(s)	381
BtsIMutI	CAGTG	1 cut(s)	135
BveI	ACCTGC	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	36
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	378, 516
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	5 cut(s)	35, 68, 79, 294, 460
CviQI	GTAC	2 cut(s)	378, 516
DdeI	CTNAG	4 cut(s)	138, 324, 405, 423
DpnI	GATC	1 cut(s)	166
DpnII	GATC	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	206
Eco57I	CTGAAG	2 cut(s)	222, 363
Eco81I	CCTNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	107, 284
FaeI	CATG	5 cut(s)	38, 71, 82, 297, 463
FaiI	YATR	9 cut(s)	36, 69, 80, 122, 218, 274, 295, 365, 461
FaqI	GGGAC	3 cut(s)	32, 204, 248
FatI	CATG	5 cut(s)	34, 67, 78, 293, 459
Fnu4HI	GCNGC	1 cut(s)	431
Fsp4HI	GCNGC	1 cut(s)	431
FspBI	CTAG	2 cut(s)	299, 413
GluI	GCNGC	1 cut(s)	431
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	91
HaeIII	GGCC	2 cut(s)	66, 303
HapII	CCGG	4 cut(s)	151, 197, 221, 266
Hin1II	CATG	5 cut(s)	38, 71, 82, 297, 463
HincII	GTYRAC	2 cut(s)	73, 133
HindII	GTYRAC	2 cut(s)	73, 133
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	4 cut(s)	114, 179, 278, 418
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	4 cut(s)	151, 197, 221, 266
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	73, 133
Hpy188I	TCNGA	6 cut(s)	164, 178, 241, 343, 373, 531
Hpy188III	TCNNGA	4 cut(s)	168, 211, 257, 422
Hpy8I	GTNNAC	2 cut(s)	73, 133
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	7 cut(s)	34, 38, 85, 103, 251, 430, 472
HpyF3I	CTNAG	4 cut(s)	138, 324, 405, 423
Hsp92II	CATG	5 cut(s)	38, 71, 82, 297, 463
KpnI	GGTACC	1 cut(s)	381
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	20
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	2 cut(s)	72, 238
MaeI	CTAG	2 cut(s)	299, 413
MaeIII	GTNAC	2 cut(s)	275, 319
MalI	GATC	1 cut(s)	166
MboI	GATC	1 cut(s)	164
MboII	GAAGA	1 cut(s)	109
MluCI	AATT	5 cut(s)	86, 206, 331, 366, 538
MlyI	GAGTC	2 cut(s)	173, 272
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	5 cut(s)	164, 346, 387, 418, 488
MseI	TTAA	4 cut(s)	72, 158, 309, 489
MspI	CCGG	4 cut(s)	151, 197, 221, 266
MspR9I	CCNGG	3 cut(s)	109, 266, 286
MvaI	CCWGG	2 cut(s)	109, 286
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	164
NlaIII	CATG	5 cut(s)	38, 71, 82, 297, 463
NlaIV	GGNNCC	3 cut(s)	22, 175, 379
NmuCI	GTSAC	2 cut(s)	275, 319
NspI	RCATGY	2 cut(s)	38, 297
PaeI	GCATGC	1 cut(s)	38
PciI	ACATGT	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	114, 418
PflFI	GACNNNGTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	432
PleI	GAGTC	2 cut(s)	173, 272
PpsI	GAGTC	2 cut(s)	173, 272
PscI	ACATGT	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	107, 284
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	2 cut(s)	107, 284
PspN4I	GGNNCC	3 cut(s)	22, 175, 379
PspPI	GGNCC	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	2 cut(s)	379, 517
RsaNI	GTAC	2 cut(s)	378, 516
SaqAI	TTAA	4 cut(s)	72, 158, 309, 489
SatI	GCNGC	1 cut(s)	431
Sau3AI	GATC	1 cut(s)	164
Sau96I	GGNCC	1 cut(s)	302
SchI	GAGTC	2 cut(s)	173, 272
ScrFI	CCNGG	3 cut(s)	109, 266, 286
SfaNI	GCATC	2 cut(s)	72, 238
SgrAI	CRCCGGYG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
SphI	GCATGC	1 cut(s)	38
Sse9I	AATT	5 cut(s)	86, 206, 331, 366, 538
SspMI	CTAG	2 cut(s)	299, 413
StyD4I	CCNGG	3 cut(s)	107, 264, 284
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	2 cut(s)	8, 210
TasI	AATT	5 cut(s)	86, 206, 331, 366, 538
TfiI	GAWTC	2 cut(s)	114, 418
Tru1I	TTAA	4 cut(s)	72, 158, 309, 489
Tru9I	TTAA	4 cut(s)	72, 158, 309, 489
TscAI	CASTG	1 cut(s)	142
TseFI	GTSAC	2 cut(s)	275, 319
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	2 cut(s)	275, 319
TspDTI	ATGAA	3 cut(s)	109, 448, 510
TspRI	CASTG	1 cut(s)	142
Tth111I	GACNNNGTC	1 cut(s)	182
XceI	RCATGY	2 cut(s)	38, 297
XspI	CTAG	2 cut(s)	299, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.