Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

67452177 .. 67453798

Gene Structure 1622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAACGGGCACTTAGTTTGGTCCAAAGGTTCCGACTTTTCCGTTGAGGGCCTAGTGGATTTCCAGTTTGAGACCATACCGGATGGGCTGCCACCTTCGGATAAAGATGCGACACAAGATGTCCTAGCTTTATGTGACTCCACCAGGAAAACTTGTCTAGGTCCTTTTAAGGAGCTGGTGATGAAGATCAATTCATCATGTGAAGTGCCAAAAGTTAGTTGTGTAATCACAGATGGTGTGACGGGATTTGGGAGGGAAGCTGCTAAGGAATTAGGGGATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

94

Amino Acids

10.07

Weight (kDa)

4.53

Isoelectric Point (pI)

24.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	3 cut(s)	128, 175, 260
AluI	AGCT	3 cut(s)	128, 175, 260
Alw26I	GTCTC	1 cut(s)	65
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	2 cut(s)	88, 260
AspS9I	GGNCC	3 cut(s)	21, 49, 161
AsuHPI	GGTGA	1 cut(s)	190
AvaII	GGWCC	2 cut(s)	21, 161
BaeGI	GKGCMC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	75, 247
BccI	CCATC	2 cut(s)	77, 227
BciT130I	CCWGG	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	3 cut(s)	53, 125, 158
BisI	GCNGC	2 cut(s)	89, 261
BlsI	GCNGC	2 cut(s)	90, 262
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	2 cut(s)	21, 161
BmgT120I	GGNCC	3 cut(s)	21, 49, 161
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	264
BsaBI	GATNNNNATC	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	79
Bse1I	ACTGG	1 cut(s)	64
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	88
BseJI	GATNNNNATC	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	64
BseSI	GKGCMC	1 cut(s)	12
BseXI	GCAGC	2 cut(s)	75, 247
BshFI	GGCC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	13, 264
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	1 cut(s)	189
BstMAI	GTCTC	1 cut(s)	65
BstMBI	GATC	1 cut(s)	186
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	75, 247
BsuRI	GGCC	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	88
Cfr13I	GGNCC	3 cut(s)	21, 49, 161
CviAII	CATG	1 cut(s)	198
CviJI	RGCY	5 cut(s)	51, 88, 128, 175, 260
CviKI_1	RGCY	5 cut(s)	51, 88, 128, 175, 260
DdeI	CTNAG	2 cut(s)	13, 264
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	65
Eco47I	GGWCC	2 cut(s)	21, 161
EcoO109I	RGGNCCY	2 cut(s)	49, 161
EcoRII	CCWGG	1 cut(s)	143
FaeI	CATG	1 cut(s)	201
FaiI	YATR	3 cut(s)	77, 133, 199
FatI	CATG	1 cut(s)	197
Fnu4HI	GCNGC	2 cut(s)	89, 261
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	89, 261
FspBI	CTAG	3 cut(s)	53, 125, 158
GluI	GCNGC	2 cut(s)	89, 261
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	1 cut(s)	201
HinfI	GANTC	2 cut(s)	137, 278
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	34, 100
Hpy188III	TCNNGA	1 cut(s)	282
HpyAV	CCTTC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	13, 264
Hsp92II	CATG	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	186
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	5 cut(s)	77, 93, 130, 157, 161
Lsp1109I	GCAGC	2 cut(s)	75, 247
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	3 cut(s)	53, 125, 158
MaeIII	GTNAC	2 cut(s)	134, 238
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	190, 269
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	2 cut(s)	40, 246
MseI	TTAA	1 cut(s)	168
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	145
MvaI	CCWGG	1 cut(s)	145
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	201
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	134, 238
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	90, 262
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	3 cut(s)	21, 49, 161
PspPPI	RGGWCCY	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	89, 261
Sau3AI	GATC	1 cut(s)	186
Sau96I	GGNCC	3 cut(s)	21, 49, 161
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	6 cut(s)	31, 97, 130, 163, 177, 262
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	2 cut(s)	21, 161
Sse9I	AATT	2 cut(s)	190, 269
SspMI	CTAG	3 cut(s)	53, 125, 158
StyD4I	CCNGG	1 cut(s)	143
TasI	AATT	2 cut(s)	190, 269
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseFI	GTSAC	2 cut(s)	134, 238
TseI	GCWGC	2 cut(s)	88, 260
Tsp45I	GTSAC	2 cut(s)	134, 238
TspDTI	ATGAA	3 cut(s)	17, 183, 197
TspGWI	ACGGA	1 cut(s)	31
VpaK11BI	GGWCC	2 cut(s)	21, 161
XspI	CTAG	3 cut(s)	53, 125, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.