Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8230237.1

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

107 .. 637

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8230237.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggttgaaactgaaaccaaaacacaacctcatgtggtttgtgttccatacccatcacaaggccatattagccctatgatgcaattagccaagctcctaaactcaagaggcttctacataacctttgtcaacactgagtttaatcacaagcgcttaatcaggtccagagggcacacatcatccctttgccgcctgccggattttcggttcgaaaccataccagatggactgccaccatgtgacaaagatgcaacccaagatgttccagcactgagtgaatccaccagaacaaactgtcttggtccattcaaagagctactaatcaagcttaacaagttgtccgaagtgcccccggttagttgcgtaatctcagatggggttatgggttttgggagggaagctgctgtggaattgggtattccagaggttcagttttggactgcctctgcttgtggcttcatgggttacttgcagtatggtgaactcctgaaaagaggaatggctccatttaaaggtattattattttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

176

Amino Acids

19.57

Weight (kDa)

7.62

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	190
AdeI	CACNNNGTG	2 cut(s)	239, 275
AfeI	AGCGCT	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	59, 196, 512
AgsI	TTSAA	2 cut(s)	8, 310
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	4 cut(s)	94, 316, 328, 401
AluI	AGCT	4 cut(s)	94, 316, 328, 401
Aor51HI	AGCGCT	1 cut(s)	152
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	2 cut(s)	162, 302
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	1 cut(s)	491
AsuII	TTCGAA	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	162, 302
BaeGI	GKGCMC	2 cut(s)	174, 351
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	3 cut(s)	61, 218, 368
BcnI	CCSGG	1 cut(s)	353
BfaI	CTAG	1 cut(s)	529
BfoI	RGCGCY	1 cut(s)	154
BisI	GCNGC	2 cut(s)	190, 402
BlsI	GCNGC	2 cut(s)	191, 403
Bme1390I	CCNGG	1 cut(s)	353
Bme18I	GGWCC	2 cut(s)	162, 302
BmgT120I	GGNCC	2 cut(s)	162, 302
BmiI	GGNNCC	1 cut(s)	504
BmrFI	CCNGG	1 cut(s)	353
BmsI	GCATC	2 cut(s)	69, 238
Bpu14I	TTCGAA	1 cut(s)	210
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 196, 512
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	1 cut(s)	179
BseLI	CCNNNNNNNGG	3 cut(s)	59, 196, 512
BseMII	CTCAG	3 cut(s)	126, 263, 384
BseSI	GKGCMC	2 cut(s)	174, 351
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	1 cut(s)	63
BsiSI	CCGG	2 cut(s)	197, 353
BslI	CCNNNNNNNGG	3 cut(s)	59, 196, 512
BsnI	GGCC	1 cut(s)	63
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	174, 351
BspACI	CCGC	1 cut(s)	190
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	3 cut(s)	127, 264, 383
BspLI	GGNNCC	1 cut(s)	504
BspT104I	TTCGAA	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	296
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	135, 272, 370
BstF5I	GGATG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	351
BstSLI	GKGCMC	2 cut(s)	174, 351
BstV1I	GCAGC	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	179
BtsIMutI	CAGTG	2 cut(s)	132, 269
Cac8I	GCNNGC	1 cut(s)	194
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	2 cut(s)	162, 302
CviAII	CATG	3 cut(s)	32, 237, 460
DdeI	CTNAG	3 cut(s)	135, 272, 370
DraI	TTTAAA	1 cut(s)	511
DraIII	CACNNNGTG	2 cut(s)	239, 275
Eco47I	GGWCC	2 cut(s)	162, 302
Eco47III	AGCGCT	1 cut(s)	152
FaeI	CATG	3 cut(s)	35, 240, 463
FatI	CATG	3 cut(s)	31, 236, 459
Fnu4HI	GCNGC	2 cut(s)	190, 402
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	190, 402
FspBI	CTAG	1 cut(s)	529
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	2 cut(s)	190, 402
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	2 cut(s)	197, 353
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	35, 240, 463
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	2 cut(s)	197, 353
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	130, 482
Hpy188I	TCNGA	2 cut(s)	343, 373
Hpy188III	TCNNGA	4 cut(s)	105, 165, 422, 487
Hpy8I	GTNNAC	2 cut(s)	130, 482
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4V	TGCA	3 cut(s)	82, 251, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	3 cut(s)	135, 272, 370
Hsp92II	CATG	3 cut(s)	35, 240, 463
HspAI	GCGC	1 cut(s)	151
LmnI	GCTCC	2 cut(s)	99, 508
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	2 cut(s)	69, 238
MaeI	CTAG	1 cut(s)	529
MaeIII	GTNAC	2 cut(s)	239, 464
MhlI	GDGCHC	2 cut(s)	174, 351
MluCI	AATT	2 cut(s)	83, 410
MnlI	CCTC	7 cut(s)	39, 101, 161, 387, 418, 454, 488
MseI	TTAA	4 cut(s)	141, 155, 330, 510
MspI	CCGG	2 cut(s)	197, 353
MspR9I	CCNGG	1 cut(s)	353
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	353
NlaIII	CATG	3 cut(s)	35, 240, 463
NlaIV	GGNNCC	1 cut(s)	504
NmuCI	GTSAC	1 cut(s)	239
NspV	TTCGAA	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	191, 403
PspN4I	GGNNCC	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	162, 302
SaqAI	TTAA	4 cut(s)	141, 155, 330, 510
SatI	GCNGC	2 cut(s)	190, 402
Sau96I	GGNCC	2 cut(s)	162, 302
ScrFI	CCNGG	1 cut(s)	353
SduI	GDGCHC	2 cut(s)	174, 351
SetI	ASST	9 cut(s)	31, 96, 125, 164, 318, 330, 403, 429, 517
SfaNI	GCATC	2 cut(s)	69, 238
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	2 cut(s)	162, 302
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	2 cut(s)	83, 410
SsiI	CCGC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	529
StyD4I	CCNGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	210
TasI	AATT	2 cut(s)	83, 410
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	4 cut(s)	141, 155, 330, 510
Tru9I	TTAA	4 cut(s)	141, 155, 330, 510
TscAI	CASTG	2 cut(s)	139, 276
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	448
TspRI	CASTG	2 cut(s)	139, 276
VpaK11BI	GGWCC	2 cut(s)	162, 302
XspI	CTAG	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.