Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

11149076 .. 11154421

Gene Structure 5346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGATGTTGGTTGTGATCACAAGCCTCATGCCGTTTGTATTCCATCTCCAGCTCAGAGTCACATCAAGAGTTTTCTTCAGTTTGCCAAAACCCTCCACCACAGAGGCTTTCACATAACCTTTGTCAACACTGAATTCAACCACAAGCGATTTCTTAAATCTCGAGGACCCAACTCCCTCGATGGCTTACCTGATTTTCGCTTTGAAGCCATTCCTGATGGCCTTCCAGAATCAGATGAAGATGCCACCCAAGAGACCAATTTGTTATTTGAATCCATCAGAAATCATCTCTTGACTCCATTTCGTGACCTCCTGTCAAAACTCAACAGTAGCACTAGTTCCCCAGTTACCTGCATTGTTTCCGATTTATTCATGTCCAGTTTTACCATCACGGCTGCAGAAGAACATGGAGTCCCTATTGCATTGTTGAGCACTATTTCTGCTTCCGCTTTCATGGGATTCAGGAAATTCCGAACTTTACTTGAGAAAGGACTTTTTCCACTTAAAGATGAGAGCTGTTTGACAAATGGGTTTCTAGACAACACAATAGAATGGATTCCAGGAAAGAAAGATATTTGTTTGAAGTATCTGCCTACTTTTTGTCGAACTACAGATCCAGACGACATCCTCTTCAACACCACCATTGAAGCACTGGAAAACGCAAATAAAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

225

Amino Acids

25.11

Weight (kDa)

5.83

Isoelectric Point (pI)

44.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	1 cut(s)	608
AcsI	RAATTY	2 cut(s)	134, 467
AcuI	CTGAAG	1 cut(s)	62
AgsI	TTSAA	6 cut(s)	139, 206, 272, 583, 634, 647
AhdI	GACNNNNNGTC	1 cut(s)	313
AhlI	ACTAGT	1 cut(s)	335
AjnI	CCWGG	1 cut(s)	559
AloI	GAACNNNNNNTCC	4 cut(s)	396, 428, 598, 630
AluBI	AGCT	2 cut(s)	53, 516
AluI	AGCT	2 cut(s)	53, 516
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	162
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	395
ApoI	RAATTY	2 cut(s)	134, 467
Asp700I	GAANNNNTTC	2 cut(s)	210, 555
AspS9I	GGNCC	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	5 cut(s)	52, 176, 212, 284, 395
BceAI	ACGGC	2 cut(s)	17, 408
BciT130I	CCWGG	1 cut(s)	561
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	1 cut(s)	248
BcuI	ACTAGT	1 cut(s)	335
BfaI	CTAG	2 cut(s)	336, 536
BfmI	CTRYAG	2 cut(s)	396, 609
BfuAI	ACCTGC	1 cut(s)	359
BisI	GCNGC	1 cut(s)	396
BlsI	GCNGC	1 cut(s)	397
Bme1390I	CCNGG	1 cut(s)	561
Bme18I	GGWCC	1 cut(s)	167
BmeRI	GACNNNNNGTC	1 cut(s)	313
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	561
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	338
BpmI	CTGGAG	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	248
Bse1I	ACTGG	3 cut(s)	344, 378, 657
BseBI	CCWGG	1 cut(s)	561
BseGI	GGATG	2 cut(s)	10, 624
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	3 cut(s)	344, 378, 657
BseXI	GCAGC	1 cut(s)	382
BshFI	GGCC	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	434
BsiHKCI	CYCGRG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	222
Bso31I	GGTCTC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	2 cut(s)	16, 613
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	400
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	608
BspTNI	GGTCTC	1 cut(s)	248
BsrI	ACTGG	3 cut(s)	344, 378, 657
BssMI	GATC	2 cut(s)	16, 613
Bst2UI	CCWGG	1 cut(s)	561
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	1 cut(s)	635
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	10, 624
BstKTI	GATC	2 cut(s)	19, 616
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	2 cut(s)	16, 613
BstNI	CCWGG	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	559
BstSFI	CTRYAG	2 cut(s)	396, 609
BstV1I	GCAGC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	10, 624
BtsIMutI	CAGTG	2 cut(s)	129, 650
BveI	ACCTGC	1 cut(s)	359
Cfr13I	GGNCC	1 cut(s)	167
CviAII	CATG	4 cut(s)	29, 373, 407, 454
CviJI	RGCY	8 cut(s)	25, 53, 108, 186, 209, 222, 395, 516
CviKI_1	RGCY	8 cut(s)	25, 53, 108, 186, 209, 222, 395, 516
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	2 cut(s)	18, 615
DpnII	GATC	2 cut(s)	16, 613
DriI	GACNNNNNGTC	1 cut(s)	313
Eam1104I	CTCTTC	1 cut(s)	635
Eam1105I	GACNNNNNGTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	635
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	167
Eco57I	CTGAAG	1 cut(s)	62
Eco88I	CYCGRG	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	559
FaeI	CATG	4 cut(s)	32, 376, 410, 457
FaiI	YATR	5 cut(s)	30, 116, 374, 408, 455
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	4 cut(s)	28, 372, 406, 453
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	396
FokI	GGATG	2 cut(s)	17, 611
Fsp4HI	GCNGC	1 cut(s)	396
FspBI	CTAG	2 cut(s)	336, 536
GluI	GCNGC	1 cut(s)	396
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	222
Hin1II	CATG	4 cut(s)	32, 376, 410, 457
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	7 cut(s)	58, 230, 272, 295, 411, 459, 556
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	5 cut(s)	57, 235, 281, 364, 473
Hpy188III	TCNNGA	9 cut(s)	67, 162, 215, 227, 292, 305, 463, 536, 617
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	3 cut(s)	354, 398, 422
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	4 cut(s)	32, 376, 410, 457
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	16, 613
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	336, 536
MaeIII	GTNAC	3 cut(s)	59, 305, 346
MalI	GATC	2 cut(s)	18, 615
MboI	GATC	2 cut(s)	16, 613
MboII	GAAGA	4 cut(s)	68, 251, 413, 622
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	3 cut(s)	134, 259, 467
MlyI	GAGTC	3 cut(s)	67, 289, 420
MnlI	CCTC	7 cut(s)	36, 98, 104, 158, 188, 320, 638
MroXI	GAANNNNTTC	2 cut(s)	210, 555
MseI	TTAA	3 cut(s)	156, 504, 673
MspR9I	CCNGG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	561
NdeII	GATC	2 cut(s)	16, 613
NlaIII	CATG	4 cut(s)	32, 376, 410, 457
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	59, 305
PaeR7I	CTCGAG	1 cut(s)	162
PdmI	GAANNNNTTC	2 cut(s)	210, 555
PfeI	GAWTC	4 cut(s)	230, 272, 459, 556
PfoI	TCCNGGA	1 cut(s)	559
PkrI	GCNGC	1 cut(s)	397
PleI	GAGTC	3 cut(s)	66, 289, 419
PpsI	GAGTC	3 cut(s)	66, 289, 419
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	559
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	167
PspPPI	RGGWCCY	1 cut(s)	167
PsrI	GAACNNNNNNTAC	2 cut(s)	322, 354
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	613
SaqAI	TTAA	3 cut(s)	156, 504, 673
SatI	GCNGC	1 cut(s)	396
Sau3AI	GATC	2 cut(s)	16, 613
Sau96I	GGNCC	1 cut(s)	167
SchI	GAGTC	3 cut(s)	67, 289, 420
ScrFI	CCNGG	1 cut(s)	561
SduI	GDGCHC	1 cut(s)	434
SetI	ASST	6 cut(s)	55, 122, 193, 312, 353, 518
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	2 cut(s)	396, 609
Sfr274I	CTCGAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	162
SmlI	CTYRAG	2 cut(s)	162, 482
SmoI	CTYRAG	2 cut(s)	162, 482
SpeI	ACTAGT	1 cut(s)	335
Sse9I	AATT	3 cut(s)	134, 259, 467
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	2 cut(s)	336, 536
StyD4I	CCNGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	3 cut(s)	163, 180, 604
TasI	AATT	3 cut(s)	134, 259, 467
TfiI	GAWTC	4 cut(s)	230, 272, 459, 556
Tru1I	TTAA	3 cut(s)	156, 504, 673
Tru9I	TTAA	3 cut(s)	156, 504, 673
TscAI	CASTG	2 cut(s)	136, 657
TseFI	GTSAC	2 cut(s)	59, 305
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	2 cut(s)	59, 305
TspDTI	ATGAA	3 cut(s)	252, 361, 442
TspRI	CASTG	2 cut(s)	136, 657
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	2 cut(s)	134, 467
XbaI	TCTAGA	1 cut(s)	535
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XhoI	CTCGAG	1 cut(s)	162
XmnI	GAANNNNTTC	2 cut(s)	210, 555
XspI	CTAG	2 cut(s)	336, 536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.