Rorug05G0112700

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000975
Physical Location & Seq
Forward (+)
10043950 .. 10045504
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0112700.1

Sequence Viewer

Length: 1086 bp
ATGGAAACCCAAGGAAGTCTGGAAAATTATGTCTCAGTTTGGAATCTGGGAAATTCGGTTTGCATTCAAATGGCTCTAAGAGCTGCAATAGAGCTCGATGTCTTCAATATCATTGCTAAGTCAGGGCCAGAAGCTCATCTTACATCAAAAGAAATTGTTTCAGCAATCCCCACCACAAACCCAAATGTAGCAGCTAAGAATTTAGAGCGAATCCTTAAGCTTCTTAGTGTCAATTCCCTCCTTTCTACCTCTCTCAAACCAAGCCTAAATGACAAAACACCACAAGAAAGGGCTTATGGCCTAACAAAAAATGCACTTTGCCTGGTGCCAAATGAAGATGGAGTTTCTATCGCACCATTAATTATGTCAGGCTCTGAAATGCACGTTATACAGAGCTTATACATGCTCAAGCACTCAGTGCTTGAGCCAGAGAGTATTCCGTTCTATAAATTCTACGGAGAAAATTTTTATGAATACATGTCCCAGAGACCTGAGACCTTTTCATCGTTCAACAAGCTCATGAGAACAACCTCTTATTTATATTTTGATCAGAAGGTGCTTAAGGTTTATCGAGGTTTTGAAGAAGTGAAAGAGCTTATGGATGTAGGGGGTGGTGATGGAAGTTCCCTTGCAAAAATTGTGTCTATGTATCCTCACATCCATGGCATCAATTTCAACTTGCCTAGTGTTATTGCTCAGGCTCCTAAATATCAAGGTGTGAAGCATGTAAGTGGAGATATGTTTGACTCGATACCAAAAACACAGTCAATTATATTGAAGTGGGTACTTCATAACTGGGATGATGAGCATTGCAAGAAGATATTGAGAAACTGTTGGGAGGCGTTACCAGAAACCGGAAAAGTAATAGTTGTGGAATATTTCATGCTTCCCGAAGAATTAGAGAATACCCTAGAAACAATGCAGATATTAACGGCTGATGTTATCATGATGACATTTTTTTATGGTAAGGAGCGAACAATAGCTGAAATTGATAACCTAGCCAAAAGTGTAGGGTTTATTGAAACAAAGATTGTCCATGTTTCTCATGGAACATATGTTATCGAGTTCCTCAAGAAAAAACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

361

Amino Acids

40.82

Weight (kDa)

6.02

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 14 - 109 2.6e-11 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 136 - 339 1.6e-52 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 325
AcsI RAATTY 4 cut(s) 52, 199, 449, 463
AdeI CACNNNGTG 1 cut(s) 418
AfaI GTAC 1 cut(s) 786
AfiI CCNNNNNNNGG 1 cut(s) 854
AflII CTTAAG 2 cut(s) 215, 560
AflIII ACRYGT 1 cut(s) 477
AgsI TTSAA 7 cut(s) 68, 106, 511, 581, 676, 778, 1022
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 9 cut(s) 83, 94, 134, 194, 220, 396, 517, 595, 983
AluI AGCT 9 cut(s) 83, 94, 134, 194, 220, 396, 517, 595, 983
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 3 cut(s) 37, 481, 488
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 2 cut(s) 125, 298
ApeKI GCWGC 2 cut(s) 83, 191
ApoI RAATTY 4 cut(s) 52, 199, 449, 463
ArsI GACNNNNNNTTYG 4 cut(s) 626, 658, 749, 781
AseI ATTAAT 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 125
AsuHPI GGTGA 1 cut(s) 626
BanI GGYRCC 1 cut(s) 325
BanII GRGCYC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 2 cut(s) 70, 203
BccI CCATC 2 cut(s) 332, 611
BceAI ACGGC 1 cut(s) 948
BciT130I CCWGG 1 cut(s) 323
BciVI GTATCC 1 cut(s) 660
BclI TGATCA 1 cut(s) 547
BcoDI GTCTC 3 cut(s) 37, 481, 488
BfaI CTAG 3 cut(s) 684, 911, 998
BfrI CTTAAG 2 cut(s) 215, 560
BfuI GTATCC 1 cut(s) 660
BisI GCNGC 2 cut(s) 84, 192
BlsI GCNGC 2 cut(s) 85, 193
Bme1390I CCNGG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 2 cut(s) 327, 702
BmrFI CCNGG 1 cut(s) 323
BmrI ACTGGG 1 cut(s) 805
BmsI GCATC 1 cut(s) 675
BmuI ACTGGG 1 cut(s) 805
BpiI GAAGAC 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 696
BpuEI CTTGAG 3 cut(s) 392, 443, 1055
BsaI GGTCTC 2 cut(s) 481, 488
BsaJI CCNNGG 2 cut(s) 10, 661
BsaWI WCCGGW 1 cut(s) 854
Bsc4I CCNNNNNNNGG 1 cut(s) 854
Bse1I ACTGG 1 cut(s) 800
Bse3DI GCAATG 2 cut(s) 111, 808
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 2 cut(s) 10, 661
BseGI GGATG 3 cut(s) 607, 657, 805
BseLI CCNNNNNNNGG 1 cut(s) 854
BseMI GCAATG 2 cut(s) 111, 808
BseMII CTCAG 4 cut(s) 48, 429, 483, 710
BseNI ACTGG 1 cut(s) 800
BseXI GCAGC 2 cut(s) 70, 203
BshFI GGCC 2 cut(s) 127, 300
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 855
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 854
BsmAI GTCTC 3 cut(s) 37, 481, 488
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 63
BsnI GGCC 2 cut(s) 127, 300
Bso31I GGTCTC 2 cut(s) 481, 488
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 547
Bsp19I CCATGG 1 cut(s) 661
BspANI GGCC 2 cut(s) 127, 300
BspCNI CTCAG 4 cut(s) 47, 428, 484, 709
BspHI TCATGA 2 cut(s) 519, 945
BspLI GGNNCC 2 cut(s) 327, 702
BspT107I GGYRCC 1 cut(s) 325
BspTI CTTAAG 2 cut(s) 215, 560
BspTNI GGTCTC 2 cut(s) 481, 488
BsrDI GCAATG 2 cut(s) 111, 808
BsrI ACTGG 1 cut(s) 800
BssECI CCNNGG 2 cut(s) 10, 661
BssMI GATC 1 cut(s) 547
BssT1I CCWWGG 2 cut(s) 10, 661
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 765, 833
BstAFI CTTAAG 2 cut(s) 215, 560
BstAPI GCANNNNNTGC 1 cut(s) 418
BstDEI CTNAG 8 cut(s) 34, 77, 117, 195, 224, 415, 492, 696
BstDSI CCRYGG 1 cut(s) 661
BstF5I GGATG 3 cut(s) 607, 657, 805
BstKTI GATC 1 cut(s) 550
BstMAI GTCTC 3 cut(s) 37, 481, 488
BstMBI GATC 1 cut(s) 547
BstMWI GCNNNNNNNGC 2 cut(s) 80, 418
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 3 cut(s) 406, 481, 728
BstSCI CCNGG 1 cut(s) 321
BstV1I GCAGC 2 cut(s) 70, 203
BstV2I GAAGAC 1 cut(s) 94
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 2 cut(s) 127, 300
BtgI CCRYGG 1 cut(s) 661
BtsCI GGATG 3 cut(s) 607, 657, 805
BtsIMutI CAGTG 1 cut(s) 423
CaiI CAGNNNCTG 1 cut(s) 374
CciI TCATGA 2 cut(s) 519, 945
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 785
CviAII CATG 9 cut(s) 403, 478, 520, 662, 725, 883, 946, 1037, 1046
CviQI GTAC 1 cut(s) 785
DdeI CTNAG 8 cut(s) 34, 77, 117, 195, 224, 415, 492, 696
DpnI GATC 1 cut(s) 549
DpnII GATC 1 cut(s) 547
DraIII CACNNNGTG 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 94
Eco130I CCWWGG 2 cut(s) 10, 661
Eco24I GRGCYC 1 cut(s) 96
Eco31I GGTCTC 2 cut(s) 481, 488
Eco53kI GAGCTC 1 cut(s) 94
EcoICRI GAGCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 321
EcoT14I CCWWGG 2 cut(s) 10, 661
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 2 cut(s) 10, 661
FaeI CATG 9 cut(s) 406, 481, 523, 665, 728, 886, 949, 1040, 1049
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 1 cut(s) 466
FatI CATG 9 cut(s) 402, 477, 519, 661, 724, 882, 945, 1036, 1045
FauNDI CATATG 1 cut(s) 1054
FbaI TGATCA 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 84, 192
FokI GGATG 3 cut(s) 614, 644, 812
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 2 cut(s) 84, 192
FspBI CTAG 3 cut(s) 684, 911, 998
GluI GCNGC 2 cut(s) 84, 192
HaeIII GGCC 2 cut(s) 127, 300
HapII CCGG 1 cut(s) 855
Hin1II CATG 9 cut(s) 406, 481, 523, 665, 728, 886, 949, 1040, 1049
HindIII AAGCTT 1 cut(s) 218
HinfI GANTC 3 cut(s) 43, 210, 746
HpaII CCGG 1 cut(s) 855
HphI GGTGA 1 cut(s) 626
Hpy188I TCNGA 2 cut(s) 376, 552
Hpy188III TCNNGA 5 cut(s) 20, 520, 890, 946, 1072
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 2 cut(s) 765, 833
HpyCH4IV ACGT 1 cut(s) 384
HpyCH4V TGCA 7 cut(s) 63, 86, 314, 382, 632, 813, 922
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 418
HpyF3I CTNAG 8 cut(s) 34, 77, 117, 195, 224, 415, 492, 696
HpySE526I ACGT 1 cut(s) 384
Hsp92II CATG 9 cut(s) 406, 481, 523, 665, 728, 886, 949, 1040, 1049
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 1 cut(s) 547
LmnI GCTCC 2 cut(s) 706, 970
Lsp1109I GCAGC 2 cut(s) 70, 203
LweI GCATC 1 cut(s) 675
MaeI CTAG 3 cut(s) 684, 911, 998
MaeII ACGT 1 cut(s) 384
MaeIII GTNAC 1 cut(s) 843
MalI GATC 1 cut(s) 549
MboI GATC 1 cut(s) 547
MboII GAAGA 5 cut(s) 94, 347, 593, 829, 905
MhlI GDGCHC 1 cut(s) 96
MlyI GAGTC 1 cut(s) 740
MnlI CCTC 7 cut(s) 248, 259, 541, 566, 663, 832, 1079
MseI TTAA 5 cut(s) 216, 359, 561, 929, 1084
MslI CAYNNNNRTG 3 cut(s) 68, 660, 729
MspCI CTTAAG 2 cut(s) 215, 560
MspI CCGG 1 cut(s) 855
MspR9I CCNGG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 63
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 2 cut(s) 80, 418
NcoI CCATGG 1 cut(s) 661
NdeI CATATG 1 cut(s) 1054
NdeII GATC 1 cut(s) 547
NlaIII CATG 9 cut(s) 406, 481, 523, 665, 728, 886, 949, 1040, 1049
NlaIV GGNNCC 2 cut(s) 327, 702
NspI RCATGY 3 cut(s) 406, 481, 728
PagI TCATGA 2 cut(s) 519, 945
PciI ACATGT 1 cut(s) 477
PctI GAATGC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 43, 210
PkrI GCNGC 2 cut(s) 85, 193
PleI GAGTC 1 cut(s) 740
PpsI GAGTC 1 cut(s) 740
PscI ACATGT 1 cut(s) 477
PshBI ATTAAT 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspN4I GGNNCC 2 cut(s) 327, 702
PspPI GGNCC 1 cut(s) 125
PstNI CAGNNNCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 786
RsaNI GTAC 1 cut(s) 785
RseI CAYNNNNRTG 3 cut(s) 68, 660, 729
SacI GAGCTC 1 cut(s) 96
SaqAI TTAA 5 cut(s) 216, 359, 561, 929, 1084
SatI GCNGC 2 cut(s) 84, 192
Sau3AI GATC 1 cut(s) 547
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 1 cut(s) 96
SfaNI GCATC 1 cut(s) 675
SmiMI CAYNNNNRTG 3 cut(s) 68, 660, 729
SmlI CTYRAG 5 cut(s) 215, 407, 422, 560, 1070
SmoI CTYRAG 5 cut(s) 215, 407, 422, 560, 1070
SspI AATATT 1 cut(s) 878
SspMI CTAG 3 cut(s) 684, 911, 998
SstI GAGCTC 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 321
StyI CCWWGG 2 cut(s) 10, 661
TaaI ACNGT 2 cut(s) 765, 833
TaiI ACGT 1 cut(s) 387
TaqI TCGA 4 cut(s) 96, 571, 749, 1062
TfiI GAWTC 2 cut(s) 43, 210
Tru1I TTAA 5 cut(s) 216, 359, 561, 929, 1084
Tru9I TTAA 5 cut(s) 216, 359, 561, 929, 1084
TscAI CASTG 1 cut(s) 423
TseI GCWGC 2 cut(s) 83, 191
TspDTI ATGAA 5 cut(s) 348, 486, 492, 779, 871
TspGWI ACGGA 2 cut(s) 429, 471
TspRI CASTG 1 cut(s) 423
Vha464I CTTAAG 2 cut(s) 215, 560
VspI ATTAAT 1 cut(s) 359
XapI RAATTY 4 cut(s) 52, 199, 449, 463
XceI RCATGY 3 cut(s) 406, 481, 728
XcmI CCANNNNNNNNNTGG 1 cut(s) 1043
XspI CTAG 3 cut(s) 684, 911, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.