Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

23221113 .. 23221899

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1185400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCTTCAATTTCCTTGAGACAGAAGCCACATGCAGTTCTTGTACCATTCCCGTCGCAAGGACACATAAACCCACTGATGCAATTAGCCAAAGTCCTCCACTACAAAGGGTTTCACATAACATTTGTGCACACAGAGTACAACTACAGACGCCTCCTTAAATCCCGGGGTTCCAACTCTCTTGACGGCCTCCCCACCTTCCGATTTGTGACCATTCCCGATGGCCTCCCTGCAACTGATGCCAATGCCACCCAAGACATACCACTCTTATGTGATTCCACTAGCAAACACTGCTTGCCTCACTTTAGAAACCTTTTGAAGAAGCTCAGTTCTTCGCCCGATTCGCCTCCCATCACATGCATAATTTGTGATGGTGTCATGAGCTTCACTCTTGATGCAGCCCAGGAATTGGGGCTTCCTGCAGTTTTTTTCTGGACACCAAGTGCTTGTGGCTTCATGGGCTACGTTCAGTTTCACCGTCTCATCGAAAAGGGTCTCACTCCATTTAAAGGGGAGGGATCCCCATTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

178

Amino Acids

19.63

Weight (kDa)

8.87

Isoelectric Point (pI)

56.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	13 - 136	6.5e-07	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	409
AclWI	GGATC	2 cut(s)	513, 526
AcyI	GRCGYC	1 cut(s)	151
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	2 cut(s)	45, 140
AfiI	CCNNNNNNNGG	3 cut(s)	59, 409, 509
AgsI	TTSAA	2 cut(s)	9, 319
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	2 cut(s)	325, 384
AluI	AGCT	2 cut(s)	325, 384
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	3 cut(s)	13, 485, 500
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	2 cut(s)	513, 526
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	2 cut(s)	187, 223
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	398
AsuC2I	CCSGG	2 cut(s)	166, 167
AsuHPI	GGTGA	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	410
BccI	CCATC	3 cut(s)	215, 359, 365
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	404
BcnI	CCSGG	2 cut(s)	166, 167
BcoDI	GTCTC	3 cut(s)	13, 485, 500
BfaI	CTAG	1 cut(s)	282
BfmI	CTRYAG	2 cut(s)	145, 420
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
Bme1390I	CCNGG	3 cut(s)	166, 167, 404
BmeT110I	CYCGRG	1 cut(s)	165
BmiI	GGNNCC	2 cut(s)	172, 520
BmrFI	CCNGG	3 cut(s)	166, 167, 404
BmsI	GCATC	3 cut(s)	69, 229, 385
BplI	GAGNNNNNCTC	2 cut(s)	373, 405
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	2 cut(s)	166, 167
BsaHI	GRCGYC	1 cut(s)	151
BsaI	GGTCTC	1 cut(s)	500
BsaJI	CCNNGG	3 cut(s)	165, 166, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	59, 409, 509
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	3 cut(s)	165, 166, 402
BseLI	CCNNNNNNNGG	3 cut(s)	59, 409, 509
BseMII	CTCAG	1 cut(s)	340
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	410
BshFI	GGCC	2 cut(s)	189, 225
BsiHKAI	GWGCWC	1 cut(s)	132
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	166
BslI	CCNNNNNNNGG	3 cut(s)	59, 409, 509
BsmAI	GTCTC	3 cut(s)	13, 485, 500
BsmBI	CGTCTC	1 cut(s)	485
BsnI	GGCC	2 cut(s)	189, 225
Bso31I	GGTCTC	1 cut(s)	500
BsoBI	CYCGRG	1 cut(s)	165
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	518
BspANI	GGCC	2 cut(s)	189, 225
BspCNI	CTCAG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	172, 520
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	2 cut(s)	513, 526
BspTNI	GGTCTC	1 cut(s)	500
BssECI	CCNNGG	3 cut(s)	165, 166, 402
BssMI	GATC	1 cut(s)	518
BssNI	GRCGYC	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	1 cut(s)	479
BstACI	GRCGYC	1 cut(s)	151
BstAPI	GCANNNNNTGC	2 cut(s)	239, 291
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	326
BstKTI	GATC	1 cut(s)	521
BstMAI	GTCTC	3 cut(s)	13, 485, 500
BstMBI	GATC	1 cut(s)	518
BstMWI	GCNNNNNNNGC	4 cut(s)	239, 291, 343, 459
BstNI	CCWGG	1 cut(s)	404
BstNSI	RCATGY	2 cut(s)	35, 360
BstSCI	CCNGG	3 cut(s)	164, 165, 402
BstSFI	CTRYAG	2 cut(s)	145, 420
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	410
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
BsuRI	GGCC	2 cut(s)	189, 225
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	74, 289
Cac8I	GCNNGC	1 cut(s)	296
CciI	TCATGA	1 cut(s)	378
Cfr9I	CCCGGG	1 cut(s)	165
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	2 cut(s)	44, 139
CviAII	CATG	4 cut(s)	32, 357, 379, 457
CviQI	GTAC	2 cut(s)	44, 139
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	1 cut(s)	520
DpnII	GATC	1 cut(s)	518
DraI	TTTAAA	1 cut(s)	508
DraIII	CACNNNGTG	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	402
EcoT22I	ATGCAT	1 cut(s)	362
Esp3I	CGTCTC	1 cut(s)	485
FaeI	CATG	4 cut(s)	35, 360, 382, 460
FaiI	YATR	9 cut(s)	33, 68, 119, 260, 271, 358, 362, 380, 458
FatI	CATG	4 cut(s)	31, 356, 378, 456
Fnu4HI	GCNGC	1 cut(s)	399
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	1 cut(s)	282
GluI	GCNGC	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	189, 225
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	1 cut(s)	159
Hin1I	GRCGYC	1 cut(s)	151
Hin1II	CATG	4 cut(s)	35, 360, 382, 460
HinfI	GANTC	2 cut(s)	275, 341
HpaII	CCGG	1 cut(s)	166
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	1 cut(s)	203
Hpy188III	TCNNGA	5 cut(s)	182, 218, 379, 392, 433
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	208
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	7 cut(s)	35, 82, 130, 233, 360, 398, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	239, 291, 343, 459
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	465
Hsp92I	GRCGYC	1 cut(s)	151
Hsp92II	CATG	4 cut(s)	35, 360, 382, 460
Kzo9I	GATC	1 cut(s)	518
LpnPI	CCDG	6 cut(s)	179, 243, 389, 416, 418, 432
Lsp1109I	GCAGC	1 cut(s)	410
LweI	GCATC	3 cut(s)	69, 229, 385
MaeI	CTAG	1 cut(s)	282
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	520
MboI	GATC	1 cut(s)	518
MboII	GAAGA	2 cut(s)	324, 331
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	4 cut(s)	9, 83, 363, 407
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	7 cut(s)	107, 164, 200, 236, 309, 357, 508
Mph1103I	ATGCAT	1 cut(s)	362
MseI	TTAA	2 cut(s)	159, 507
MslI	CAYNNNNRTG	1 cut(s)	268
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	3 cut(s)	166, 167, 404
MvaI	CCWGG	1 cut(s)	404
MwoI	GCNNNNNNNGC	4 cut(s)	239, 291, 343, 459
NciI	CCSGG	2 cut(s)	166, 167
NdeII	GATC	1 cut(s)	518
NlaIII	CATG	4 cut(s)	35, 360, 382, 460
NlaIV	GGNNCC	2 cut(s)	172, 520
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	362
NspI	RCATGY	2 cut(s)	35, 360
PagI	TCATGA	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	275, 341
PflMI	CCANNNNNTGG	1 cut(s)	409
PkrI	GCNGC	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	2 cut(s)	172, 520
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	518
RsaI	GTAC	2 cut(s)	45, 140
RsaNI	GTAC	2 cut(s)	44, 139
RseI	CAYNNNNRTG	1 cut(s)	268
SaqAI	TTAA	2 cut(s)	159, 507
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	1 cut(s)	518
ScrFI	CCNGG	3 cut(s)	166, 167, 404
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	5 cut(s)	200, 315, 327, 386, 468
SfaNI	GCATC	3 cut(s)	69, 229, 385
SfcI	CTRYAG	2 cut(s)	145, 420
SmaI	CCCGGG	1 cut(s)	167
SmiMI	CAYNNNNRTG	1 cut(s)	268
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
Sse9I	AATT	4 cut(s)	9, 83, 363, 407
SspMI	CTAG	1 cut(s)	282
StyD4I	CCNGG	3 cut(s)	164, 165, 402
TaaI	ACNGT	1 cut(s)	479
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	1 cut(s)	486
TasI	AATT	4 cut(s)	9, 83, 363, 407
TatI	WGTACW	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	275, 341
Tru1I	TTAA	2 cut(s)	159, 507
Tru9I	TTAA	2 cut(s)	159, 507
TscAI	CASTG	2 cut(s)	81, 296
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	445
TspMI	CCCGGG	1 cut(s)	165
TspRI	CASTG	2 cut(s)	81, 296
Van91I	CCANNNNNTGG	1 cut(s)	409
VneI	GTGCAC	1 cut(s)	128
XceI	RCATGY	2 cut(s)	35, 360
XmaI	CCCGGG	1 cut(s)	165
XspI	CTAG	1 cut(s)	282
Zsp2I	ATGCAT	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.