RchiOBHm_Chr3g0480671

OTU domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000975
Physical Location & Seq
Reverse (-)
26498259 .. 26501717
3459 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44568

Sequence Viewer

Length: 978 bp
ATGGGTTCCTATGGTTTGATGGCAGAGACCAAGTCACATGCTGTATGCATCCCTTACCCAGCTCAGGGTCACATAAACCGTATGCTCCAGTTAGCCAAGCTCCTCCACCACAAGGGCTTCCACATCACCTTCGTCAACACCGAATACAACCACAGGCGCCTCCTCAACTCCCCAGGCCCCAACGCCCTCGACGGCCTCCCTTCTTTTCAGTTCAAGACCATCCCCGATGGGGTCCCTCCTACCGACACAAATTCCACGCAGGACATACCGGCACTGTGCCAGTCCACCAGGAAGTACTGCCTCCCGCACTTCAGGGAGCTTCTTGGGAAGCTGAACTCTGAGGCGGACTCGCCGCCGGTGAGCTGCGTGGTTTCTGATGGAGTCATGAGCTTCACTCTTGATGCGGCCGAGGAACTTGGGGTGCCGGGTTACACTCTTGAAGCACACGCTGAAGCAGCTCATAAGACTGATGATAAGGAAGATGATGGTGATTTGTCATATTCACATGGAAAAAAAGTTTATACTGATTATTCCATTATTGGAATACCTGGAGATGGAAGGTGCATGTTCCGTTCTGTTGCTCATGGCGCTTGTTTACGAGCTGGAAAATCAGTTCCTAGTCCAAGCCTTCAGAGAGAATTAGCAGATGACTTGAGAGCTAGAGTTGCAGATGAGTTTATCAAAAGGAGAGAAGAGACAGAAGGGTTTGTTGAAGGTGATTTTGACACATATGTCTCCCACATAAGAAAGCCACATGTATGGGGAGGCGAGCCCGAATTGTCAATGGCTTCACATGTTCTTGAAATGCCGATCACAGTATACATGTATGATGAAAAGGCTGGCGGCCTGATAACCATTGCTGGGTATGGGCGGCAAGAATATGGGAAGGAAAATCCAATCAGAGTTCTCTATCATGGTTTTGGCCATTATGATGCATTGCAAATTCCGGGGAAGAGTGGTGGTAAATCTAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OTU

Protein Analysis

325

Amino Acids

35.78

Weight (kDa)

6.05

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 15 - 150 4.5e-08 Glycosyltransferase, N-terminal domain
OTU PF02338 183 - 310 3.7e-26 OTU-like cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 731
AccB1I GGYRCC 2 cut(s) 156, 421
AccI GTMKAC 1 cut(s) 819
AciI CCGC 6 cut(s) 305, 344, 353, 404, 843, 871
AcoI YGGCCR 2 cut(s) 405, 922
AcsI RAATTY 2 cut(s) 250, 942
AcuI CTGAAG 3 cut(s) 295, 471, 614
AcyI GRCGYC 1 cut(s) 157
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 6 cut(s) 64, 65, 112, 229, 554, 861
AflIII ACRYGT 3 cut(s) 754, 793, 822
AgsI TTSAA 4 cut(s) 214, 440, 713, 803
AjnI CCWGG 3 cut(s) 172, 287, 547
AloI GAACNNNNNNTCC 2 cut(s) 597, 629
Alw26I GTCTC 3 cut(s) 20, 689, 739
AoxI GGCC 5 cut(s) 175, 193, 405, 844, 922
ApeKI GCWGC 2 cut(s) 363, 455
ApoI RAATTY 2 cut(s) 250, 942
AspLEI GCGC 2 cut(s) 159, 590
AspS9I GGNCC 2 cut(s) 176, 232
AsuC2I CCSGG 2 cut(s) 426, 948
AsuHPI GGTGA 4 cut(s) 118, 370, 500, 728
AvaII GGWCC 1 cut(s) 232
BalI TGGCCA 1 cut(s) 924
BanI GGYRCC 2 cut(s) 156, 421
BanII GRGCYC 1 cut(s) 774
BbvI GCAGC 2 cut(s) 350, 467
BccI CCATC 6 cut(s) 13, 221, 227, 371, 479, 548
BceAI ACGGC 1 cut(s) 208
BciT130I CCWGG 3 cut(s) 174, 289, 549
BcnI CCSGG 2 cut(s) 426, 948
BcoDI GTCTC 3 cut(s) 20, 689, 739
BfaI CTAG 2 cut(s) 618, 660
BfoI RGCGCY 2 cut(s) 160, 591
BisI GCNGC 6 cut(s) 353, 364, 405, 456, 844, 872
BlsI GCNGC 6 cut(s) 354, 365, 406, 457, 845, 873
BmcAI AGTACT 1 cut(s) 296
Bme1390I CCNGG 5 cut(s) 174, 289, 426, 549, 948
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 2 cut(s) 176, 232
BmiI GGNNCC 6 cut(s) 7, 158, 178, 233, 234, 423
BmrFI CCNGG 5 cut(s) 174, 289, 426, 549, 948
BmsI GCATC 3 cut(s) 57, 391, 922
BplI GAGNNNNNCTC 4 cut(s) 332, 364, 379, 411
BpmI CTGGAG 2 cut(s) 71, 570
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 673
BpuMI CCSGG 2 cut(s) 426, 948
BsaHI GRCGYC 1 cut(s) 157
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 172, 408, 947
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 65, 112, 229, 554, 861
Bse118I RCCGGY 2 cut(s) 268, 355
Bse1I ACTGG 2 cut(s) 88, 280
Bse3DI GCAATG 2 cut(s) 855, 935
BseBI CCWGG 3 cut(s) 174, 289, 549
BseDI CCNNGG 3 cut(s) 172, 408, 947
BseGI GGATG 2 cut(s) 48, 219
BseLI CCNNNNNNNGG 6 cut(s) 64, 65, 112, 229, 554, 861
BseMI GCAATG 2 cut(s) 855, 935
BseMII CTCAG 2 cut(s) 77, 330
BseNI ACTGG 2 cut(s) 88, 280
BseRI GAGGAG 2 cut(s) 92, 152
BseX3I CGGCCG 1 cut(s) 405
BseXI GCAGC 2 cut(s) 350, 467
BseYI CCCAGC 2 cut(s) 58, 860
Bsh1285I CGRYCG 1 cut(s) 408
BshFI GGCC 5 cut(s) 177, 195, 407, 846, 924
BshNI GGYRCC 2 cut(s) 156, 421
BsiEI CGRYCG 1 cut(s) 408
BsiSI CCGG 4 cut(s) 269, 356, 425, 947
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 6 cut(s) 64, 65, 112, 229, 554, 861
BsmAI GTCTC 3 cut(s) 20, 689, 739
BsmFI GGGAC 1 cut(s) 218
BsnI GGCC 5 cut(s) 177, 195, 407, 846, 924
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 774
Bsp143I GATC 1 cut(s) 810
BspACI CCGC 6 cut(s) 305, 344, 353, 404, 843, 871
BspANI GGCC 5 cut(s) 177, 195, 407, 846, 924
BspCNI CTCAG 2 cut(s) 76, 331
BspHI TCATGA 1 cut(s) 384
BspLI GGNNCC 6 cut(s) 7, 158, 178, 233, 234, 423
BspT107I GGYRCC 2 cut(s) 156, 421
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 2 cut(s) 855, 935
BsrFI RCCGGY 2 cut(s) 268, 355
BsrI ACTGG 2 cut(s) 88, 280
BssAI RCCGGY 2 cut(s) 268, 355
BssECI CCNNGG 3 cut(s) 172, 408, 947
BssMI GATC 1 cut(s) 810
BssNAI GTATAC 1 cut(s) 820
BssNI GRCGYC 1 cut(s) 157
Bst1107I GTATAC 1 cut(s) 820
Bst2UI CCWGG 3 cut(s) 174, 289, 549
Bst4CI ACNGT 3 cut(s) 80, 276, 817
Bst6I CTCTTC 2 cut(s) 687, 947
BstACI GRCGYC 1 cut(s) 157
BstC8I GCNNGC 2 cut(s) 770, 841
BstDEI CTNAG 3 cut(s) 63, 339, 969
BstF5I GGATG 2 cut(s) 48, 219
BstH2I RGCGCY 2 cut(s) 160, 591
BstHHI GCGC 2 cut(s) 159, 590
BstKTI GATC 1 cut(s) 813
BstMAI GTCTC 3 cut(s) 20, 689, 739
BstMBI GATC 1 cut(s) 810
BstMCI CGRYCG 1 cut(s) 408
BstMWI GCNNNNNNNGC 3 cut(s) 455, 587, 665
BstNI CCWGG 3 cut(s) 174, 289, 549
BstNSI RCATGY 5 cut(s) 41, 568, 758, 797, 826
BstSCI CCNGG 5 cut(s) 172, 287, 424, 547, 946
BstV1I GCAGC 2 cut(s) 350, 467
BstXI CCANNNNNNTGG 1 cut(s) 759
BstZ17I GTATAC 1 cut(s) 820
BstZI CGGCCG 1 cut(s) 405
BsuRI GGCC 5 cut(s) 177, 195, 407, 846, 924
BtsCI GGATG 2 cut(s) 48, 219
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 2 cut(s) 770, 841
CciI TCATGA 1 cut(s) 384
CfoI GCGC 2 cut(s) 159, 590
Cfr10I RCCGGY 2 cut(s) 268, 355
Cfr13I GGNCC 2 cut(s) 176, 232
Csp6I GTAC 1 cut(s) 295
CviAII CATG 9 cut(s) 38, 385, 506, 565, 584, 755, 794, 823, 914
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 3 cut(s) 63, 339, 969
DinI GGCGCC 1 cut(s) 158
DpnI GATC 1 cut(s) 812
DpnII GATC 1 cut(s) 810
DrdI GACNNNNNNGTC 1 cut(s) 731
DseDI GACNNNNNNGTC 1 cut(s) 731
EaeI YGGCCR 2 cut(s) 405, 922
EagI CGGCCG 1 cut(s) 405
Eam1104I CTCTTC 2 cut(s) 687, 947
EarI CTCTTC 2 cut(s) 687, 947
EciI GGCGGA 1 cut(s) 359
EclXI CGGCCG 1 cut(s) 405
Eco24I GRGCYC 1 cut(s) 774
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 232
Eco52I CGGCCG 1 cut(s) 405
Eco57I CTGAAG 3 cut(s) 295, 471, 614
EcoO109I RGGNCCY 2 cut(s) 176, 232
EcoRII CCWGG 3 cut(s) 172, 287, 547
EcoT22I ATGCAT 2 cut(s) 50, 937
EcoT38I GRGCYC 1 cut(s) 774
EgeI GGCGCC 1 cut(s) 158
EheI GGCGCC 1 cut(s) 158
FaeI CATG 9 cut(s) 41, 388, 509, 568, 587, 758, 797, 826, 917
FaqI GGGAC 1 cut(s) 218
FatI CATG 9 cut(s) 37, 384, 505, 564, 583, 754, 793, 822, 913
FauI CCCGC 1 cut(s) 312
FauNDI CATATG 1 cut(s) 730
FblI GTMKAC 1 cut(s) 819
Fnu4HI GCNGC 6 cut(s) 353, 364, 405, 456, 844, 872
FokI GGATG 2 cut(s) 35, 206
FriOI GRGCYC 1 cut(s) 774
Fsp4HI GCNGC 6 cut(s) 353, 364, 405, 456, 844, 872
FspBI CTAG 2 cut(s) 618, 660
GlaI GCGC 2 cut(s) 158, 589
GluI GCNGC 6 cut(s) 353, 364, 405, 456, 844, 872
GsaI CCCAGC 2 cut(s) 62, 864
GsuI CTGGAG 2 cut(s) 71, 570
HaeII RGCGCY 2 cut(s) 160, 591
HaeIII GGCC 5 cut(s) 177, 195, 407, 846, 924
HapII CCGG 4 cut(s) 269, 356, 425, 947
HhaI GCGC 2 cut(s) 159, 590
Hin1I GRCGYC 1 cut(s) 157
Hin1II CATG 9 cut(s) 41, 388, 509, 568, 587, 758, 797, 826, 917
Hin6I GCGC 2 cut(s) 157, 588
HinP1I GCGC 2 cut(s) 157, 588
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 971
HinfI GANTC 2 cut(s) 347, 381
HpaII CCGG 4 cut(s) 269, 356, 425, 947
HphI GGTGA 4 cut(s) 118, 370, 500, 728
Hpy166II GTNNAC 4 cut(s) 136, 285, 596, 820
Hpy188I TCNGA 4 cut(s) 340, 376, 633, 902
Hpy188III TCNNGA 5 cut(s) 214, 385, 398, 437, 800
Hpy8I GTNNAC 4 cut(s) 136, 285, 596, 820
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 7 cut(s) 139, 210, 552, 638, 695, 707, 880
HpyCH4III ACNGT 3 cut(s) 80, 276, 817
HpyCH4V TGCA 5 cut(s) 48, 564, 668, 935, 940
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 587, 665
HpyF3I CTNAG 3 cut(s) 63, 339, 969
Hsp92I GRCGYC 1 cut(s) 157
Hsp92II CATG 9 cut(s) 41, 388, 509, 568, 587, 758, 797, 826, 917
HspAI GCGC 2 cut(s) 157, 588
KasI GGCGCC 1 cut(s) 156
KflI GGGWCCC 1 cut(s) 232
Kzo9I GATC 1 cut(s) 810
LmnI GCTCC 3 cut(s) 90, 105, 316
Lsp1109I GCAGC 2 cut(s) 350, 467
LweI GCATC 3 cut(s) 57, 391, 922
MaeI CTAG 2 cut(s) 618, 660
MaeIII GTNAC 3 cut(s) 33, 68, 428
MalI GATC 1 cut(s) 812
MboI GATC 1 cut(s) 810
MboII GAAGA 3 cut(s) 491, 704, 964
MhlI GDGCHC 1 cut(s) 774
MlsI TGGCCA 1 cut(s) 924
MluCI AATT 4 cut(s) 250, 638, 776, 942
MluNI TGGCCA 1 cut(s) 924
Mly113I GGCGCC 1 cut(s) 157
MlyI GAGTC 2 cut(s) 341, 390
Mox20I TGGCCA 1 cut(s) 924
Mph1103I ATGCAT 2 cut(s) 50, 937
MscI TGGCCA 1 cut(s) 924
MseI TTAA 1 cut(s) 976
MslI CAYNNNNRTG 2 cut(s) 757, 930
Msp20I TGGCCA 1 cut(s) 924
MspI CCGG 4 cut(s) 269, 356, 425, 947
MspR9I CCNGG 5 cut(s) 174, 289, 426, 549, 948
MvaI CCWGG 3 cut(s) 174, 289, 549
MwoI GCNNNNNNNGC 3 cut(s) 455, 587, 665
NarI GGCGCC 1 cut(s) 157
NciI CCSGG 2 cut(s) 426, 948
NdeI CATATG 1 cut(s) 730
NdeII GATC 1 cut(s) 810
NlaIII CATG 9 cut(s) 41, 388, 509, 568, 587, 758, 797, 826, 917
NlaIV GGNNCC 6 cut(s) 7, 158, 178, 233, 234, 423
NmeAIII GCCGAG 1 cut(s) 433
NmuCI GTSAC 2 cut(s) 33, 68
NsiI ATGCAT 2 cut(s) 50, 937
NspI RCATGY 5 cut(s) 41, 568, 758, 797, 826
PagI TCATGA 1 cut(s) 384
PciI ACATGT 3 cut(s) 754, 793, 822
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PflFI GACNNNGTC 1 cut(s) 31
PkrI GCNGC 6 cut(s) 354, 365, 406, 457, 845, 873
PleI GAGTC 2 cut(s) 341, 389
PluTI GGCGCC 1 cut(s) 160
PpsI GAGTC 2 cut(s) 341, 389
PpuMI RGGWCCY 1 cut(s) 232
PscI ACATGT 3 cut(s) 754, 793, 822
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 3 cut(s) 172, 287, 547
PspFI CCCAGC 2 cut(s) 58, 860
PspGI CCWGG 3 cut(s) 172, 287, 547
PspN4I GGNNCC 6 cut(s) 7, 158, 178, 233, 234, 423
PspPI GGNCC 2 cut(s) 176, 232
PspPPI RGGWCCY 1 cut(s) 232
PsyI GACNNNGTC 1 cut(s) 31
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
RseI CAYNNNNRTG 2 cut(s) 757, 930
SaqAI TTAA 1 cut(s) 976
SatI GCNGC 6 cut(s) 353, 364, 405, 456, 844, 872
Sau3AI GATC 1 cut(s) 810
Sau96I GGNCC 2 cut(s) 176, 232
ScaI AGTACT 1 cut(s) 296
SchI GAGTC 2 cut(s) 341, 390
ScrFI CCNGG 5 cut(s) 174, 289, 426, 549, 948
SduI GDGCHC 1 cut(s) 774
SfaNI GCATC 3 cut(s) 57, 391, 922
SfoI GGCGCC 1 cut(s) 158
SgrAI CRCCGGYG 1 cut(s) 355
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 2 cut(s) 757, 930
SmlI CTYRAG 1 cut(s) 652
SmoI CTYRAG 1 cut(s) 652
Sse9I AATT 4 cut(s) 250, 638, 776, 942
SsiI CCGC 6 cut(s) 305, 344, 353, 404, 843, 871
SspDI GGCGCC 1 cut(s) 156
SspMI CTAG 2 cut(s) 618, 660
StyD4I CCNGG 5 cut(s) 172, 287, 424, 547, 946
TaaI ACNGT 3 cut(s) 80, 276, 817
TaqI TCGA 1 cut(s) 189
TasI AATT 4 cut(s) 250, 638, 776, 942
TatI WGTACW 1 cut(s) 294
TauI GCSGC 4 cut(s) 355, 407, 846, 874
Tru1I TTAA 1 cut(s) 976
Tru9I TTAA 1 cut(s) 976
TscAI CASTG 1 cut(s) 279
TseFI GTSAC 2 cut(s) 33, 68
TseI GCWGC 2 cut(s) 363, 455
Tsp45I GTSAC 2 cut(s) 33, 68
TspDTI ATGAA 1 cut(s) 846
TspGWI ACGGA 1 cut(s) 560
TspRI CASTG 1 cut(s) 279
Tth111I GACNNNGTC 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 2 cut(s) 250, 942
XceI RCATGY 5 cut(s) 41, 568, 758, 797, 826
XmiI GTMKAC 1 cut(s) 819
XspI CTAG 2 cut(s) 618, 660
ZrmI AGTACT 1 cut(s) 296
Zsp2I ATGCAT 2 cut(s) 50, 937
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.