Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

12785136 .. 12786854

Gene Structure 1719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20572.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGTTGAAACTGAAAGCAATACTCAGCCTCATGTTGTTTGTGTTCCATATCCATCACAAGGCCATATTAGCCCTATGATGCAACTAGCCAAGCTTCTAAACTCAAGAGGCTTCCACATAACCTTTGTCAACACTGAGTTTAACCACAGGCGCTTAGTCAGGTCCAGAGGGCACACATCATCCCTTAGCCACCTGCCGGATTTTCGGTTTGAAACCATACCAGATGGACTGCCACCAAGTGACAAAGATGCAACACAAGATGTTCCAGCACTGAGTGATTCCACCAGAAATAACTGTCTTGCTCCATTCAAAGAGCTACTGATCAAGCTTAACAAGTTGTCTGAAGTGCCCCCGGTTAGCTGCGTAATCTCAGATGGGGTTATGGGTTTTGGGAGGGAGGCTGCTGTGGAATTGGGTATTCCAGAGGTTCAGTTTTGGACTGCCTCTGCTTGTGGCTTCATGGGTTACTTGCAGTATGGTGAACTTCTTAGAAGAGGCATGGCTCCATTCAAAGATGAAGAATTTAAGAGTGATGATCCACTACTTGATACAACAATTGATTGGATCCCGGGCTTGAAAAATGTCAGGCTCAAAGACATTCCTTACCATCCTAACAAAATAATGTTCGATTTCATGGGATCAGAAGCACAAAATTGCTTGAAATCTTCTGCAATCATCTTCAACACCTTCGACGAATTCGAACATGAAGTGTTAGAAGCAATCTCATTGACTTTCCCCAACATTTACACAATAGGTCCTAGGGGTGGGCATGGGACGGGATGGGACGGGATTGAGGTCATCCCACGTCCCGTCCCGGTTGTTACACATGGGACGGGATCGGGACGGGCCTTACATTTTTCAGACTCGATCCCGCCGGGCCTAATCCCGGATGGGACGGGACGGGATCGGGATGGGACGGGCCCAATCCCGGCCATCCTGCATCAGTTTCTTTTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

320

Amino Acids

35.29

Weight (kDa)

5.52

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	12 - 138	7.2e-10	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	201
AciI	CCGC	1 cut(s)	872
AclWI	GGATC	7 cut(s)	530, 559, 572, 646, 844, 862, 912
AcoI	YGGCCR	1 cut(s)	930
AcsI	RAATTY	2 cut(s)	521, 695
AcuI	CTGAAG	1 cut(s)	363
AdeI	CACNNNGTG	2 cut(s)	239, 275
AfiI	CCNNNNNNNGG	5 cut(s)	59, 196, 764, 886, 928
AgsI	TTSAA	7 cut(s)	8, 212, 310, 511, 577, 661, 682
AjiI	CACGTC	1 cut(s)	806
AluBI	AGCT	4 cut(s)	94, 316, 328, 360
AluI	AGCT	4 cut(s)	94, 316, 328, 360
AlwI	GGATC	7 cut(s)	530, 559, 572, 646, 844, 862, 912
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	5 cut(s)	61, 846, 877, 919, 930
ApaI	GGGCCC	1 cut(s)	923
ApeKI	GCWGC	2 cut(s)	360, 401
ApoI	RAATTY	2 cut(s)	521, 695
AspA2I	CCTAGG	1 cut(s)	758
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	6 cut(s)	162, 755, 846, 877, 919, 920
AsuC2I	CCSGG	7 cut(s)	353, 569, 570, 815, 876, 887, 929
AsuHPI	GGTGA	1 cut(s)	491
AsuII	TTCGAA	1 cut(s)	699
AvaI	CYCGRG	1 cut(s)	568
AvaII	GGWCC	2 cut(s)	162, 755
AvrII	CCTAGG	1 cut(s)	758
BaeGI	GKGCMC	3 cut(s)	174, 351, 923
BamHI	GGATCC	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	923
BbvI	GCAGC	2 cut(s)	347, 388
BccI	CCATC	8 cut(s)	61, 218, 368, 615, 774, 884, 905, 941
BclI	TGATCA	1 cut(s)	321
BcnI	CCSGG	7 cut(s)	353, 569, 570, 815, 876, 887, 929
BfaI	CTAG	3 cut(s)	86, 759, 958
BfoI	RGCGCY	1 cut(s)	154
BfuAI	ACCTGC	1 cut(s)	201
BisI	GCNGC	2 cut(s)	361, 402
BlnI	CCTAGG	1 cut(s)	758
BlsI	GCNGC	2 cut(s)	362, 403
Bme1390I	CCNGG	7 cut(s)	353, 569, 570, 815, 876, 887, 929
Bme18I	GGWCC	2 cut(s)	162, 755
BmeT110I	CYCGRG	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	806
BmgT120I	GGNCC	6 cut(s)	162, 755, 846, 877, 919, 920
BmiI	GGNNCC	3 cut(s)	504, 566, 921
BmrFI	CCNGG	7 cut(s)	353, 569, 570, 815, 876, 887, 929
BmsI	GCATC	3 cut(s)	69, 238, 949
Bpu10I	CCTNAGC	1 cut(s)	185
Bpu14I	TTCGAA	1 cut(s)	699
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	7 cut(s)	353, 569, 570, 815, 876, 887, 929
BsaJI	CCNNGG	3 cut(s)	351, 568, 758
Bsc4I	CCNNNNNNNGG	5 cut(s)	59, 196, 764, 886, 928
BseDI	CCNNGG	3 cut(s)	351, 568, 758
BseGI	GGATG	7 cut(s)	179, 607, 785, 798, 895, 916, 933
BseLI	CCNNNNNNNGG	5 cut(s)	59, 196, 764, 886, 928
BseMII	CTCAG	4 cut(s)	38, 126, 263, 384
BseSI	GKGCMC	3 cut(s)	174, 351, 923
BseXI	GCAGC	2 cut(s)	347, 388
BshFI	GGCC	5 cut(s)	63, 848, 879, 921, 932
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	7 cut(s)	197, 353, 569, 815, 875, 887, 929
BslFI	GGGAC	9 cut(s)	787, 792, 797, 797, 844, 855, 907, 912, 928
BslI	CCNNNNNNNGG	5 cut(s)	59, 196, 764, 886, 928
BsmFI	GGGAC	9 cut(s)	787, 792, 797, 797, 844, 855, 907, 912, 928
BsnI	GGCC	5 cut(s)	63, 848, 879, 921, 932
BsoBI	CYCGRG	1 cut(s)	568
Bsp119I	TTCGAA	1 cut(s)	699
Bsp120I	GGGCCC	1 cut(s)	919
Bsp1286I	GDGCHC	3 cut(s)	174, 351, 923
Bsp143I	GATC	7 cut(s)	321, 535, 564, 638, 836, 867, 904
BspACI	CCGC	1 cut(s)	872
BspANI	GGCC	5 cut(s)	63, 848, 879, 921, 932
BspCNI	CTCAG	4 cut(s)	37, 127, 264, 383
BspLI	GGNNCC	3 cut(s)	504, 566, 921
BspMI	ACCTGC	1 cut(s)	201
BspPI	GGATC	7 cut(s)	530, 559, 572, 646, 844, 862, 912
BspT104I	TTCGAA	1 cut(s)	699
BssECI	CCNNGG	3 cut(s)	351, 568, 758
BssMI	GATC	7 cut(s)	321, 535, 564, 638, 836, 867, 904
BssT1I	CCWWGG	1 cut(s)	758
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	487
BstBI	TTCGAA	1 cut(s)	699
BstDEI	CTNAG	7 cut(s)	24, 135, 154, 185, 272, 370, 488
BstF5I	GGATG	7 cut(s)	179, 607, 785, 798, 895, 916, 933
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	7 cut(s)	324, 538, 567, 641, 839, 870, 907
BstMBI	GATC	7 cut(s)	321, 535, 564, 638, 836, 867, 904
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstSCI	CCNGG	7 cut(s)	351, 567, 568, 813, 874, 885, 927
BstSLI	GKGCMC	3 cut(s)	174, 351, 923
BstV1I	GCAGC	2 cut(s)	347, 388
BstX2I	RGATCY	1 cut(s)	564
BstYI	RGATCY	1 cut(s)	564
BsuRI	GGCC	5 cut(s)	63, 848, 879, 921, 932
BtrI	CACGTC	1 cut(s)	806
BtsCI	GGATG	7 cut(s)	179, 607, 785, 798, 895, 916, 933
BtsIMutI	CAGTG	2 cut(s)	132, 269
BveI	ACCTGC	1 cut(s)	201
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	6 cut(s)	162, 755, 846, 877, 919, 920
Cfr9I	CCCGGG	1 cut(s)	568
CviAII	CATG	7 cut(s)	32, 460, 499, 634, 704, 770, 827
DdeI	CTNAG	7 cut(s)	24, 135, 154, 185, 272, 370, 488
DpnI	GATC	7 cut(s)	323, 537, 566, 640, 838, 869, 906
DpnII	GATC	7 cut(s)	321, 535, 564, 638, 836, 867, 904
DraIII	CACNNNGTG	2 cut(s)	239, 275
EaeI	YGGCCR	1 cut(s)	930
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	758
Eco24I	GRGCYC	1 cut(s)	923
Eco47I	GGWCC	2 cut(s)	162, 755
Eco57I	CTGAAG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	568
EcoO109I	RGGNCCY	1 cut(s)	755
EcoRI	GAATTC	1 cut(s)	695
EcoT14I	CCWWGG	1 cut(s)	758
EcoT38I	GRGCYC	1 cut(s)	923
ErhI	CCWWGG	1 cut(s)	758
FaeI	CATG	7 cut(s)	35, 463, 502, 637, 707, 773, 830
FaqI	GGGAC	9 cut(s)	787, 792, 797, 797, 844, 855, 907, 912, 928
FatI	CATG	7 cut(s)	31, 459, 498, 633, 703, 769, 826
FauI	CCCGC	1 cut(s)	879
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	361, 402
FokI	GGATG	7 cut(s)	166, 594, 785, 792, 902, 920, 923
FriOI	GRGCYC	1 cut(s)	923
Fsp4HI	GCNGC	2 cut(s)	361, 402
FspBI	CTAG	3 cut(s)	86, 759, 958
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	2 cut(s)	361, 402
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	5 cut(s)	63, 848, 879, 921, 932
HapII	CCGG	7 cut(s)	197, 353, 569, 815, 875, 887, 929
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	7 cut(s)	35, 463, 502, 637, 707, 773, 830
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	2 cut(s)	92, 326
HinfI	GANTC	2 cut(s)	278, 863
HpaII	CCGG	7 cut(s)	197, 353, 569, 815, 875, 887, 929
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	130, 482
Hpy188I	TCNGA	4 cut(s)	343, 373, 643, 862
Hpy188III	TCNNGA	5 cut(s)	105, 165, 422, 840, 908
Hpy8I	GTNNAC	2 cut(s)	130, 482
Hpy99I	CGWCG	1 cut(s)	695
HpyAV	CCTTC	1 cut(s)	697
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	805
HpyCH4V	TGCA	5 cut(s)	82, 251, 472, 671, 940
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	7 cut(s)	24, 135, 154, 185, 272, 370, 488
HpySE526I	ACGT	1 cut(s)	805
Hsp92II	CATG	7 cut(s)	35, 463, 502, 637, 707, 773, 830
HspAI	GCGC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	7 cut(s)	321, 535, 564, 638, 836, 867, 904
LmnI	GCTCC	2 cut(s)	307, 508
Lsp1109I	GCAGC	2 cut(s)	347, 388
LweI	GCATC	3 cut(s)	69, 238, 949
MaeI	CTAG	3 cut(s)	86, 759, 958
MaeII	ACGT	1 cut(s)	805
MaeIII	GTNAC	3 cut(s)	239, 464, 820
MalI	GATC	7 cut(s)	323, 537, 566, 640, 838, 869, 906
MboI	GATC	7 cut(s)	321, 535, 564, 638, 836, 867, 904
MboII	GAAGA	5 cut(s)	504, 530, 657, 670, 946
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	1 cut(s)	564
MhlI	GDGCHC	3 cut(s)	174, 351, 923
MluCI	AATT	5 cut(s)	410, 521, 555, 652, 695
MlyI	GAGTC	1 cut(s)	857
MnlI	CCTC	9 cut(s)	39, 101, 161, 387, 391, 418, 454, 488, 787
MseI	TTAA	3 cut(s)	141, 330, 525
MspI	CCGG	7 cut(s)	197, 353, 569, 815, 875, 887, 929
MspR9I	CCNGG	7 cut(s)	353, 569, 570, 815, 876, 887, 929
MunI	CAATTG	1 cut(s)	555
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	7 cut(s)	353, 569, 570, 815, 876, 887, 929
NdeII	GATC	7 cut(s)	321, 535, 564, 638, 836, 867, 904
NlaIII	CATG	7 cut(s)	35, 463, 502, 637, 707, 773, 830
NlaIV	GGNNCC	3 cut(s)	504, 566, 921
NmuCI	GTSAC	1 cut(s)	239
NspV	TTCGAA	1 cut(s)	699
PaqCI	CACCTGC	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PfeI	GAWTC	1 cut(s)	278
PfoI	TCCNGGA	1 cut(s)	885
PkrI	GCNGC	2 cut(s)	362, 403
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
PpuMI	RGGWCCY	1 cut(s)	755
Psp5II	RGGWCCY	1 cut(s)	755
PspN4I	GGNNCC	3 cut(s)	504, 566, 921
PspOMI	GGGCCC	1 cut(s)	919
PspPI	GGNCC	6 cut(s)	162, 755, 846, 877, 919, 920
PspPPI	RGGWCCY	1 cut(s)	755
PsuI	RGATCY	1 cut(s)	564
SaqAI	TTAA	3 cut(s)	141, 330, 525
SatI	GCNGC	2 cut(s)	361, 402
Sau3AI	GATC	7 cut(s)	321, 535, 564, 638, 836, 867, 904
Sau96I	GGNCC	6 cut(s)	162, 755, 846, 877, 919, 920
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	7 cut(s)	353, 569, 570, 815, 876, 887, 929
SduI	GDGCHC	3 cut(s)	174, 351, 923
SfaNI	GCATC	3 cut(s)	69, 238, 949
SfuI	TTCGAA	1 cut(s)	699
SinI	GGWCC	2 cut(s)	162, 755
SmaI	CCCGGG	1 cut(s)	570
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	5 cut(s)	410, 521, 555, 652, 695
SsiI	CCGC	1 cut(s)	872
SspMI	CTAG	3 cut(s)	86, 759, 958
StyD4I	CCNGG	7 cut(s)	351, 567, 568, 813, 874, 885, 927
StyI	CCWWGG	1 cut(s)	758
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	808
TaqI	TCGA	4 cut(s)	627, 690, 699, 866
TasI	AATT	5 cut(s)	410, 521, 555, 652, 695
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	3 cut(s)	141, 330, 525
Tru9I	TTAA	3 cut(s)	141, 330, 525
TscAI	CASTG	2 cut(s)	139, 276
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	2 cut(s)	360, 401
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	4 cut(s)	448, 531, 622, 720
TspMI	CCCGGG	1 cut(s)	568
TspRI	CASTG	2 cut(s)	139, 276
VpaK11BI	GGWCC	2 cut(s)	162, 755
XapI	RAATTY	2 cut(s)	521, 695
XmaI	CCCGGG	1 cut(s)	568
XmaJI	CCTAGG	1 cut(s)	758
XspI	CTAG	3 cut(s)	86, 759, 958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.