Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

41337925 .. 41338713

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGCTTCTAAGAAGCCTCATGCTGTGTGTATTCCAGCTCCATCTCTAGGCCACATAAAGGCAGTGCTTAAACTAGCAAAACTCCTACACCATGAAGGCTTTCATATAACCTTTGTCAACACAGAGTCCTTTCACAAGCGTTATCTTAAATCTCTAGGCCCCAACTCCTTAGATGGTCTCCCCGATTTTCAGTTTGAAACCATTCCGGATGGCTTACCAGATTCTGATGCTGATCCCATGAGCTTGCTTTGTGAAAACAAACATATGAAAACTTTGTTGCCTCCCTTTCGCGGCCTCCTCACAAAACTCAACAATGATTTTACTAATCCTCCAGTGACTTGCATTGTTTCAGATGGTTTCTTGTGGATGTTCACCATTGCAGCTGCTCAAGAAATTGGGGTCCCCATAGTGCTCTTCGAAACTATTGTTGCATCAACGTTCATGGCATTCAAACAGTTTCGCACTTTGGTCCAAAAAGGGCTTGTACCACTCAAAGATACTTCACCTCCTTCTGGTGAGCAGCTATGCTTGACGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

179

Amino Acids

19.74

Weight (kDa)

7.04

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	291
AccIII	TCCGGA	1 cut(s)	205
AciI	CCGC	1 cut(s)	291
AclI	AACGTT	1 cut(s)	437
AclWI	GGATC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	486
AfiI	CCNNNNNNNGG	4 cut(s)	47, 58, 290, 512
AgsI	TTSAA	2 cut(s)	197, 451
AluBI	AGCT	4 cut(s)	38, 243, 383, 523
AluI	AGCT	4 cut(s)	38, 243, 383, 523
Alw21I	GWGCWC	1 cut(s)	414
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	224
Aor13HI	TCCGGA	1 cut(s)	205
AoxI	GGCC	3 cut(s)	49, 157, 292
ApeKI	GCWGC	3 cut(s)	380, 383, 520
Asp700I	GAANNNNTTC	2 cut(s)	99, 201
AspS9I	GGNCC	3 cut(s)	158, 400, 469
AsuHPI	GGTGA	3 cut(s)	364, 495, 527
AsuII	TTCGAA	1 cut(s)	417
AvaII	GGWCC	2 cut(s)	400, 469
Bbv12I	GWGCWC	1 cut(s)	414
BbvI	GCAGC	3 cut(s)	370, 392, 532
BccI	CCATC	4 cut(s)	49, 167, 203, 347
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	3 cut(s)	47, 74, 155
BisI	GCNGC	4 cut(s)	292, 381, 384, 521
BlsI	GCNGC	4 cut(s)	293, 382, 385, 522
Bme18I	GGWCC	2 cut(s)	400, 469
BmgT120I	GGNCC	3 cut(s)	158, 400, 469
BmiI	GGNNCC	3 cut(s)	160, 401, 402
BmsI	GCATC	2 cut(s)	217, 440
BpmI	CTGGAG	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	372
BsaBI	GATNNNNATC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	205
BsaXI	ACNNNNNCTCC	4 cut(s)	313, 343, 490, 520
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 58, 290, 512
Bse1I	ACTGG	1 cut(s)	332
Bse3DI	GCAATG	1 cut(s)	375
Bse8I	GATNNNNATC	1 cut(s)	231
BseAI	TCCGGA	1 cut(s)	205
BseGI	GGATG	2 cut(s)	214, 372
BseJI	GATNNNNATC	1 cut(s)	231
BseLI	CCNNNNNNNGG	4 cut(s)	47, 58, 290, 512
BseMI	GCAATG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	3 cut(s)	370, 392, 532
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	3 cut(s)	51, 159, 294
BsiHKAI	GWGCWC	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	4 cut(s)	47, 58, 290, 512
BsmAI	GTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	3 cut(s)	51, 159, 294
Bso31I	GGTCTC	1 cut(s)	182
Bsp119I	TTCGAA	1 cut(s)	417
Bsp1286I	GDGCHC	1 cut(s)	414
Bsp13I	TCCGGA	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	3 cut(s)	51, 159, 294
BspEI	TCCGGA	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	160, 401, 402
BspPI	GGATC	1 cut(s)	227
BspQI	GCTCTTC	1 cut(s)	419
BspT104I	TTCGAA	1 cut(s)	417
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	332
BssMI	GATC	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	456
Bst6I	CTCTTC	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	417
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	2 cut(s)	9, 169
BstF5I	GGATG	2 cut(s)	214, 372
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	1 cut(s)	232
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	370, 392, 532
BsuRI	GGCC	3 cut(s)	51, 159, 294
BtsCI	GGATG	2 cut(s)	214, 372
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 339
Cac8I	GCNNGC	1 cut(s)	245
CaiI	CAGNNNCTG	1 cut(s)	224
Cfr13I	GGNCC	3 cut(s)	158, 400, 469
Csp6I	GTAC	1 cut(s)	485
CviAII	CATG	4 cut(s)	20, 92, 238, 442
CviQI	GTAC	1 cut(s)	485
DdeI	CTNAG	2 cut(s)	9, 169
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco31I	GGTCTC	1 cut(s)	182
Eco47I	GGWCC	2 cut(s)	400, 469
EcoO109I	RGGNCCY	2 cut(s)	158, 400
FaeI	CATG	4 cut(s)	23, 95, 241, 445
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	4 cut(s)	19, 91, 237, 441
FauNDI	CATATG	1 cut(s)	264
Fnu4HI	GCNGC	4 cut(s)	292, 381, 384, 521
FokI	GGATG	2 cut(s)	221, 379
Fsp4HI	GCNGC	4 cut(s)	292, 381, 384, 521
FspBI	CTAG	3 cut(s)	47, 74, 155
GluI	GCNGC	4 cut(s)	292, 381, 384, 521
GsuI	CTGGAG	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	51, 159, 294
HapII	CCGG	1 cut(s)	206
Hin1II	CATG	4 cut(s)	23, 95, 241, 445
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	125, 221
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	3 cut(s)	364, 495, 527
Hpy166II	GTNNAC	2 cut(s)	118, 372
Hpy188I	TCNGA	2 cut(s)	226, 352
Hpy188III	TCNNGA	2 cut(s)	206, 389
Hpy8I	GTNNAC	2 cut(s)	118, 372
HpyAV	CCTTC	2 cut(s)	89, 519
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	3 cut(s)	342, 380, 431
HpyF3I	CTNAG	2 cut(s)	9, 169
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	4 cut(s)	23, 95, 241, 445
KflI	GGGWCCC	1 cut(s)	400
Kpn2I	TCCGGA	1 cut(s)	205
Kzo9I	GATC	1 cut(s)	232
LguI	GCTCTTC	1 cut(s)	419
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	5 cut(s)	48, 219, 231, 345, 498
Lsp1109I	GCAGC	3 cut(s)	370, 392, 532
LweI	GCATC	2 cut(s)	217, 440
MaeI	CTAG	3 cut(s)	47, 74, 155
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	1 cut(s)	334
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	1 cut(s)	406
MhlI	GDGCHC	1 cut(s)	414
MluCI	AATT	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	6 cut(s)	27, 291, 305, 308, 339, 516
MroI	TCCGGA	1 cut(s)	205
MroXI	GAANNNNTTC	2 cut(s)	99, 201
MseI	TTAA	2 cut(s)	69, 147
MspA1I	CMGCKG	1 cut(s)	383
MspI	CCGG	1 cut(s)	206
Mva1269I	GAATGC	1 cut(s)	446
MvnI	CGCG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	264
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	4 cut(s)	23, 95, 241, 445
NlaIV	GGNNCC	3 cut(s)	160, 401, 402
NmuCI	GTSAC	1 cut(s)	334
NspV	TTCGAA	1 cut(s)	417
PciSI	GCTCTTC	1 cut(s)	419
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	2 cut(s)	99, 201
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	4 cut(s)	293, 382, 385, 522
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
PpuMI	RGGWCCY	1 cut(s)	400
Psp1406I	AACGTT	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	400
PspN4I	GGNNCC	3 cut(s)	160, 401, 402
PspPI	GGNCC	3 cut(s)	158, 400, 469
PspPPI	RGGWCCY	1 cut(s)	400
PstNI	CAGNNNCTG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	383
RsaI	GTAC	1 cut(s)	486
RsaNI	GTAC	1 cut(s)	485
SapI	GCTCTTC	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	69, 147
SatI	GCNGC	4 cut(s)	292, 381, 384, 521
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	3 cut(s)	158, 400, 469
SchI	GAGTC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	414
SetI	ASST	7 cut(s)	40, 113, 245, 385, 440, 508, 525
SfaNI	GCATC	2 cut(s)	217, 440
SfuI	TTCGAA	1 cut(s)	417
SinI	GGWCC	2 cut(s)	400, 469
SmlI	CTYRAG	1 cut(s)	387
SmoI	CTYRAG	1 cut(s)	387
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	3 cut(s)	47, 74, 155
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	1 cut(s)	417
TasI	AATT	1 cut(s)	393
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	69, 147
Tru9I	TTAA	2 cut(s)	69, 147
TscAI	CASTG	2 cut(s)	69, 339
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	3 cut(s)	380, 383, 520
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	4 cut(s)	92, 108, 281, 430
TspRI	CASTG	2 cut(s)	69, 339
VpaK11BI	GGWCC	2 cut(s)	400, 469
XmnI	GAANNNNTTC	2 cut(s)	99, 201
XspI	CTAG	3 cut(s)	47, 74, 155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.