Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

66256866 .. 66257129

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG493300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGCAGAGACTAAGCCACATGCCGTATGCATCCCTTACCCAGCTCAGGGTCACATAAACCCTATGCTCAAGTTAGCCAAGCTACTCCACCACAAGGGCTTCCACATCACCTTCGTCAACACCGAGTACAACCACAAGCGCCTCCTCAACTCCCGAGGCCCCAACGCCCTCGACGGTCTCCCTTGTTTTCAGTTCAAGACCATTCCTGATGGGCTTCCTTCTACCGACTCAAATGCCACGCAGGACATACAGGCCCTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

87

Amino Acids

9.65

Weight (kDa)

8.54

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	9 - 47	4.5e-07	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	3 cut(s)	46, 47, 94
AgsI	TTSAA	1 cut(s)	196
AluBI	AGCT	2 cut(s)	44, 82
AluI	AGCT	2 cut(s)	44, 82
Alw26I	GTCTC	2 cut(s)	2, 182
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	2 cut(s)	157, 252
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	2 cut(s)	158, 253
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	153
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	8
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BcoDI	GTCTC	2 cut(s)	2, 182
BfaI	CTAG	1 cut(s)	262
BfoI	RGCGCY	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	2 cut(s)	158, 253
BmiI	GGNNCC	1 cut(s)	160
BmsI	GCATC	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 47, 94
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	3 cut(s)	46, 47, 94
BseMII	CTCAG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	134
BseYI	CCCAGC	1 cut(s)	40
BshFI	GGCC	2 cut(s)	159, 254
BsiHKCI	CYCGRG	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	46, 47, 94
BsmAI	GTCTC	2 cut(s)	2, 182
BsnI	GGCC	2 cut(s)	159, 254
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	1 cut(s)	153
BspANI	GGCC	2 cut(s)	159, 254
BspCNI	CTCAG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	176
BstDEI	CTNAG	2 cut(s)	12, 45
BstF5I	GGATG	1 cut(s)	30
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	2, 182
BstNSI	RCATGY	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	159, 254
BtsCI	GGATG	1 cut(s)	30
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	2 cut(s)	158, 253
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	1 cut(s)	20
CviJI	RGCY	8 cut(s)	16, 44, 77, 82, 99, 159, 214, 254
CviKI_1	RGCY	8 cut(s)	16, 44, 77, 82, 99, 159, 214, 254
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	2 cut(s)	12, 45
Eco31I	GGTCTC	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	153
EcoO109I	RGGNCCY	2 cut(s)	158, 253
EcoT22I	ATGCAT	1 cut(s)	32
FaeI	CATG	1 cut(s)	23
FaiI	YATR	5 cut(s)	21, 28, 56, 65, 248
FatI	CATG	1 cut(s)	19
FokI	GGATG	1 cut(s)	17
FspBI	CTAG	1 cut(s)	262
GlaI	GCGC	1 cut(s)	140
GsaI	CCCAGC	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	2 cut(s)	159, 254
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	227
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188III	TCNNGA	3 cut(s)	153, 196, 206
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	1 cut(s)	176
HpyAV	CCTTC	2 cut(s)	121, 228
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	12, 45
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	1 cut(s)	139
LpnPI	CCDG	5 cut(s)	32, 54, 219, 227, 236
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	50
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	4 cut(s)	149, 152, 155, 179
Mph1103I	ATGCAT	1 cut(s)	32
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
PspFI	CCCAGC	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	2 cut(s)	158, 253
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
Sau96I	GGNCC	2 cut(s)	158, 253
SchI	GAGTC	1 cut(s)	221
SetI	ASST	3 cut(s)	46, 84, 113
SfaNI	GCATC	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SspMI	CTAG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	171
TatI	WGTACW	1 cut(s)	126
TseFI	GTSAC	1 cut(s)	50
Tsp45I	GTSAC	1 cut(s)	50
XceI	RCATGY	1 cut(s)	23
XspI	CTAG	1 cut(s)	262
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.