Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

24558949 .. 24560400

Gene Structure 1452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018024

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGGTTCAACACAGTTAGGAGCCAAAAAACTCCATGCAGTCTGTGTCCCTTTCCCAGCACAAGGCCATGTTAACCCGCTAATGCAGTTAGCCAAGCTCCTGCACTCCAGGGGATTCCACATAACCTTTGTCAACACCGAGTTCAACCACCGGCGTTTAATCCGGTCCAGAGGTTCCGACTCTATCAAGGGACTACCGGACTTCCAATTCAAGACCATACCGGACGGGTTGCCACTTTCAGATAAAGATGCAACACAAGATGTCCCGGCTTTATGTGACTCCACTAGGAAAACATGTCTAGGTCCTTTTAAGGAGCTGGTGATGAAGATCAATTCATCATGTGCAGTGCCACAAGTTAGTTGTGTAATCACAGATGGTGTGATGGGATTTGGGAGGGAAGCTGCAAAGGACCTAGGGATTCCTGAGGTTCAGTTTTGGACCGCTTCTGCTTGTGGCTTCATGGCTTCATGTAATACAGCGAACTTGTTAAACGAGGCATTGTTCCATTCAAAGATGAAAGTTTCATGCAAGATGGTACACTGGATAAGCCAATTGATTGGATCCCAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

191

Amino Acids

20.69

Weight (kDa)

8.98

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	13 - 139	3.7e-10	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	77, 441
AclWI	GGATC	2 cut(s)	555, 568
AfaI	GTAC	1 cut(s)	537
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	4 cut(s)	9, 145, 211, 510
AjnI	CCWGG	2 cut(s)	107, 564
AluBI	AGCT	3 cut(s)	97, 316, 401
AluI	AGCT	3 cut(s)	97, 316, 401
AlwI	GGATC	2 cut(s)	555, 568
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	401
AspA2I	CCTAGG	1 cut(s)	412
AspS9I	GGNCC	4 cut(s)	165, 302, 409, 438
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	4 cut(s)	165, 302, 409, 438
AvrII	CCTAGG	1 cut(s)	412
AxyI	CCTNAGG	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	560
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	3 cut(s)	368, 376, 526
BciT130I	CCWGG	2 cut(s)	109, 566
BcnI	CCSGG	1 cut(s)	266
BfaI	CTAG	3 cut(s)	285, 299, 413
BisI	GCNGC	1 cut(s)	402
BlnI	CCTAGG	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	3 cut(s)	109, 266, 566
Bme18I	GGWCC	4 cut(s)	165, 302, 409, 438
BmgT120I	GGNCC	4 cut(s)	165, 302, 409, 438
BmiI	GGNNCC	3 cut(s)	22, 175, 562
BmrFI	CCNGG	3 cut(s)	109, 266, 566
BmsI	GCATC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	326
BsaJI	CCNNGG	3 cut(s)	108, 412, 564
BsaWI	WCCGGW	3 cut(s)	162, 196, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	1 cut(s)	545
Bse21I	CCTNAGG	1 cut(s)	423
Bse8I	GATNNNNATC	1 cut(s)	326
BseBI	CCWGG	2 cut(s)	109, 566
BseDI	CCNNGG	3 cut(s)	108, 412, 564
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	1 cut(s)	545
BseXI	GCAGC	1 cut(s)	388
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	2 cut(s)	86, 363
BshFI	GGCC	1 cut(s)	66
BsiSI	CCGG	5 cut(s)	151, 163, 197, 221, 266
BslFI	GGGAC	3 cut(s)	32, 204, 248
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmFI	GGGAC	3 cut(s)	32, 204, 248
BsnI	GGCC	1 cut(s)	66
Bsp143I	GATC	2 cut(s)	327, 560
BspACI	CCGC	2 cut(s)	77, 441
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	415
BspLI	GGNNCC	3 cut(s)	22, 175, 562
BspPI	GGATC	2 cut(s)	555, 568
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	1 cut(s)	545
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	3 cut(s)	108, 412, 564
BssMI	GATC	2 cut(s)	327, 560
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	109, 566
Bst4CI	ACNGT	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	423
BstKTI	GATC	2 cut(s)	330, 563
BstMBI	GATC	2 cut(s)	327, 560
BstNI	CCWGG	2 cut(s)	109, 566
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	3 cut(s)	107, 264, 564
BstV1I	GCAGC	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	560
BstXI	CCANNNNNNTGG	1 cut(s)	557
BstYI	RGATCY	1 cut(s)	560
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	2 cut(s)	351, 538
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	4 cut(s)	165, 302, 409, 438
Csp6I	GTAC	1 cut(s)	536
CviAII	CATG	8 cut(s)	35, 68, 294, 339, 460, 468, 525, 570
CviQI	GTAC	1 cut(s)	536
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	2 cut(s)	329, 562
DpnII	GATC	2 cut(s)	327, 560
Eco130I	CCWWGG	1 cut(s)	412
Eco47I	GGWCC	4 cut(s)	165, 302, 409, 438
Eco81I	CCTNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	2 cut(s)	302, 409
EcoRII	CCWGG	2 cut(s)	107, 564
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	8 cut(s)	38, 71, 297, 342, 463, 471, 528, 573
FaqI	GGGAC	3 cut(s)	32, 204, 248
FatI	CATG	8 cut(s)	34, 67, 293, 338, 459, 467, 524, 569
FauI	CCCGC	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	3 cut(s)	285, 299, 413
GluI	GCNGC	1 cut(s)	402
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	5 cut(s)	151, 163, 197, 221, 266
Hin1II	CATG	8 cut(s)	38, 71, 297, 342, 463, 471, 528, 573
HincII	GTYRAC	2 cut(s)	73, 133
HindII	GTYRAC	2 cut(s)	73, 133
HinfI	GANTC	4 cut(s)	114, 179, 278, 418
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	5 cut(s)	151, 163, 197, 221, 266
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	3 cut(s)	73, 133, 538
Hpy188I	TCNGA	2 cut(s)	178, 241
Hpy188III	TCNNGA	3 cut(s)	168, 211, 422
Hpy8I	GTNNAC	3 cut(s)	73, 133, 538
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	7 cut(s)	38, 85, 103, 251, 344, 404, 528
HpyF3I	CTNAG	1 cut(s)	423
Hsp92II	CATG	8 cut(s)	38, 71, 297, 342, 463, 471, 528, 573
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	327, 560
LmnI	GCTCC	3 cut(s)	20, 102, 313
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	3 cut(s)	285, 299, 413
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	2 cut(s)	329, 562
MboI	GATC	2 cut(s)	327, 560
MboII	GAAGA	1 cut(s)	337
MfeI	CAATTG	1 cut(s)	551
MflI	RGATCY	1 cut(s)	560
MluCI	AATT	3 cut(s)	206, 331, 551
MlyI	GAGTC	2 cut(s)	173, 272
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	4 cut(s)	164, 387, 418, 487
MseI	TTAA	4 cut(s)	72, 158, 309, 488
MspI	CCGG	5 cut(s)	151, 163, 197, 221, 266
MspR9I	CCNGG	3 cut(s)	109, 266, 566
MunI	CAATTG	1 cut(s)	551
MvaI	CCWGG	2 cut(s)	109, 566
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	2 cut(s)	327, 560
NlaIII	CATG	8 cut(s)	38, 71, 297, 342, 463, 471, 528, 573
NlaIV	GGNNCC	3 cut(s)	22, 175, 562
NmuCI	GTSAC	1 cut(s)	275
NspI	RCATGY	1 cut(s)	297
PciI	ACATGT	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	114, 418
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	2 cut(s)	173, 272
PpsI	GAGTC	2 cut(s)	173, 272
PpuMI	RGGWCCY	2 cut(s)	302, 409
PscI	ACATGT	1 cut(s)	293
Psp5II	RGGWCCY	2 cut(s)	302, 409
Psp6I	CCWGG	2 cut(s)	107, 564
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	2 cut(s)	107, 564
PspN4I	GGNNCC	3 cut(s)	22, 175, 562
PspPI	GGNCC	4 cut(s)	165, 302, 409, 438
PspPPI	RGGWCCY	2 cut(s)	302, 409
PsuI	RGATCY	1 cut(s)	560
RsaI	GTAC	1 cut(s)	537
RsaNI	GTAC	1 cut(s)	536
SaqAI	TTAA	4 cut(s)	72, 158, 309, 488
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	2 cut(s)	327, 560
Sau96I	GGNCC	4 cut(s)	165, 302, 409, 438
SchI	GAGTC	2 cut(s)	173, 272
ScrFI	CCNGG	3 cut(s)	109, 266, 566
SetI	ASST	8 cut(s)	99, 128, 175, 304, 318, 403, 414, 429
SfaNI	GCATC	1 cut(s)	238
SgrAI	CRCCGGYG	1 cut(s)	150
SinI	GGWCC	4 cut(s)	165, 302, 409, 438
Sse9I	AATT	3 cut(s)	206, 331, 551
SsiI	CCGC	2 cut(s)	77, 441
SspMI	CTAG	3 cut(s)	285, 299, 413
StyD4I	CCNGG	3 cut(s)	107, 264, 564
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	1 cut(s)	15
TasI	AATT	3 cut(s)	206, 331, 551
TfiI	GAWTC	2 cut(s)	114, 418
Tru1I	TTAA	4 cut(s)	72, 158, 309, 488
Tru9I	TTAA	4 cut(s)	72, 158, 309, 488
TscAI	CASTG	2 cut(s)	351, 545
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	6 cut(s)	324, 338, 448, 456, 513, 530
TspRI	CASTG	2 cut(s)	351, 545
VpaK11BI	GGWCC	4 cut(s)	165, 302, 409, 438
XceI	RCATGY	1 cut(s)	297
XmaJI	CCTAGG	1 cut(s)	412
XspI	CTAG	3 cut(s)	285, 299, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.