Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

25053710 .. 25054108

Gene Structure 399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48636

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGTTCAACTCAGTTAGGAGCCAAAAAACTCCATGCAGTCTGTGTCCCTTTCCCAGCACAAGGCCATGTTAACCCGCTAATGCAGTTAGCCAAGCTCCTGCACTCCAGGGGATTCCACATAACCTTTGTCAACACCGAGTTCAACCACCGGCGTTTAATCCGGTCCAGAGGTTCCGACTCTATAAAGGGACTACCGGACTTCCAATTCCAGACCATACCGGACGGGTTGCCACTTTCAGATAAAGACGCAACACAAGAGGTCCCGGCTTTATGTGACTCCACTAGGAAAACATGTCTAGGTCCTTTTAAGGAGCTGGTGATGAAGATCAATTCATCATGTGAAGTGCCACAAGTTAGTTGCACTACTAGCAAAACAACAATTACCCACGGATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

132

Amino Acids

14.51

Weight (kDa)

9.14

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	13 - 60	8.8e-10	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	2 cut(s)	9, 145
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	97, 316
AluI	AGCT	2 cut(s)	97, 316
AoxI	GGCC	1 cut(s)	64
AspS9I	GGNCC	3 cut(s)	165, 262, 302
AsuC2I	CCSGG	1 cut(s)	266
AsuHPI	GGTGA	1 cut(s)	331
AvaII	GGWCC	3 cut(s)	165, 262, 302
BciT130I	CCWGG	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	266
BfaI	CTAG	3 cut(s)	285, 299, 369
Bme1390I	CCNGG	2 cut(s)	109, 266
Bme18I	GGWCC	3 cut(s)	165, 262, 302
BmgT120I	GGNCC	3 cut(s)	165, 262, 302
BmiI	GGNNCC	3 cut(s)	22, 175, 264
BmrFI	CCNGG	2 cut(s)	109, 266
BpmI	CTGGAG	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	266
BsaBI	GATNNNNATC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	108, 388
BsaWI	WCCGGW	3 cut(s)	162, 196, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	108, 388
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	26
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	66
BsiSI	CCGG	5 cut(s)	151, 163, 197, 221, 266
BslFI	GGGAC	3 cut(s)	32, 204, 248
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmFI	GGGAC	3 cut(s)	32, 204, 248
BsnI	GGCC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	327
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	3 cut(s)	22, 175, 264
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	108, 388
BssMI	GATC	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	12
BstDSI	CCRYGG	1 cut(s)	388
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	1 cut(s)	369
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	107, 264
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	388
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	3 cut(s)	165, 262, 302
CseI	GACGC	1 cut(s)	257
CviAII	CATG	4 cut(s)	35, 68, 294, 339
CviJI	RGCY	6 cut(s)	23, 66, 92, 97, 269, 316
CviKI_1	RGCY	6 cut(s)	23, 66, 92, 97, 269, 316
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
Eco47I	GGWCC	3 cut(s)	165, 262, 302
EcoO109I	RGGNCCY	2 cut(s)	262, 302
EcoRII	CCWGG	1 cut(s)	107
FaeI	CATG	4 cut(s)	38, 71, 297, 342
FaiI	YATR	8 cut(s)	36, 69, 122, 185, 218, 274, 295, 340
FaqI	GGGAC	3 cut(s)	32, 204, 248
FatI	CATG	4 cut(s)	34, 67, 293, 338
FauI	CCCGC	1 cut(s)	84
FspBI	CTAG	3 cut(s)	285, 299, 369
GsaI	CCCAGC	1 cut(s)	59
GsuI	CTGGAG	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	5 cut(s)	151, 163, 197, 221, 266
HgaI	GACGC	1 cut(s)	257
Hin1II	CATG	4 cut(s)	38, 71, 297, 342
HincII	GTYRAC	2 cut(s)	73, 133
HindII	GTYRAC	2 cut(s)	73, 133
HinfI	GANTC	3 cut(s)	114, 179, 278
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	5 cut(s)	151, 163, 197, 221, 266
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	2 cut(s)	73, 133
Hpy188I	TCNGA	2 cut(s)	178, 241
Hpy188III	TCNNGA	2 cut(s)	168, 211
Hpy8I	GTNNAC	2 cut(s)	73, 133
HpyCH4V	TGCA	4 cut(s)	38, 85, 103, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	369
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	4 cut(s)	38, 71, 297, 342
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	3 cut(s)	20, 102, 313
MaeI	CTAG	3 cut(s)	285, 299, 369
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	1 cut(s)	337
MluCI	AATT	3 cut(s)	206, 331, 381
MlyI	GAGTC	2 cut(s)	173, 272
MmeI	TCCRAC	1 cut(s)	201
MnlI	CCTC	2 cut(s)	164, 253
MseI	TTAA	4 cut(s)	72, 158, 309, 397
MspI	CCGG	5 cut(s)	151, 163, 197, 221, 266
MspR9I	CCNGG	2 cut(s)	109, 266
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	1 cut(s)	369
NciI	CCSGG	1 cut(s)	266
NdeII	GATC	1 cut(s)	327
NlaIII	CATG	4 cut(s)	38, 71, 297, 342
NlaIV	GGNNCC	3 cut(s)	22, 175, 264
NmuCI	GTSAC	1 cut(s)	275
NspI	RCATGY	1 cut(s)	297
PciI	ACATGT	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	114
PleI	GAGTC	2 cut(s)	173, 272
PpsI	GAGTC	2 cut(s)	173, 272
PpuMI	RGGWCCY	2 cut(s)	262, 302
PscI	ACATGT	1 cut(s)	293
Psp5II	RGGWCCY	2 cut(s)	262, 302
Psp6I	CCWGG	1 cut(s)	107
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	3 cut(s)	22, 175, 264
PspPI	GGNCC	3 cut(s)	165, 262, 302
PspPPI	RGGWCCY	2 cut(s)	262, 302
SaqAI	TTAA	4 cut(s)	72, 158, 309, 397
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	3 cut(s)	165, 262, 302
SchI	GAGTC	2 cut(s)	173, 272
ScrFI	CCNGG	2 cut(s)	109, 266
SetI	ASST	6 cut(s)	99, 128, 175, 264, 304, 318
SgrAI	CRCCGGYG	1 cut(s)	150
SinI	GGWCC	3 cut(s)	165, 262, 302
Sse9I	AATT	3 cut(s)	206, 331, 381
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	3 cut(s)	285, 299, 369
StyD4I	CCNGG	2 cut(s)	107, 264
TasI	AATT	3 cut(s)	206, 331, 381
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	4 cut(s)	72, 158, 309, 397
Tru9I	TTAA	4 cut(s)	72, 158, 309, 397
TseFI	GTSAC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	2 cut(s)	324, 338
VpaK11BI	GGWCC	3 cut(s)	165, 262, 302
XceI	RCATGY	1 cut(s)	297
XspI	CTAG	3 cut(s)	285, 299, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.