Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037859.1

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

2064 .. 2559

Gene Structure 496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037859.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 496 bp

atggcttccgcttatcatcataagcctcatgctgtttgtattccagttccatctcaaagccacataaaggctatgcttaaattaaccaaaatcctccaccacagaggctttcacattacctttgtcaacacagaattcaaccacaagcgatttcttaagtctcgaggacccaactccctcgatggtttacctgatttttactttgaagccatccctgatggcattccggaatcagatgaagatgccacccaaaatggcactttgattgactttatcagaaatcatctcttggctgcatttcgtgacctcctaataaaactaaacactactagtcctccagtgacttgcattgtttcagatggtttcctgtccacttatactatgacagctgcagaagaacttggaatccctattacattgttctacactatttctgcttgcagcttcatgggattcaggaaattccgtactttgcttgagaaagggcttgcaccac

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

165

Amino Acids

18.48

Weight (kDa)

7.81

Isoelectric Point (pI)

38.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	226
AciI	CCGC	1 cut(s)	9
AcsI	RAATTY	2 cut(s)	134, 461
AfaI	GTAC	1 cut(s)	469
AfiI	CCNNNNNNNGG	1 cut(s)	67
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	139, 206
AhlI	ACTAGT	1 cut(s)	329
AloI	GAACNNNNNNTCC	2 cut(s)	390, 422
AluBI	AGCT	2 cut(s)	389, 444
AluI	AGCT	2 cut(s)	389, 444
Alw26I	GTCTC	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	162
Aor13HI	TCCGGA	1 cut(s)	226
ApeKI	GCWGC	3 cut(s)	293, 389, 441
ApoI	RAATTY	2 cut(s)	134, 461
AspS9I	GGNCC	1 cut(s)	167
AvaI	CYCGRG	1 cut(s)	162
AvaII	GGWCC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	280, 376, 453
BccI	CCATC	5 cut(s)	58, 176, 212, 218, 353
BcoDI	GTCTC	1 cut(s)	165
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	390
BfrI	CTTAAG	1 cut(s)	155
BisI	GCNGC	3 cut(s)	294, 390, 442
BlsI	GCNGC	3 cut(s)	295, 391, 443
Bme18I	GGWCC	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	162
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	1 cut(s)	232
BpmI	CTGGAG	1 cut(s)	321
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	319, 349
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	44, 338
BseAI	TCCGGA	1 cut(s)	226
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseNI	ACTGG	2 cut(s)	44, 338
BseXI	GCAGC	3 cut(s)	280, 376, 453
BsiHKCI	CYCGRG	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	226
BspACI	CCGC	1 cut(s)	9
BspEI	TCCGGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	394
BspTI	CTTAAG	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	44, 338
BstAFI	CTTAAG	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	439, 489
BstF5I	GGATG	1 cut(s)	210
BstMAI	GTCTC	1 cut(s)	165
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	3 cut(s)	280, 376, 453
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	345
Cac8I	GCNNGC	2 cut(s)	439, 489
Cfr13I	GGNCC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	468
CviAII	CATG	2 cut(s)	29, 448
CviQI	GTAC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	167
Eco88I	CYCGRG	1 cut(s)	162
EcoO109I	RGGNCCY	1 cut(s)	167
EcoRI	GAATTC	1 cut(s)	134
FaeI	CATG	2 cut(s)	32, 451
FaiI	YATR	7 cut(s)	21, 30, 65, 74, 378, 383, 449
FatI	CATG	2 cut(s)	28, 447
Fnu4HI	GCNGC	3 cut(s)	294, 390, 442
FokI	GGATG	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	294, 390, 442
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	3 cut(s)	294, 390, 442
GsuI	CTGGAG	1 cut(s)	321
HapII	CCGG	1 cut(s)	227
Hin1II	CATG	2 cut(s)	32, 451
HincII	GTYRAC	1 cut(s)	127
HindII	GTYRAC	1 cut(s)	127
HinfI	GANTC	3 cut(s)	230, 405, 453
HpaII	CCGG	1 cut(s)	227
Hpy166II	GTNNAC	3 cut(s)	127, 188, 372
Hpy188I	TCNGA	3 cut(s)	235, 278, 358
Hpy188III	TCNNGA	4 cut(s)	162, 227, 302, 457
Hpy8I	GTNNAC	3 cut(s)	127, 188, 372
HpyCH4V	TGCA	5 cut(s)	296, 348, 392, 441, 491
Hsp92II	CATG	2 cut(s)	32, 451
Kpn2I	TCCGGA	1 cut(s)	226
LpnPI	CCDG	7 cut(s)	57, 204, 228, 240, 351, 380, 442
Lsp1109I	GCAGC	3 cut(s)	280, 376, 453
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	2 cut(s)	302, 340
MboII	GAAGA	2 cut(s)	251, 407
MluCI	AATT	3 cut(s)	80, 134, 461
MnlI	CCTC	7 cut(s)	36, 98, 104, 158, 188, 317, 345
MroI	TCCGGA	1 cut(s)	226
MseI	TTAA	3 cut(s)	78, 83, 156
MspA1I	CMGCKG	1 cut(s)	389
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	1 cut(s)	227
Mva1269I	GAATGC	1 cut(s)	222
NlaIII	CATG	2 cut(s)	32, 451
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	302, 340
PaeR7I	CTCGAG	1 cut(s)	162
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	3 cut(s)	230, 405, 453
PkrI	GCNGC	3 cut(s)	295, 391, 443
PpuMI	RGGWCCY	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	167
PspPPI	RGGWCCY	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	394
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	469
RsaNI	GTAC	1 cut(s)	468
SaqAI	TTAA	3 cut(s)	78, 83, 156
SatI	GCNGC	3 cut(s)	294, 390, 442
Sau96I	GGNCC	1 cut(s)	167
SetI	ASST	5 cut(s)	122, 193, 309, 391, 446
SfaNI	GCATC	1 cut(s)	232
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	167
SlaI	CTCGAG	1 cut(s)	162
SmlI	CTYRAG	3 cut(s)	155, 162, 476
SmoI	CTYRAG	3 cut(s)	155, 162, 476
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	3 cut(s)	80, 134, 461
SsiI	CCGC	1 cut(s)	9
SspMI	CTAG	1 cut(s)	330
TaqI	TCGA	2 cut(s)	163, 180
TasI	AATT	3 cut(s)	80, 134, 461
TfiI	GAWTC	3 cut(s)	230, 405, 453
Tru1I	TTAA	3 cut(s)	78, 83, 156
Tru9I	TTAA	3 cut(s)	78, 83, 156
TscAI	CASTG	1 cut(s)	345
TseFI	GTSAC	2 cut(s)	302, 340
TseI	GCWGC	3 cut(s)	293, 389, 441
Tsp45I	GTSAC	2 cut(s)	302, 340
TspDTI	ATGAA	2 cut(s)	252, 436
TspGWI	ACGGA	1 cut(s)	455
TspRI	CASTG	1 cut(s)	345
Vha464I	CTTAAG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	167
XapI	RAATTY	2 cut(s)	134, 461
XhoI	CTCGAG	1 cut(s)	162
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.