Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

10911333 .. 10913277

Gene Structure 1945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1125300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTAAAACTTGCAAAGCTCCTCCACCACAAAGGCTTTCACATAGCTTTTGTTAACACAGAGTACAACCACAAGCGCTTTCTTAAATTTCTTGGCCCCAGCTCCCTCGATGGCTTGCCTGACTTCCGGTATGAAACAATCCCAGATGGCCTTTCAGATACCAATCCCCGCCAAGAGTTCCCTTTGCTTCAAGAGTCCATCAGAAAGAACTTCTTGGCTCCGTTGCGTAACCTCCTCAAGAAACTGAATGACAGTAATCCTCCAGTGACTTGTATGGTTTCAGATGGTTTTGTGACATCGACCATCACAGCTGCTAAAGAGCTTGGAATTCCTATCGTAGTCCTCCTTCCTTTTGCTGCAGCCGGCTTCATGGGCTCTAAACAATATCCTATTTTGGTGGAAAAAGGACTTGCACCTTTGAAAGATGAGAGCTGCTTGACAAAAGGATTTTTGGAGATGGTAATAGATTGGGTTCCAGGAATGAAGGATTTTAGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

167

Amino Acids

18.52

Weight (kDa)

8.42

Isoelectric Point (pI)

37.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	169
AcsI	RAATTY	2 cut(s)	86, 327
AfaI	GTAC	1 cut(s)	65
AfeI	AGCGCT	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	191, 421
AjnI	CCWGG	1 cut(s)	475
AluBI	AGCT	7 cut(s)	19, 47, 102, 311, 322, 432, 495
AluI	AGCT	7 cut(s)	19, 47, 102, 311, 322, 432, 495
Aor51HI	AGCGCT	1 cut(s)	77
AoxI	GGCC	2 cut(s)	94, 148
ApeKI	GCWGC	5 cut(s)	311, 356, 359, 432, 495
ApoI	RAATTY	2 cut(s)	86, 327
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	377
BarI	GAAGNNNNNNTAC	2 cut(s)	330, 362
BbvI	GCAGC	5 cut(s)	298, 343, 371, 419, 482
BccI	CCATC	6 cut(s)	104, 140, 206, 278, 311, 451
BciT130I	CCWGG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	79
BisI	GCNGC	5 cut(s)	312, 357, 360, 433, 496
BlsI	GCNGC	5 cut(s)	313, 358, 361, 434, 497
Bme1390I	CCNGG	1 cut(s)	477
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	3 cut(s)	97, 219, 474
BmrFI	CCNGG	1 cut(s)	477
BpmI	CTGGAG	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	221
BsaBI	GATNNNNATC	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	263
Bse8I	GATNNNNATC	1 cut(s)	162
BseBI	CCWGG	1 cut(s)	477
BseJI	GATNNNNATC	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	2 cut(s)	11, 224
BseXI	GCAGC	5 cut(s)	298, 343, 371, 419, 482
BseYI	CCCAGC	1 cut(s)	98
BshFI	GGCC	2 cut(s)	96, 150
BsiSI	CCGG	2 cut(s)	127, 363
BsnI	GGCC	2 cut(s)	96, 150
Bsp1286I	GDGCHC	1 cut(s)	377
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	2 cut(s)	96, 150
BspLI	GGNNCC	3 cut(s)	97, 219, 474
BspMAI	CTGCAG	1 cut(s)	361
BsrFI	RCCGGY	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	477
Bst4CI	ACNGT	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	116, 364
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	78
BstMWI	GCNNNNNNNGC	1 cut(s)	372
BstNI	CCWGG	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	475
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	5 cut(s)	298, 343, 371, 419, 482
BsuRI	GGCC	2 cut(s)	96, 150
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	116, 364
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	64
CviAII	CATG	1 cut(s)	370
CviQI	GTAC	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	377
Eco47III	AGCGCT	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	327
EcoRII	CCWGG	1 cut(s)	475
EcoT38I	GRGCYC	1 cut(s)	377
FaeI	CATG	1 cut(s)	373
FaiI	YATR	4 cut(s)	44, 132, 275, 371
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FatI	CATG	1 cut(s)	369
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	5 cut(s)	312, 357, 360, 433, 496
FriOI	GRGCYC	1 cut(s)	377
Fsp4HI	GCNGC	5 cut(s)	312, 357, 360, 433, 496
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	5 cut(s)	312, 357, 360, 433, 496
GsaI	CCCAGC	1 cut(s)	102
GsuI	CTGGAG	1 cut(s)	246
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	96, 150
HapII	CCGG	2 cut(s)	127, 363
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	194
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	2 cut(s)	127, 363
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	3 cut(s)	157, 203, 283
Hpy188III	TCNNGA	2 cut(s)	191, 238
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	2 cut(s)	356, 478
HpyCH4III	ACNGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	14, 359, 413
HpyF10VI	GCNNNNNNNGC	1 cut(s)	372
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	1 cut(s)	76
KroI	GCCGGC	1 cut(s)	362
KroNI	GCCGGC	1 cut(s)	364
KspAI	GTTAAC	1 cut(s)	55
LmnI	GCTCC	3 cut(s)	24, 107, 223
LpnPI	CCDG	8 cut(s)	112, 132, 140, 156, 276, 376, 462, 489
Lsp1109I	GCAGC	5 cut(s)	298, 343, 371, 419, 482
MaeIII	GTNAC	3 cut(s)	227, 265, 292
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	2 cut(s)	86, 327
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	6 cut(s)	32, 116, 242, 245, 270, 353
MroNI	GCCGGC	1 cut(s)	362
MseI	TTAA	2 cut(s)	54, 84
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	2 cut(s)	127, 363
MspR9I	CCNGG	1 cut(s)	477
MvaI	CCWGG	1 cut(s)	477
MwoI	GCNNNNNNNGC	1 cut(s)	372
NaeI	GCCGGC	1 cut(s)	364
NgoMIV	GCCGGC	1 cut(s)	362
NlaIII	CATG	1 cut(s)	373
NlaIV	GGNNCC	3 cut(s)	97, 219, 474
NmuCI	GTSAC	2 cut(s)	265, 292
PdiI	GCCGGC	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	5 cut(s)	313, 358, 361, 434, 497
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	475
PspFI	CCCAGC	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	475
PspN4I	GGNNCC	3 cut(s)	97, 219, 474
PspPI	GGNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
SaqAI	TTAA	2 cut(s)	54, 84
SatI	GCNGC	5 cut(s)	312, 357, 360, 433, 496
Sau96I	GGNCC	1 cut(s)	95
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	377
SetI	ASST	9 cut(s)	21, 49, 104, 234, 313, 324, 418, 434, 497
SfcI	CTRYAG	1 cut(s)	357
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	86, 327
SsiI	CCGC	1 cut(s)	169
StyD4I	CCNGG	1 cut(s)	475
TaaI	ACNGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	108, 299
TasI	AATT	2 cut(s)	86, 327
TatI	WGTACW	1 cut(s)	63
Tru1I	TTAA	2 cut(s)	54, 84
Tru9I	TTAA	2 cut(s)	54, 84
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	2 cut(s)	265, 292
TseI	GCWGC	5 cut(s)	311, 356, 359, 432, 495
Tsp45I	GTSAC	2 cut(s)	265, 292
TspDTI	ATGAA	3 cut(s)	147, 358, 497
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	270
XapI	RAATTY	2 cut(s)	86, 327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.