Rroxscaffold_2G00097670

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000975
Physical Location & Seq
Reverse (-)
18887619 .. 18889202
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097670.1

Sequence Viewer

Length: 1017 bp
ATGTGTAGCGCACATTCATACACACAAGATAAGATGAGTTCCAAGGAAGTAGCTAAAAGGCCTCATGCAGTATGCGTTCCACTGCCGTTTCAAAGCCATATCAAGGCAATGCTCAAACTAGCAAAATTCCTCCACCACAGAGGTCTTCATATAACCTTTGTCAACACAGTGTTCAACCACAAACGCTTTCTTCAATCTCTAGGACCTAACTCCCTTGATGGCTTGCCTGATTTTCGGTTCGAAACCATTCCAGATGGCCTTCCAAGTTCAGATGAAGATGTGACGCAAGACGTCTATTTGCTTTGTGGTGCAGTCAGGAAAAATTTGTTAGCTCCGTTTCAAGACCTCCTCATGAAACTCAATGAAGCTGCAATTACTTCCCACAGTACTAATCCTCCAGTGACTCGGATAGTAGCAGATGGTTGGAATTCCTTTGTCTTCAGAGCAGCAGAAACAAATCGAATCCCTGTTACACTCTTCTTTACTGTTGCTGCAAGCAGCTTCATGGGATTTGCACAATATCCCACTTTGATGGAAAAAGGATTAGCACCACTCAAAGGGATCTCCCGACCAACTTTCAAGTCACAAATCGATGATGACATCTGGAACCTACGCTTGGAAGCAATTGAAGGAGTTCATAAAGTGAAGCCGTTGTTCTTCATACTTTTGATGCATTGGAGCATCATGTTTTGGAATCTCTCTCGTCGATGCTCCATCCACATGTTTATGCCATTGGCCCCTCTCCAATTACTCCTTAATCGGGATACCGAACACCATTTGAACCCTATGGGTTACGGTCTATGGAAAGAAGAAACCGAGTGCCTCCAATGGCTCAACTCCAAGGCGCCAAGTACGGTTGTTTATGTGAACTTTGGCGGTATAACGATCACGACATTGAACAATCTTGTAGAGTTTGCTTGGGGACTTGCAAATACCAAGCTTCCCTTCTTTTGGGTAATAAGACCTGATTTAGTTGCTTTGGTGAATCGGGCTATTTTGCCACCGAGTTTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

338

Amino Acids

38.4

Weight (kDa)

8.93

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 294
AccB1I GGYRCC 1 cut(s) 844
AciI CCGC 1 cut(s) 876
AclWI GGATC 1 cut(s) 569
AcsI RAATTY 3 cut(s) 125, 322, 427
AcuI CTGAAG 1 cut(s) 424
AcyI GRCGYC 2 cut(s) 291, 845
AfaI GTAC 2 cut(s) 388, 853
AfiI CCNNNNNNNGG 5 cut(s) 103, 557, 616, 760, 951
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 8 cut(s) 92, 175, 194, 341, 580, 629, 781, 898
AjuI GAANNNNNNNTTGG 4 cut(s) 599, 631, 929, 961
AluBI AGCT 5 cut(s) 53, 332, 368, 501, 940
AluI AGCT 5 cut(s) 53, 332, 368, 501, 940
AlwI GGATC 1 cut(s) 569
AoxI GGCC 3 cut(s) 59, 256, 735
ApeKI GCWGC 4 cut(s) 368, 446, 491, 498
ApoI RAATTY 3 cut(s) 125, 322, 427
Asp700I GAANNNNTTC 2 cut(s) 246, 633
AspLEI GCGC 2 cut(s) 11, 847
AspS9I GGNCC 2 cut(s) 203, 736
AsuHPI GGTGA 1 cut(s) 994
AsuII TTCGAA 1 cut(s) 240
AvaII GGWCC 1 cut(s) 203
BanI GGYRCC 1 cut(s) 844
BbsI GAAGAC 2 cut(s) 137, 430
BbvI GCAGC 4 cut(s) 355, 458, 478, 510
BccI CCATC 5 cut(s) 212, 248, 413, 526, 722
BceAI ACGGC 2 cut(s) 70, 634
BciVI GTATCC 1 cut(s) 757
BfaI CTAG 2 cut(s) 119, 200
BfoI RGCGCY 1 cut(s) 848
BfuI GTATCC 1 cut(s) 757
BisI GCNGC 4 cut(s) 369, 447, 492, 499
BlsI GCNGC 4 cut(s) 370, 448, 493, 500
BmcAI AGTACT 1 cut(s) 388
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 203, 736
BmiI GGNNCC 3 cut(s) 608, 738, 846
BmsI GCATC 3 cut(s) 660, 690, 698
BpiI GAAGAC 2 cut(s) 137, 430
BpmI CTGGAG 1 cut(s) 381
Bpu14I TTCGAA 1 cut(s) 240
Bsa29I ATCGAT 1 cut(s) 591
BsaHI GRCGYC 2 cut(s) 291, 845
BsaJI CCNNGG 2 cut(s) 42, 840
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bsc4I CCNNNNNNNGG 5 cut(s) 103, 557, 616, 760, 951
Bse1I ACTGG 1 cut(s) 398
Bse3DI GCAATG 1 cut(s) 114
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 2 cut(s) 42, 840
BseGI GGATG 1 cut(s) 714
BseLI CCNNNNNNNGG 5 cut(s) 103, 557, 616, 760, 951
BseMI GCAATG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 4 cut(s) 355, 458, 478, 510
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 3 cut(s) 61, 258, 737
BshNI GGYRCC 1 cut(s) 844
BshVI ATCGAT 1 cut(s) 591
BslFI GGGAC 1 cut(s) 936
BslI CCNNNNNNNGG 5 cut(s) 103, 557, 616, 760, 951
BsmFI GGGAC 1 cut(s) 936
BsnI GGCC 3 cut(s) 61, 258, 737
Bsp119I TTCGAA 1 cut(s) 240
Bsp143I GATC 2 cut(s) 561, 885
BspACI CCGC 1 cut(s) 876
BspANI GGCC 3 cut(s) 61, 258, 737
BspDI ATCGAT 1 cut(s) 591
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 3 cut(s) 608, 738, 846
BspPI GGATC 1 cut(s) 569
BspT104I TTCGAA 1 cut(s) 240
BspT107I GGYRCC 1 cut(s) 844
BsrDI GCAATG 1 cut(s) 114
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 42, 840
BssMI GATC 2 cut(s) 561, 885
BssNI GRCGYC 2 cut(s) 291, 845
BssT1I CCWWGG 2 cut(s) 42, 840
Bst4CI ACNGT 5 cut(s) 169, 386, 487, 797, 856
Bst6I CTCTTC 1 cut(s) 482
BstACI GRCGYC 2 cut(s) 291, 845
BstBI TTCGAA 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 224, 496
BstF5I GGATG 1 cut(s) 714
BstH2I RGCGCY 1 cut(s) 848
BstHHI GCGC 2 cut(s) 11, 847
BstKTI GATC 2 cut(s) 564, 888
BstMBI GATC 2 cut(s) 561, 885
BstNSI RCATGY 1 cut(s) 724
BstV1I GCAGC 4 cut(s) 355, 458, 478, 510
BstV2I GAAGAC 2 cut(s) 137, 430
BstX2I RGATCY 1 cut(s) 561
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 1 cut(s) 561
Bsu15I ATCGAT 1 cut(s) 591
BsuI GTATCC 1 cut(s) 757
BsuRI GGCC 3 cut(s) 61, 258, 737
BsuTUI ATCGAT 1 cut(s) 591
BtsCI GGATG 1 cut(s) 714
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 3 cut(s) 80, 174, 405
Cac8I GCNNGC 2 cut(s) 224, 496
CciI TCATGA 1 cut(s) 351
CfoI GCGC 2 cut(s) 11, 847
Cfr13I GGNCC 2 cut(s) 203, 736
ClaI ATCGAT 1 cut(s) 591
CseI GACGC 1 cut(s) 292
Csp6I GTAC 2 cut(s) 387, 852
CspCI CAANNNNNGTGG 1 cut(s) 990
CviAII CATG 5 cut(s) 65, 352, 505, 685, 721
CviQI GTAC 2 cut(s) 387, 852
DinI GGCGCC 1 cut(s) 846
DpnI GATC 2 cut(s) 563, 887
DpnII GATC 2 cut(s) 561, 885
Eam1104I CTCTTC 1 cut(s) 482
EarI CTCTTC 1 cut(s) 482
Eco130I CCWWGG 2 cut(s) 42, 840
Eco147I AGGCCT 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 424
EcoO109I RGGNCCY 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 427
EcoT14I CCWWGG 2 cut(s) 42, 840
EcoT22I ATGCAT 1 cut(s) 675
EgeI GGCGCC 1 cut(s) 846
EheI GGCGCC 1 cut(s) 846
ErhI CCWWGG 2 cut(s) 42, 840
FaeI CATG 5 cut(s) 68, 355, 508, 688, 724
FalI AAGNNNNNCTT 2 cut(s) 929, 961
FaqI GGGAC 1 cut(s) 936
FatI CATG 5 cut(s) 64, 351, 504, 684, 720
Fnu4HI GCNGC 4 cut(s) 369, 447, 492, 499
FokI GGATG 1 cut(s) 701
Fsp4HI GCNGC 4 cut(s) 369, 447, 492, 499
FspBI CTAG 2 cut(s) 119, 200
GlaI GCGC 2 cut(s) 10, 846
GluI GCNGC 4 cut(s) 369, 447, 492, 499
GsuI CTGGAG 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 848
HaeIII GGCC 3 cut(s) 61, 258, 737
HgaI GACGC 1 cut(s) 292
HhaI GCGC 2 cut(s) 11, 847
Hin1I GRCGYC 2 cut(s) 291, 845
Hin1II CATG 5 cut(s) 68, 355, 508, 688, 724
Hin6I GCGC 2 cut(s) 9, 845
HinP1I GCGC 2 cut(s) 9, 845
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 938
HinfI GANTC 4 cut(s) 403, 462, 694, 985
HphI GGTGA 1 cut(s) 994
Hpy166II GTNNAC 2 cut(s) 163, 868
Hpy188I TCNGA 3 cut(s) 271, 408, 443
Hpy188III TCNNGA 8 cut(s) 251, 316, 341, 352, 567, 604, 761, 889
Hpy8I GTNNAC 2 cut(s) 163, 868
Hpy99I CGWCG 1 cut(s) 708
HpyAV CCTTC 3 cut(s) 269, 623, 955
HpyCH4III ACNGT 5 cut(s) 169, 386, 487, 797, 856
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 7 cut(s) 68, 311, 371, 494, 515, 673, 929
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 2 cut(s) 291, 845
Hsp92II CATG 5 cut(s) 68, 355, 508, 688, 724
HspAI GCGC 2 cut(s) 9, 845
KasI GGCGCC 1 cut(s) 844
Kzo9I GATC 2 cut(s) 561, 885
LmnI GCTCC 3 cut(s) 337, 678, 716
LpnPI CCDG 7 cut(s) 240, 264, 301, 411, 480, 589, 978
Lsp1109I GCAGC 4 cut(s) 355, 458, 478, 510
LweI GCATC 3 cut(s) 660, 690, 698
MaeI CTAG 2 cut(s) 119, 200
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 5 cut(s) 280, 400, 469, 582, 791
MalI GATC 2 cut(s) 563, 887
MboI GATC 2 cut(s) 561, 885
MboII GAAGA 7 cut(s) 137, 182, 287, 430, 469, 649, 821
MfeI CAATTG 1 cut(s) 624
MflI RGATCY 1 cut(s) 561
MluCI AATT 6 cut(s) 125, 322, 372, 427, 624, 746
Mly113I GGCGCC 1 cut(s) 845
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 8 cut(s) 72, 134, 140, 356, 359, 405, 750, 833
Mph1103I ATGCAT 1 cut(s) 675
MroXI GAANNNNTTC 2 cut(s) 246, 633
MseI TTAA 1 cut(s) 756
MslI CAYNNNNRTG 3 cut(s) 530, 719, 725
MunI CAATTG 1 cut(s) 624
NarI GGCGCC 1 cut(s) 845
NdeII GATC 2 cut(s) 561, 885
NlaIII CATG 5 cut(s) 68, 355, 508, 688, 724
NlaIV GGNNCC 3 cut(s) 608, 738, 846
NmuCI GTSAC 3 cut(s) 280, 400, 582
NsiI ATGCAT 1 cut(s) 675
NspI RCATGY 1 cut(s) 724
NspV TTCGAA 1 cut(s) 240
PagI TCATGA 1 cut(s) 351
PceI AGGCCT 1 cut(s) 61
PciI ACATGT 1 cut(s) 720
PdmI GAANNNNTTC 2 cut(s) 246, 633
PfeI GAWTC 3 cut(s) 462, 694, 985
PkrI GCNGC 4 cut(s) 370, 448, 493, 500
PleI GAGTC 1 cut(s) 397
PluTI GGCGCC 1 cut(s) 848
PpsI GAGTC 1 cut(s) 397
PpuMI RGGWCCY 1 cut(s) 203
PscI ACATGT 1 cut(s) 720
Psp5II RGGWCCY 1 cut(s) 203
PspN4I GGNNCC 3 cut(s) 608, 738, 846
PspPI GGNCC 2 cut(s) 203, 736
PspPPI RGGWCCY 1 cut(s) 203
PsuI RGATCY 1 cut(s) 561
RsaI GTAC 2 cut(s) 388, 853
RsaNI GTAC 2 cut(s) 387, 852
RseI CAYNNNNRTG 3 cut(s) 530, 719, 725
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 4 cut(s) 369, 447, 492, 499
Sau3AI GATC 2 cut(s) 561, 885
Sau96I GGNCC 2 cut(s) 203, 736
ScaI AGTACT 1 cut(s) 388
SchI GAGTC 1 cut(s) 397
SfaNI GCATC 3 cut(s) 660, 690, 698
SfoI GGCGCC 1 cut(s) 846
SfuI TTCGAA 1 cut(s) 240
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 3 cut(s) 530, 719, 725
Sse9I AATT 6 cut(s) 125, 322, 372, 427, 624, 746
SseBI AGGCCT 1 cut(s) 61
SsiI CCGC 1 cut(s) 876
SspDI GGCGCC 1 cut(s) 844
SspMI CTAG 2 cut(s) 119, 200
StuI AGGCCT 1 cut(s) 61
StyI CCWWGG 2 cut(s) 42, 840
TaaI ACNGT 5 cut(s) 169, 386, 487, 797, 856
TaiI ACGT 1 cut(s) 294
TaqI TCGA 4 cut(s) 240, 460, 591, 706
TasI AATT 6 cut(s) 125, 322, 372, 427, 624, 746
TatI WGTACW 1 cut(s) 386
TfiI GAWTC 3 cut(s) 462, 694, 985
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TscAI CASTG 3 cut(s) 87, 174, 405
TseFI GTSAC 3 cut(s) 280, 400, 582
TseI GCWGC 4 cut(s) 368, 446, 491, 498
Tsp45I GTSAC 3 cut(s) 280, 400, 582
TspDTI ATGAA 8 cut(s) 6, 137, 288, 368, 378, 493, 626, 649
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 3 cut(s) 87, 174, 405
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 3 cut(s) 125, 322, 427
XceI RCATGY 1 cut(s) 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 1008
XmnI GAANNNNTTC 2 cut(s) 246, 633
XspI CTAG 2 cut(s) 119, 200
ZraI GACGTC 1 cut(s) 292
ZrmI AGTACT 1 cut(s) 388
Zsp2I ATGCAT 1 cut(s) 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.