Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

24425109 .. 24438253

Gene Structure 13145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G018670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGGTTCAACAGATGTAGCAGGATCCAACAAACTACATGCAGTTTGTGTCCCTTACCCAGCACAAGACCATGTCAAACCCATGATGCAATTAGCCAAGCTTCTGCACTCGAGGGGAATCCACATTACCTTTGTCAACACCGAGTTCAATCACAGGCGCTTAGTTCGGTCCAAAGGTTCCGACTTATCCGTTGAGGGCCTAGTGGATTTCCAGTTTGAGACCATACCAGATGGGCTGCCACCTTCGGATAAAGATGCGACACAAGATGTCCCCGCTTTATGCGACTACACCAGGAAAACTTGTCTAGGCCCTTTTAAGGAGCTGGTGATAAAGATCAATTCATCATGTGAAGTGCCAAAAGTTAGTTGTGTAATCACAGATGGTGTGATGGGATTTGGGAGGGAAGCTGCTAAGGAATTAGGGATTCTTGAGGTTCAATTTTGGACCGCCTCTGCTTGTGGCTTCATGGCTTACCTGCACTATAGTGAACTACCCAAACGAGGAATTGTTCCTTTTCAAGATGAAGAATACATGCATGACGGTACACTAAATACACAAATTGACTGGATCCCAGGCATGAAAAATGTCAGGCTCACGGACATTCCTAGTTTCATCAGAGCTACTGATGTCAATGATATAATGTTCGATTTCATGGGATCCGTGTTAAGAATATCTTTCCAAAACTTCTTTTTACATGTTAGCTCAAGCTTATGGAAAGAAGACGCAAAATGTCTTGAGTGGCTTGATGAACAGAAACCCAACTCTGTTGTTTATGTGAATTATGGGAGCATAACATCAATGACAGACCAACATTTGAAAGAATTTGCTTGGGGGCTGGCAAATAGCAAGCACCCCTTTTTGTGGATACTGAGGCATGATGTGGTAAAGGGTGATTCGGTAGTGTTACCTGATGATTTTTTTGAAGAGATCAAGGATAGGGGTTGCATTGCAAATTGGTGTCCCCAGGACCAAGTGCTAGCACATCCATCAGTTGGGGTTTTTCTAACACATTGTGGTTGGAATTCTACTATTGAAAGTATAGCTGAAGGTGTGCCTGTAATTTATTGGCCTTTCTTTGCCGAACAGCAAACAAATTGCCATTTCGCGTGTACTGATTGGGAAATTGGAATGGAGGTGAACAATGATGTTAAGCGCGACGAGATTGAAGAGCTCGTTAAGGAAATACTGGAAGGTGAAAAAGGCTTGAAAATGAGGGAAAAGGCAGAGCAATGGAAGAAAAAAGCTGTAGAAGCTACTGAGATAGGAGGGTCATCTCATATTAATTTTGGTAGATTGATCAAGGAGAGGCTCAAATATGGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

441

Amino Acids

49.96

Weight (kDa)

5.32

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	13 - 140	9.1e-08	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	254 - 399	7.6e-24	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	483
AccB7I	CCANNNNNTGG	1 cut(s)	992
AccII	CGCG	2 cut(s)	1106, 1155
AciI	CCGC	2 cut(s)	273, 447
AclWI	GGATC	6 cut(s)	18, 31, 562, 575, 651, 664
AcsI	RAATTY	2 cut(s)	821, 1021
AcuI	CTGAAG	1 cut(s)	1065
AdeI	CACNNNGTG	1 cut(s)	1013
AfaI	GTAC	2 cut(s)	544, 1111
AfiI	CCNNNNNNNGG	4 cut(s)	316, 500, 861, 992
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	9 cut(s)	9, 148, 437, 518, 817, 923, 1034, 1166, 1207
AjnI	CCWGG	3 cut(s)	290, 571, 963
AleI	CACNNNNGTG	1 cut(s)	483
Alw21I	GWGCWC	1 cut(s)	1173
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	6 cut(s)	18, 31, 562, 575, 651, 664
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	3 cut(s)	196, 307, 1067
ApeKI	GCWGC	2 cut(s)	235, 407
ApoI	RAATTY	2 cut(s)	821, 1021
AseI	ATTAAT	1 cut(s)	1281
AspLEI	GCGC	2 cut(s)	159, 1155
AspS9I	GGNCC	5 cut(s)	168, 196, 308, 444, 967
AsuHPI	GGTGA	4 cut(s)	337, 902, 1147, 1205
AsuNHI	GCTAGC	1 cut(s)	976
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	3 cut(s)	168, 444, 967
BamHI	GGATCC	3 cut(s)	23, 567, 656
BanII	GRGCYC	1 cut(s)	1173
BbsI	GAAGAC	1 cut(s)	726
Bbv12I	GWGCWC	1 cut(s)	1173
BbvI	GCAGC	2 cut(s)	222, 394
BccI	CCATC	4 cut(s)	224, 374, 382, 994
BciT130I	CCWGG	3 cut(s)	292, 573, 965
BciVI	GTATCC	1 cut(s)	858
BclI	TGATCA	1 cut(s)	1296
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	4 cut(s)	200, 305, 606, 977
BfmI	CTRYAG	2 cut(s)	481, 1245
BfoI	RGCGCY	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	858
BisI	GCNGC	2 cut(s)	236, 408
BlsI	GCNGC	2 cut(s)	237, 409
Bme1390I	CCNGG	3 cut(s)	292, 573, 965
Bme18I	GGWCC	3 cut(s)	168, 444, 967
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	5 cut(s)	168, 196, 308, 444, 967
BmiI	GGNNCC	4 cut(s)	25, 178, 569, 658
BmrFI	CCNGG	3 cut(s)	292, 573, 965
BmsI	GCATC	2 cut(s)	75, 244
BmtI	GCTAGC	1 cut(s)	980
BpiI	GAAGAC	1 cut(s)	726
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	3 cut(s)	449, 688, 755
BsaBI	GATNNNNATC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	571, 963
Bsc4I	CCNNNNNNNGG	4 cut(s)	316, 500, 861, 992
Bse1I	ACTGG	3 cut(s)	211, 569, 1191
Bse3DI	GCAATG	2 cut(s)	945, 1235
Bse8I	GATNNNNATC	1 cut(s)	332
BseBI	CCWGG	3 cut(s)	292, 573, 965
BseDI	CCNNGG	2 cut(s)	571, 963
BseGI	GGATG	1 cut(s)	982
BseJI	GATNNNNATC	1 cut(s)	332
BseLI	CCNNNNNNNGG	4 cut(s)	316, 500, 861, 992
BseMI	GCAATG	2 cut(s)	945, 1235
BseMII	CTCAG	2 cut(s)	860, 1248
BseNI	ACTGG	3 cut(s)	211, 569, 1191
BseXI	GCAGC	2 cut(s)	222, 394
BseYI	CCCAGC	1 cut(s)	58
BsgI	GTGCAG	2 cut(s)	89, 461
Bsh1236I	CGCG	2 cut(s)	1106, 1155
BshFI	GGCC	3 cut(s)	198, 309, 1069
BsiHKAI	GWGCWC	1 cut(s)	1173
BsiHKCI	CYCGRG	1 cut(s)	109
BslFI	GGGAC	3 cut(s)	35, 254, 945
BslI	CCNNNNNNNGG	4 cut(s)	316, 500, 861, 992
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	3 cut(s)	35, 254, 945
BsnI	GGCC	3 cut(s)	198, 309, 1069
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	1173
Bsp143I	GATC	6 cut(s)	23, 333, 567, 656, 927, 1296
BspACI	CCGC	2 cut(s)	273, 447
BspANI	GGCC	3 cut(s)	198, 309, 1069
BspCNI	CTCAG	2 cut(s)	861, 1249
BspFNI	CGCG	2 cut(s)	1106, 1155
BspLI	GGNNCC	4 cut(s)	25, 178, 569, 658
BspMI	ACCTGC	1 cut(s)	483
BspOI	GCTAGC	1 cut(s)	980
BspPI	GGATC	6 cut(s)	18, 31, 562, 575, 651, 664
BspQI	GCTCTTC	1 cut(s)	1161
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	2 cut(s)	945, 1235
BsrI	ACTGG	3 cut(s)	211, 569, 1191
BssECI	CCNNGG	2 cut(s)	571, 963
BssMI	GATC	6 cut(s)	23, 333, 567, 656, 927, 1296
Bst2UI	CCWGG	3 cut(s)	292, 573, 965
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	2 cut(s)	918, 1161
BstC8I	GCNNGC	3 cut(s)	837, 848, 978
BstDEI	CTNAG	4 cut(s)	160, 411, 869, 1257
BstF5I	GGATG	1 cut(s)	982
BstFNI	CGCG	2 cut(s)	1106, 1155
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	2 cut(s)	159, 1155
BstKTI	GATC	6 cut(s)	26, 336, 570, 659, 930, 1299
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	6 cut(s)	23, 333, 567, 656, 927, 1296
BstMWI	GCNNNNNNNGC	1 cut(s)	1250
BstNI	CCWGG	3 cut(s)	292, 573, 965
BstNSI	RCATGY	3 cut(s)	41, 535, 698
BstSCI	CCNGG	3 cut(s)	290, 571, 963
BstSFI	CTRYAG	2 cut(s)	481, 1245
BstUI	CGCG	2 cut(s)	1106, 1155
BstV1I	GCAGC	2 cut(s)	222, 394
BstV2I	GAAGAC	1 cut(s)	726
BstX2I	RGATCY	3 cut(s)	23, 567, 656
BstYI	RGATCY	3 cut(s)	23, 567, 656
BsuI	GTATCC	1 cut(s)	858
BsuRI	GGCC	3 cut(s)	198, 309, 1069
BtsCI	GGATG	1 cut(s)	982
BveI	ACCTGC	1 cut(s)	483
Cac8I	GCNNGC	3 cut(s)	837, 848, 978
CfoI	GCGC	2 cut(s)	159, 1155
Cfr13I	GGNCC	5 cut(s)	168, 196, 308, 444, 967
CseI	GACGC	1 cut(s)	731
Csp6I	GTAC	2 cut(s)	543, 1110
CviQI	GTAC	2 cut(s)	543, 1110
DdeI	CTNAG	4 cut(s)	160, 411, 869, 1257
DpnI	GATC	6 cut(s)	25, 335, 569, 658, 929, 1298
DpnII	GATC	6 cut(s)	23, 333, 567, 656, 927, 1296
DraIII	CACNNNGTG	1 cut(s)	1013
Eam1104I	CTCTTC	2 cut(s)	918, 1161
EarI	CTCTTC	2 cut(s)	918, 1161
Ecl136II	GAGCTC	1 cut(s)	1171
Eco24I	GRGCYC	1 cut(s)	1173
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	3 cut(s)	168, 444, 967
Eco53kI	GAGCTC	1 cut(s)	1171
Eco57I	CTGAAG	1 cut(s)	1065
Eco88I	CYCGRG	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	1171
EcoO109I	RGGNCCY	2 cut(s)	196, 308
EcoRI	GAATTC	1 cut(s)	1021
EcoRII	CCWGG	3 cut(s)	290, 571, 963
EcoT22I	ATGCAT	1 cut(s)	537
EcoT38I	GRGCYC	1 cut(s)	1173
FalI	AAGNNNNNCTT	4 cut(s)	658, 690, 839, 871
FaqI	GGGAC	3 cut(s)	35, 254, 945
FauI	CCCGC	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	1296
Fnu4HI	GCNGC	2 cut(s)	236, 408
FokI	GGATG	1 cut(s)	969
FriOI	GRGCYC	1 cut(s)	1173
Fsp4HI	GCNGC	2 cut(s)	236, 408
FspBI	CTAG	4 cut(s)	200, 305, 606, 977
GlaI	GCGC	2 cut(s)	158, 1154
GluI	GCNGC	2 cut(s)	236, 408
GsaI	CCCAGC	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	3 cut(s)	198, 309, 1069
HgaI	GACGC	1 cut(s)	731
HhaI	GCGC	2 cut(s)	159, 1155
Hin6I	GCGC	2 cut(s)	157, 1153
HinP1I	GCGC	2 cut(s)	157, 1153
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	2 cut(s)	98, 706
HinfI	GANTC	3 cut(s)	117, 424, 893
HphI	GGTGA	4 cut(s)	337, 902, 1147, 1205
Hpy166II	GTNNAC	5 cut(s)	136, 488, 545, 1110, 1138
Hpy188I	TCNGA	3 cut(s)	181, 247, 617
Hpy188III	TCNNGA	3 cut(s)	428, 518, 734
Hpy8I	GTNNAC	5 cut(s)	136, 488, 545, 1110, 1138
Hpy99I	CGWCG	1 cut(s)	1160
HpyAV	CCTTC	3 cut(s)	252, 1040, 1184
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4V	TGCA	7 cut(s)	41, 88, 106, 478, 535, 945, 950
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1250
HpyF3I	CTNAG	4 cut(s)	160, 411, 869, 1257
HspAI	GCGC	2 cut(s)	157, 1153
Ksp22I	TGATCA	1 cut(s)	1296
Kzo9I	GATC	6 cut(s)	23, 333, 567, 656, 927, 1296
LguI	GCTCTTC	1 cut(s)	1161
LmnI	GCTCC	2 cut(s)	319, 786
Lsp1109I	GCAGC	2 cut(s)	222, 394
LweI	GCATC	2 cut(s)	75, 244
MaeI	CTAG	4 cut(s)	200, 305, 606, 977
MaeIII	GTNAC	1 cut(s)	903
MalI	GATC	6 cut(s)	25, 335, 569, 658, 929, 1298
MboI	GATC	6 cut(s)	23, 333, 567, 656, 927, 1296
MboII	GAAGA	5 cut(s)	536, 731, 935, 1178, 1246
MflI	RGATCY	3 cut(s)	23, 567, 656
MhlI	GDGCHC	1 cut(s)	1173
MmeI	TCCRAC	3 cut(s)	51, 204, 998
Mph1103I	ATGCAT	1 cut(s)	537
MseI	TTAA	5 cut(s)	315, 665, 1149, 1176, 1281
MslI	CAYNNNNRTG	1 cut(s)	483
MspR9I	CCNGG	3 cut(s)	292, 573, 965
MvaI	CCWGG	3 cut(s)	292, 573, 965
MvnI	CGCG	2 cut(s)	1106, 1155
MwoI	GCNNNNNNNGC	1 cut(s)	1250
NdeII	GATC	6 cut(s)	23, 333, 567, 656, 927, 1296
NheI	GCTAGC	1 cut(s)	976
NlaIV	GGNNCC	4 cut(s)	25, 178, 569, 658
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	3 cut(s)	41, 535, 698
OliI	CACNNNNGTG	1 cut(s)	483
PaeR7I	CTCGAG	1 cut(s)	109
PciI	ACATGT	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	1161
PfeI	GAWTC	3 cut(s)	117, 424, 893
PflFI	GACNNNGTC	1 cut(s)	71
PflMI	CCANNNNNTGG	1 cut(s)	992
PkrI	GCNGC	2 cut(s)	237, 409
PscI	ACATGT	1 cut(s)	694
PshBI	ATTAAT	1 cut(s)	1281
Psp124BI	GAGCTC	1 cut(s)	1173
Psp6I	CCWGG	3 cut(s)	290, 571, 963
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	3 cut(s)	290, 571, 963
PspN4I	GGNNCC	4 cut(s)	25, 178, 569, 658
PspPI	GGNCC	5 cut(s)	168, 196, 308, 444, 967
PspXI	VCTCGAGB	1 cut(s)	109
PsuI	RGATCY	3 cut(s)	23, 567, 656
PsyI	GACNNNGTC	1 cut(s)	71
RsaI	GTAC	2 cut(s)	544, 1111
RsaNI	GTAC	2 cut(s)	543, 1110
RseI	CAYNNNNRTG	1 cut(s)	483
SacI	GAGCTC	1 cut(s)	1173
SapI	GCTCTTC	1 cut(s)	1161
SaqAI	TTAA	5 cut(s)	315, 665, 1149, 1176, 1281
SatI	GCNGC	2 cut(s)	236, 408
Sau3AI	GATC	6 cut(s)	23, 333, 567, 656, 927, 1296
Sau96I	GGNCC	5 cut(s)	168, 196, 308, 444, 967
ScrFI	CCNGG	3 cut(s)	292, 573, 965
SduI	GDGCHC	1 cut(s)	1173
SfaNI	GCATC	2 cut(s)	75, 244
SfcI	CTRYAG	2 cut(s)	481, 1245
Sfr274I	CTCGAG	1 cut(s)	109
SinI	GGWCC	3 cut(s)	168, 444, 967
SlaI	CTCGAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	4 cut(s)	109, 428, 703, 734
SmoI	CTYRAG	4 cut(s)	109, 428, 703, 734
SsiI	CCGC	2 cut(s)	273, 447
SspMI	CTAG	4 cut(s)	200, 305, 606, 977
SstI	GAGCTC	1 cut(s)	1173
StyD4I	CCNGG	3 cut(s)	290, 571, 963
TaaI	ACNGT	1 cut(s)	542
TaqI	TCGA	2 cut(s)	110, 645
TaqII	GACCGA	1 cut(s)	156
TatI	WGTACW	1 cut(s)	1109
TfiI	GAWTC	3 cut(s)	117, 424, 893
Tru1I	TTAA	5 cut(s)	315, 665, 1149, 1176, 1281
Tru9I	TTAA	5 cut(s)	315, 665, 1149, 1176, 1281
TseI	GCWGC	2 cut(s)	235, 407
TspDTI	ATGAA	7 cut(s)	330, 454, 537, 593, 601, 640, 762
TspGWI	ACGGA	3 cut(s)	178, 611, 649
Tth111I	GACNNNGTC	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	992
VpaK11BI	GGWCC	3 cut(s)	168, 444, 967
VspI	ATTAAT	1 cut(s)	1281
XapI	RAATTY	2 cut(s)	821, 1021
XceI	RCATGY	3 cut(s)	41, 535, 698
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	4 cut(s)	200, 305, 606, 977
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.