Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

6148709 .. 6149077

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGATGAGTTCAGTAGAACAAGCAACCAAAAAAGGGCATACAGTTTTTGTCCCATACCCAGCACAAGGCCATGTTAACCCCATGATGCAGTTAGCCAAGCTTCTTCACTTAAGGGGCTTCCACATAACCTTTGTTAACACCAAGTTCAACCACAACCGTTTAATCTGGTCAAAAGGTCCCGACTCCGTTAAGGGTCTACCGGACTTTGTGTTCGAGACCATACCGGATGGGTTGCCTCCTTCAAATAAGGATGGAACCCAAGATATTCCAGCTTTATGTGACTCCATTAAGAAAACTTGTTTTGGTCCATTTAAAGAGCTGGTGGCTAGATCAATTCCTCATCTCAAGTGCCGCAAGTTACTTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

123

Amino Acids

13.62

Weight (kDa)

9.58

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	15 - 49	1e-06	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	196
AciI	CCGC	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	33, 65
AflII	CTTAAG	1 cut(s)	109
AgsI	TTSAA	2 cut(s)	148, 243
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
AluBI	AGCT	3 cut(s)	100, 272, 319
AluI	AGCT	3 cut(s)	100, 272, 319
Alw26I	GTCTC	1 cut(s)	209
AoxI	GGCC	1 cut(s)	67
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AspS9I	GGNCC	2 cut(s)	176, 305
AvaII	GGWCC	2 cut(s)	176, 305
BccI	CCATC	2 cut(s)	221, 245
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	327
BfrI	CTTAAG	1 cut(s)	109
BisI	GCNGC	1 cut(s)	352
BlsI	GCNGC	1 cut(s)	353
Bme18I	GGWCC	2 cut(s)	176, 305
BmgT120I	GGNCC	2 cut(s)	176, 305
BmiI	GGNNCC	2 cut(s)	178, 256
BmsI	GCATC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	209
BsaWI	WCCGGW	2 cut(s)	199, 223
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 65
BseGI	GGATG	2 cut(s)	232, 256
BseLI	CCNNNNNNNGG	2 cut(s)	33, 65
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	200, 224
BslFI	GGGAC	2 cut(s)	35, 162
BslI	CCNNNNNNNGG	2 cut(s)	33, 65
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	2 cut(s)	35, 162
BsnI	GGCC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	329
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	178, 256
BspTI	CTTAAG	1 cut(s)	109
BspTNI	GGTCTC	1 cut(s)	209
BssMI	GATC	1 cut(s)	329
Bst4CI	ACNGT	2 cut(s)	43, 158
BstAFI	CTTAAG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	232, 256
BstKTI	GATC	1 cut(s)	332
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	232, 256
Cfr13I	GGNCC	2 cut(s)	176, 305
CviAII	CATG	2 cut(s)	71, 82
CviJI	RGCY	7 cut(s)	69, 95, 100, 117, 272, 319, 326
CviKI_1	RGCY	7 cut(s)	69, 95, 100, 117, 272, 319, 326
DpnI	GATC	1 cut(s)	331
DpnII	GATC	1 cut(s)	329
DraI	TTTAAA	1 cut(s)	313
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	176, 305
EcoO109I	RGGNCCY	1 cut(s)	176
FaeI	CATG	2 cut(s)	74, 85
FaiI	YATR	7 cut(s)	39, 55, 72, 83, 125, 221, 277
FaqI	GGGAC	2 cut(s)	35, 162
FatI	CATG	2 cut(s)	70, 81
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	352
FokI	GGATG	2 cut(s)	239, 263
Fsp4HI	GCNGC	1 cut(s)	352
FspBI	CTAG	1 cut(s)	327
GluI	GCNGC	1 cut(s)	352
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	2 cut(s)	200, 224
Hin1II	CATG	2 cut(s)	74, 85
HincII	GTYRAC	2 cut(s)	76, 136
HindII	GTYRAC	2 cut(s)	76, 136
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	2 cut(s)	182, 281
HpaI	GTTAAC	2 cut(s)	76, 136
HpaII	CCGG	2 cut(s)	200, 224
Hpy166II	GTNNAC	3 cut(s)	76, 136, 197
Hpy188III	TCNNGA	2 cut(s)	179, 214
Hpy8I	GTNNAC	3 cut(s)	76, 136, 197
HpyAV	CCTTC	1 cut(s)	249
HpyCH4III	ACNGT	2 cut(s)	43, 158
HpyCH4V	TGCA	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	74, 85
KspAI	GTTAAC	2 cut(s)	76, 136
Kzo9I	GATC	1 cut(s)	329
LpnPI	CCDG	6 cut(s)	72, 151, 213, 237, 282, 305
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	327
MaeIII	GTNAC	2 cut(s)	278, 357
MalI	GATC	1 cut(s)	331
MboI	GATC	1 cut(s)	329
MboII	GAAGA	1 cut(s)	95
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	176, 275
MnlI	CCTC	2 cut(s)	246, 348
MseI	TTAA	7 cut(s)	75, 110, 135, 161, 189, 288, 312
MspCI	CTTAAG	1 cut(s)	109
MspI	CCGG	2 cut(s)	200, 224
NdeII	GATC	1 cut(s)	329
NlaIII	CATG	2 cut(s)	74, 85
NlaIV	GGNNCC	2 cut(s)	178, 256
NmuCI	GTSAC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	353
PleI	GAGTC	2 cut(s)	176, 275
PpsI	GAGTC	2 cut(s)	176, 275
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
PspFI	CCCAGC	1 cut(s)	58
PspN4I	GGNNCC	2 cut(s)	178, 256
PspPI	GGNCC	2 cut(s)	176, 305
PspPPI	RGGWCCY	1 cut(s)	176
SaqAI	TTAA	7 cut(s)	75, 110, 135, 161, 189, 288, 312
SatI	GCNGC	1 cut(s)	352
Sau3AI	GATC	1 cut(s)	329
Sau96I	GGNCC	2 cut(s)	176, 305
SchI	GAGTC	2 cut(s)	176, 275
SetI	ASST	5 cut(s)	102, 131, 178, 274, 321
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	2 cut(s)	176, 305
SmlI	CTYRAG	2 cut(s)	109, 344
SmoI	CTYRAG	2 cut(s)	109, 344
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	1 cut(s)	327
TaaI	ACNGT	2 cut(s)	43, 158
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	333
TauI	GCSGC	1 cut(s)	354
Tru1I	TTAA	7 cut(s)	75, 110, 135, 161, 189, 288, 312
Tru9I	TTAA	7 cut(s)	75, 110, 135, 161, 189, 288, 312
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspGWI	ACGGA	1 cut(s)	175
Vha464I	CTTAAG	1 cut(s)	109
VpaK11BI	GGWCC	2 cut(s)	176, 305
XmiI	GTMKAC	1 cut(s)	196
XspI	CTAG	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.