Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

22779530 .. 22782528

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30845

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCTTACACTTTCCCTTCTAGTTCCACTGGAAGCACAAAGCCTCATGCTGTTTGTACTAATGTTGCTTCTCAAAGTCACATTAAGGCGATGCTCAAACTAGCCAAAATCCTTCACCATAGAGGTTTTCACATTACCTTCGTCAACACAGAATCCTACCACAAGCGTTTTCTTGAATCTCAAGGACCCAATTCCCTCAATGGCTTACCTGATTTTCGCTTTGAAACCCTTCCAGATTCAGATAAAAGTGCCCCCAGAAATCATCTGTTGGCTCCATTTCGTGACCTGTTGATGAAACTCAATGACACTACTCCTCCAGTGACTTGCATTGTTTCGAATGGCTTCATGTCCACATTCACAATCACTGCTGCAGATGAACTAGATATTCCTATTGCATTGTTCTACAGTTTTGCTGCTTGCAGCTTCATGGGATTAAAGCAATTCCGCACTTTGCGGGAAAAAGGCCTTGCACCACTTAAAGTGCTGGGCAGAGGCTGGAGGTTGCCGGAATTCGATTTGGAGCTGCTTTGGTTCCTTCTTTCATGTCGTCGTTGCTTCTGTGTCTGGTGTGCAGCGCTGGGTAGAGGCTGGAGGTTGTTGGAATTCAATTTGGAGCAGATCAGGTCTAGTGCTGCACGCGAGTCGAGTCTGCAGGCGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

220

Amino Acids

24.82

Weight (kDa)

9.19

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	639
AciI	CCGC	2 cut(s)	445, 454
AcsI	RAATTY	2 cut(s)	509, 602
AfaI	GTAC	1 cut(s)	58
AfeI	AGCGCT	1 cut(s)	576
AgsI	TTSAA	3 cut(s)	176, 224, 607
AluBI	AGCT	2 cut(s)	423, 523
AluI	AGCT	2 cut(s)	423, 523
AlwNI	CAGNNNCTG	1 cut(s)	495
Aor51HI	AGCGCT	1 cut(s)	576
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	6 cut(s)	368, 413, 420, 523, 572, 632
ApoI	RAATTY	2 cut(s)	509, 602
Asp700I	GAANNNNTTC	2 cut(s)	228, 341
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	253
BbvI	GCAGC	6 cut(s)	355, 400, 432, 510, 584, 619
BcgI	CGANNNNNNTGC	2 cut(s)	624, 658
BfaI	CTAG	5 cut(s)	21, 101, 380, 627, 661
BfmI	CTRYAG	3 cut(s)	369, 403, 650
BfoI	RGCGCY	1 cut(s)	578
BisI	GCNGC	6 cut(s)	369, 414, 421, 524, 573, 633
BlsI	GCNGC	6 cut(s)	370, 415, 422, 525, 574, 634
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	3 cut(s)	187, 273, 533
BmsI	GCATC	1 cut(s)	81
BpmI	CTGGAG	3 cut(s)	300, 517, 610
Bpu14I	TTCGAA	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bse1I	ACTGG	2 cut(s)	34, 317
BseNI	ACTGG	2 cut(s)	34, 317
BseRI	GAGGAG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	6 cut(s)	355, 400, 432, 510, 584, 619
BseYI	CCCAGC	2 cut(s)	484, 577
BsgI	GTGCAG	2 cut(s)	591, 618
Bsh1236I	CGCG	1 cut(s)	639
BshFI	GGCC	1 cut(s)	465
BsiSI	CCGG	1 cut(s)	506
BsnI	GGCC	1 cut(s)	465
Bsp119I	TTCGAA	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	618, 657
BspACI	CCGC	2 cut(s)	445, 454
BspANI	GGCC	1 cut(s)	465
BspFNI	CGCG	1 cut(s)	639
BspLI	GGNNCC	3 cut(s)	187, 273, 533
BspMAI	CTGCAG	2 cut(s)	373, 654
BspT104I	TTCGAA	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	34, 317
BssMI	GATC	2 cut(s)	618, 657
Bst4CI	ACNGT	1 cut(s)	407
BstBI	TTCGAA	1 cut(s)	335
BstC8I	GCNNGC	3 cut(s)	418, 637, 654
BstFNI	CGCG	1 cut(s)	639
BstH2I	RGCGCY	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	2 cut(s)	621, 660
BstMBI	GATC	2 cut(s)	618, 657
BstSFI	CTRYAG	3 cut(s)	369, 403, 650
BstSLI	GKGCMC	1 cut(s)	253
BstUI	CGCG	1 cut(s)	639
BstV1I	GCAGC	6 cut(s)	355, 400, 432, 510, 584, 619
BsuRI	GGCC	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	27, 324, 363
Cac8I	GCNNGC	3 cut(s)	418, 637, 654
CaiI	CAGNNNCTG	1 cut(s)	495
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	4 cut(s)	47, 346, 427, 543
CviQI	GTAC	1 cut(s)	57
DpnI	GATC	2 cut(s)	620, 659
DpnII	GATC	2 cut(s)	618, 657
Eco147I	AGGCCT	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	185
Eco47III	AGCGCT	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	185
EcoRI	GAATTC	2 cut(s)	509, 602
FaeI	CATG	4 cut(s)	50, 349, 430, 546
FaiI	YATR	5 cut(s)	48, 120, 347, 428, 544
FatI	CATG	4 cut(s)	46, 345, 426, 542
FauI	CCCGC	1 cut(s)	447
Fnu4HI	GCNGC	6 cut(s)	369, 414, 421, 524, 573, 633
Fsp4HI	GCNGC	6 cut(s)	369, 414, 421, 524, 573, 633
FspBI	CTAG	5 cut(s)	21, 101, 380, 627, 661
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	6 cut(s)	369, 414, 421, 524, 573, 633
GsaI	CCCAGC	2 cut(s)	488, 581
GsuI	CTGGAG	3 cut(s)	300, 517, 610
HaeII	RGCGCY	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	1 cut(s)	506
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	4 cut(s)	50, 349, 430, 546
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	5 cut(s)	152, 176, 236, 641, 646
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	145, 351
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	3 cut(s)	173, 233, 281
Hpy8I	GTNNAC	2 cut(s)	145, 351
Hpy99I	CGWCG	1 cut(s)	552
HpyAV	CCTTC	5 cut(s)	27, 122, 148, 239, 545
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	8 cut(s)	327, 371, 395, 420, 470, 572, 635, 652
Hsp92II	CATG	4 cut(s)	50, 349, 430, 546
HspAI	GCGC	1 cut(s)	575
Kzo9I	GATC	2 cut(s)	618, 657
LmnI	GCTCC	3 cut(s)	277, 520, 613
Lsp1109I	GCAGC	6 cut(s)	355, 400, 432, 510, 584, 619
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	5 cut(s)	21, 101, 380, 627, 661
MaeIII	GTNAC	3 cut(s)	77, 281, 319
MalI	GATC	2 cut(s)	620, 659
MboI	GATC	2 cut(s)	618, 657
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	5 cut(s)	190, 440, 509, 602, 607
MlyI	GAGTC	2 cut(s)	650, 655
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	8 cut(s)	54, 116, 206, 324, 485, 492, 578, 585
MroXI	GAANNNNTTC	2 cut(s)	228, 341
MseI	TTAA	3 cut(s)	84, 434, 477
MspI	CCGG	1 cut(s)	506
MvnI	CGCG	1 cut(s)	639
NdeII	GATC	2 cut(s)	618, 657
NlaIII	CATG	4 cut(s)	50, 349, 430, 546
NlaIV	GGNNCC	3 cut(s)	187, 273, 533
NmuCI	GTSAC	3 cut(s)	77, 281, 319
NspV	TTCGAA	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	465
PdmI	GAANNNNTTC	2 cut(s)	228, 341
PfeI	GAWTC	3 cut(s)	152, 176, 236
PkrI	GCNGC	6 cut(s)	370, 415, 422, 525, 574, 634
PleI	GAGTC	2 cut(s)	649, 654
PpsI	GAGTC	2 cut(s)	649, 654
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
PspFI	CCCAGC	2 cut(s)	484, 577
PspN4I	GGNNCC	3 cut(s)	187, 273, 533
PspPI	GGNCC	1 cut(s)	185
PspPPI	RGGWCCY	1 cut(s)	185
PstI	CTGCAG	2 cut(s)	373, 654
PstNI	CAGNNNCTG	1 cut(s)	495
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	3 cut(s)	84, 434, 477
SatI	GCNGC	6 cut(s)	369, 414, 421, 524, 573, 633
Sau3AI	GATC	2 cut(s)	618, 657
Sau96I	GGNCC	1 cut(s)	185
SchI	GAGTC	2 cut(s)	650, 655
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	9 cut(s)	127, 140, 211, 288, 425, 503, 525, 596, 626
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	3 cut(s)	369, 403, 650
SfuI	TTCGAA	1 cut(s)	335
SinI	GGWCC	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	5 cut(s)	190, 440, 509, 602, 607
SseBI	AGGCCT	1 cut(s)	465
SsiI	CCGC	2 cut(s)	445, 454
SspMI	CTAG	5 cut(s)	21, 101, 380, 627, 661
StuI	AGGCCT	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	3 cut(s)	335, 513, 644
TasI	AATT	5 cut(s)	190, 440, 509, 602, 607
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	152, 176, 236
Tru1I	TTAA	3 cut(s)	84, 434, 477
Tru9I	TTAA	3 cut(s)	84, 434, 477
TscAI	CASTG	3 cut(s)	34, 324, 370
TseFI	GTSAC	3 cut(s)	77, 281, 319
TseI	GCWGC	6 cut(s)	368, 413, 420, 523, 572, 632
Tsp45I	GTSAC	3 cut(s)	77, 281, 319
TspDTI	ATGAA	5 cut(s)	308, 334, 390, 415, 531
TspRI	CASTG	3 cut(s)	34, 324, 370
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	509, 602
XmnI	GAANNNNTTC	2 cut(s)	228, 341
XspI	CTAG	5 cut(s)	21, 101, 380, 627, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.