Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014086.1

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

1001 .. 1453

Gene Structure 453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014086.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atggcagagactaagccacatgccgtatgcatcccttacccagctcaaggtcacataaaccctttgctcaagttagccaagctcctccgctacaagggcttccacatcaccttcgtcaacattgagtacaaccacaagcgcctcctcaactcccgaggtcccaacgccctcaacaacctccccccttttcagttcaagaccatccccgatgggctccctcctaccaactcgaatgccacgcaggacatactggctctgtgtaagtccaccaggaagtactgccttcctcacttcagggagcttcttgggaagctaaactctgagccggactcaccgccggtgagctgcgtggtttatgatggtgtcatgagcttcactcttgatgcggccgaggaactggggatgccagaagtgcttttctggactactagtgcttgcgggttcatgtgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

150

Amino Acids

16.72

Weight (kDa)

8.22

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	88, 335, 386, 438
AcoI	YGGCCR	1 cut(s)	387
AcuI	CTGAAG	1 cut(s)	277
AfaI	GTAC	2 cut(s)	128, 278
AfiI	CCNNNNNNNGG	2 cut(s)	47, 94
AgsI	TTSAA	1 cut(s)	196
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	6 cut(s)	44, 82, 301, 313, 345, 372
AluI	AGCT	6 cut(s)	44, 82, 301, 313, 345, 372
Alw26I	GTCTC	1 cut(s)	2
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	1 cut(s)	387
ApeKI	GCWGC	1 cut(s)	345
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	3 cut(s)	100, 324, 352
AvaI	CYCGRG	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	3 cut(s)	203, 209, 353
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	271
BcoDI	GTCTC	1 cut(s)	2
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	2 cut(s)	346, 387
BlsI	GCNGC	2 cut(s)	347, 388
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	153
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	2 cut(s)	160, 215
BmrFI	CCNGG	1 cut(s)	271
BmrI	ACTGGG	1 cut(s)	407
BmsI	GCATC	3 cut(s)	39, 373, 393
BmuI	ACTGGG	1 cut(s)	407
BplI	GAGNNNNNCTC	4 cut(s)	314, 346, 361, 393
BpuEI	CTTGAG	2 cut(s)	30, 53
BsaJI	CCNNGG	2 cut(s)	154, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 94
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	2 cut(s)	255, 402
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	154, 390
BseGI	GGATG	3 cut(s)	30, 201, 408
BseLI	CCNNNNNNNGG	2 cut(s)	47, 94
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	255, 402
BseRI	GAGGAG	2 cut(s)	74, 134
BseX3I	CGGCCG	1 cut(s)	387
BseXI	GCAGC	1 cut(s)	332
BseYI	CCCAGC	1 cut(s)	40
Bsh1285I	CGRYCG	1 cut(s)	390
BshFI	GGCC	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	390
BsiHKCI	CYCGRG	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	326, 338
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	47, 94
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	389
BsoBI	CYCGRG	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	216
BspACI	CCGC	4 cut(s)	88, 335, 386, 438
BspANI	GGCC	1 cut(s)	389
BspCNI	CTCAG	1 cut(s)	313
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	160, 215
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	255, 402
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	154, 390
Bst2UI	CCWGG	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	12, 321
BstF5I	GGATG	3 cut(s)	30, 201, 408
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	2
BstMCI	CGRYCG	1 cut(s)	390
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 412
BstNI	CCWGG	1 cut(s)	271
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	332
BstZI	CGGCCG	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	389
BtsCI	GGATG	3 cut(s)	30, 201, 408
Cac8I	GCNNGC	1 cut(s)	436
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	127, 277
CviAII	CATG	3 cut(s)	20, 367, 445
CviQI	GTAC	2 cut(s)	127, 277
DdeI	CTNAG	2 cut(s)	12, 321
EaeI	YGGCCR	1 cut(s)	387
EagI	CGGCCG	1 cut(s)	387
EclXI	CGGCCG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	158
Eco52I	CGGCCG	1 cut(s)	387
Eco57I	CTGAAG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	153
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	269
EcoT22I	ATGCAT	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	216
FaeI	CATG	3 cut(s)	23, 370, 448
FaiI	YATR	7 cut(s)	21, 28, 56, 248, 357, 368, 446
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	19, 366, 444
FauI	CCCGC	1 cut(s)	431
Fnu4HI	GCNGC	2 cut(s)	346, 387
FokI	GGATG	3 cut(s)	17, 188, 415
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	2 cut(s)	346, 387
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	346, 387
GsaI	CCCAGC	1 cut(s)	44
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	389
HapII	CCGG	2 cut(s)	326, 338
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	23, 370, 448
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	2 cut(s)	326, 338
HphI	GGTGA	3 cut(s)	100, 324, 352
Hpy166II	GTNNAC	2 cut(s)	118, 267
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	5 cut(s)	153, 196, 367, 380, 421
Hpy8I	GTNNAC	2 cut(s)	118, 267
HpyAV	CCTTC	2 cut(s)	121, 293
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 412
HpyF3I	CTNAG	2 cut(s)	12, 321
Hsp92II	CATG	3 cut(s)	23, 370, 448
HspAI	GCGC	1 cut(s)	139
LmnI	GCTCC	3 cut(s)	87, 219, 298
Lsp1109I	GCAGC	1 cut(s)	332
LweI	GCATC	3 cut(s)	39, 373, 393
MaeI	CTAG	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	9 cut(s)	95, 149, 152, 155, 179, 188, 228, 297, 385
Mph1103I	ATGCAT	1 cut(s)	32
MseI	TTAA	1 cut(s)	451
MspI	CCGG	2 cut(s)	326, 338
MspR9I	CCNGG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	96, 412
NlaIII	CATG	3 cut(s)	23, 370, 448
NlaIV	GGNNCC	2 cut(s)	160, 215
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	1 cut(s)	50
NsiI	ATGCAT	1 cut(s)	32
NspI	RCATGY	1 cut(s)	23
PagI	TCATGA	1 cut(s)	366
PctI	GAATGC	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	347, 388
PleI	GAGTC	1 cut(s)	323
PpsI	GAGTC	1 cut(s)	323
PpuMI	RGGWCCY	1 cut(s)	158
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	160, 215
PspPI	GGNCC	1 cut(s)	158
PspPPI	RGGWCCY	1 cut(s)	158
RsaI	GTAC	2 cut(s)	128, 278
RsaNI	GTAC	2 cut(s)	127, 277
SaqAI	TTAA	1 cut(s)	451
SatI	GCNGC	2 cut(s)	346, 387
Sau96I	GGNCC	1 cut(s)	158
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	3 cut(s)	39, 373, 393
SgrAI	CRCCGGYG	1 cut(s)	337
SinI	GGWCC	1 cut(s)	158
SmlI	CTYRAG	2 cut(s)	45, 68
SmoI	CTYRAG	2 cut(s)	45, 68
SpeI	ACTAGT	1 cut(s)	428
SsiI	CCGC	4 cut(s)	88, 335, 386, 438
SspMI	CTAG	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	269
TaqI	TCGA	1 cut(s)	230
TatI	WGTACW	2 cut(s)	126, 276
TauI	GCSGC	1 cut(s)	389
Tru1I	TTAA	1 cut(s)	451
Tru9I	TTAA	1 cut(s)	451
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	345
Tsp45I	GTSAC	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	158
XceI	RCATGY	1 cut(s)	23
XspI	CTAG	1 cut(s)	429
ZrmI	AGTACT	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.