Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

45242450 .. 45243265

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1370900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGTTTAACTAAGCCACATGCAGTTTTCATACCATTTCCAGCACAAGGTCACATAAACCCGATGCAGCAATTAGCTAAACTCCTCCACTACAAAGGCTTCCACATAACATTTGTCAACACAGAGGTCACTCACAAGCGCCTCATTAACTCCCTAGGTGCCAACTCCCTCGACGGCCTTCCCACCTTCCGATTCGAGACCATTCCCGACGGCCTCCCGGCAACTCATCCCCGGGACGTGCCATCACTCTGCGTTTCCACAAACAAAACCGGCTTGGGGCCATTTAGGGAGCTTTTGAAAAAGCTCAACTCTTCACCCAATTCACCACCTGTGACTTGTATAATTGCTGATGGTGTTATGACCTTCACTCTTGATGCTGCCCATGAATTGGGAATTCCTGAAGTGCTTTTCTGGACAACAAGTGCTTGTGGCTTCTTGGCCTACGCTCAATATCACCGTCTTATTGAAGAGGGTCTCACCCCTCTTAAAGTCATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

167

Amino Acids

18.19

Weight (kDa)

7.81

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	9 - 47	2.9e-06	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	388
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	420
AfiI	CCNNNNNNNGG	3 cut(s)	47, 276, 388
AgsI	TTSAA	2 cut(s)	298, 467
AjiI	CACGTC	1 cut(s)	238
AluBI	AGCT	3 cut(s)	77, 292, 304
AluI	AGCT	3 cut(s)	77, 292, 304
Alw26I	GTCTC	2 cut(s)	191, 479
Ama87I	CYCGRG	1 cut(s)	231
AoxI	GGCC	4 cut(s)	175, 211, 278, 438
ApeKI	GCWGC	2 cut(s)	67, 377
ApoI	RAATTY	1 cut(s)	393
AspA2I	CCTAGG	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	278
AsuC2I	CCSGG	3 cut(s)	218, 232, 233
AsuHPI	GGTGA	4 cut(s)	306, 315, 446, 469
AvaI	CYCGRG	1 cut(s)	231
AvrII	CCTAGG	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	158
BbvI	GCAGC	2 cut(s)	79, 364
BccI	CCATC	2 cut(s)	250, 344
BceAI	ACGGC	2 cut(s)	190, 226
BcnI	CCSGG	3 cut(s)	218, 232, 233
BcoDI	GTCTC	2 cut(s)	191, 479
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	2 cut(s)	68, 378
BlnI	CCTAGG	1 cut(s)	154
BlsI	GCNGC	2 cut(s)	69, 379
Bme1390I	CCNGG	3 cut(s)	218, 232, 233
BmeT110I	CYCGRG	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	160, 279
BmrFI	CCNGG	3 cut(s)	218, 232, 233
BmsI	GCATC	2 cut(s)	54, 364
BpuMI	CCSGG	3 cut(s)	218, 232, 233
BsaI	GGTCTC	2 cut(s)	191, 479
BsaJI	CCNNGG	3 cut(s)	154, 230, 231
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 276, 388
Bse118I	RCCGGY	1 cut(s)	269
BseDI	CCNNGG	3 cut(s)	154, 230, 231
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	47, 276, 388
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	79, 364
BshFI	GGCC	4 cut(s)	177, 213, 280, 440
BshNI	GGYRCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	3 cut(s)	218, 232, 270
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	3 cut(s)	47, 276, 388
BsmAI	GTCTC	2 cut(s)	191, 479
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	4 cut(s)	177, 213, 280, 440
Bso31I	GGTCTC	2 cut(s)	191, 479
BsoBI	CYCGRG	1 cut(s)	231
BspANI	GGCC	4 cut(s)	177, 213, 280, 440
BspHI	TCATGA	1 cut(s)	497
BspLI	GGNNCC	2 cut(s)	160, 279
BspT107I	GGYRCC	1 cut(s)	158
BspTNI	GGTCTC	2 cut(s)	191, 479
BsrFI	RCCGGY	1 cut(s)	269
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	3 cut(s)	154, 230, 231
BssT1I	CCWWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	2 cut(s)	316, 462
BstDEI	CTNAG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	226
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	191, 479
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	3 cut(s)	216, 230, 231
BstV1I	GCAGC	2 cut(s)	79, 364
BsuRI	GGCC	4 cut(s)	177, 213, 280, 440
BtrI	CACGTC	1 cut(s)	238
BtsCI	GGATG	1 cut(s)	226
CciI	TCATGA	1 cut(s)	497
CfoI	GCGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	278
Cfr9I	CCCGGG	1 cut(s)	231
CviAII	CATG	3 cut(s)	20, 383, 498
DdeI	CTNAG	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	316, 462
EarI	CTCTTC	2 cut(s)	316, 462
Eco130I	CCWWGG	1 cut(s)	154
Eco31I	GGTCTC	2 cut(s)	191, 479
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	1 cut(s)	231
EcoRI	GAATTC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	3 cut(s)	23, 386, 501
FaiI	YATR	8 cut(s)	21, 32, 56, 107, 341, 359, 384, 499
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	3 cut(s)	19, 382, 497
Fnu4HI	GCNGC	2 cut(s)	68, 378
FokI	GGATG	1 cut(s)	213
Fsp4HI	GCNGC	2 cut(s)	68, 378
FspBI	CTAG	1 cut(s)	155
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	2 cut(s)	68, 378
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	4 cut(s)	177, 213, 280, 440
HapII	CCGG	3 cut(s)	218, 232, 270
HhaI	GCGC	1 cut(s)	141
Hin1II	CATG	3 cut(s)	23, 386, 501
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	1 cut(s)	192
HpaII	CCGG	3 cut(s)	218, 232, 270
HphI	GGTGA	4 cut(s)	306, 315, 446, 469
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	6 cut(s)	196, 206, 371, 398, 412, 498
Hpy8I	GTNNAC	1 cut(s)	118
Hpy99I	CGWCG	2 cut(s)	176, 212
HpyAV	CCTTC	3 cut(s)	188, 196, 373
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	2 cut(s)	23, 67
HpyF3I	CTNAG	1 cut(s)	12
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	23, 386, 501
HspAI	GCGC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	7 cut(s)	54, 231, 245, 283, 342, 397, 411
Lsp1109I	GCAGC	2 cut(s)	79, 364
LweI	GCATC	2 cut(s)	54, 364
MaeI	CTAG	1 cut(s)	155
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	3 cut(s)	50, 127, 331
MboII	GAAGA	2 cut(s)	303, 479
MluCI	AATT	5 cut(s)	71, 319, 342, 386, 393
MnlI	CCTC	7 cut(s)	95, 118, 152, 179, 224, 463, 492
MseI	TTAA	3 cut(s)	8, 147, 486
MspI	CCGG	3 cut(s)	218, 232, 270
MspR9I	CCNGG	3 cut(s)	218, 232, 233
NciI	CCSGG	3 cut(s)	218, 232, 233
NlaIII	CATG	3 cut(s)	23, 386, 501
NlaIV	GGNNCC	2 cut(s)	160, 279
NmuCI	GTSAC	3 cut(s)	50, 127, 331
NspI	RCATGY	1 cut(s)	23
PagI	TCATGA	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	388
PkrI	GCNGC	2 cut(s)	69, 379
PspN4I	GGNNCC	2 cut(s)	160, 279
PspPI	GGNCC	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	8, 147, 486
SatI	GCNGC	2 cut(s)	68, 378
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	3 cut(s)	218, 232, 233
SfaNI	GCATC	2 cut(s)	54, 364
SmaI	CCCGGG	1 cut(s)	233
Sse9I	AATT	5 cut(s)	71, 319, 342, 386, 393
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	216, 230, 231
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	2 cut(s)	171, 195
TasI	AATT	5 cut(s)	71, 319, 342, 386, 393
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	3 cut(s)	8, 147, 486
Tru9I	TTAA	3 cut(s)	8, 147, 486
TseFI	GTSAC	3 cut(s)	50, 127, 331
TseI	GCWGC	2 cut(s)	67, 377
Tsp45I	GTSAC	3 cut(s)	50, 127, 331
TspDTI	ATGAA	3 cut(s)	19, 399, 486
TspMI	CCCGGG	1 cut(s)	231
Van91I	CCANNNNNTGG	1 cut(s)	388
XapI	RAATTY	1 cut(s)	393
XceI	RCATGY	1 cut(s)	23
XmaI	CCCGGG	1 cut(s)	231
XmaJI	CCTAGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.