Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8020420.1

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

37 .. 539

Gene Structure 503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8020420.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 503 bp

atggcttacactttcccttctagttccactggaagcacaaagcctcatgctgtttgtactaatgttgcttctcaaagtcacattaaggcgatgctcaaactagccaaaatccttcaccatagaggttttcacattaccttcgtcaacacagaatcctaccacaagcgttttcttgaatctcaaggacccaattccctcaatggcttacctgattttcgctttgaaacccttccagattcagataaaagtgcccccagaaatcatctgttggctccatttcgtgacctgttgatgaaactcaataacactactcctccagtgacttgcattgtttcgaatggcttcatgtccacattcacaatcactgctgcagatgaactagatattcctattgcattgttctacagttttgctgcttgcagcttcatgggattaaagcaattccgcactttgcgggaaaaaggccttgcaccacttaaaggtaacttatatgctttaatata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

167

Amino Acids

18.54

Weight (kDa)

9.4

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	445, 454
AfaI	GTAC	1 cut(s)	58
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	2 cut(s)	176, 224
AluBI	AGCT	1 cut(s)	423
AluI	AGCT	1 cut(s)	423
AoxI	GGCC	1 cut(s)	463
ApeKI	GCWGC	3 cut(s)	368, 413, 420
Asp700I	GAANNNNTTC	2 cut(s)	228, 341
AspS9I	GGNCC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	107
AsuII	TTCGAA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	253
BbvI	GCAGC	3 cut(s)	355, 400, 432
BfaI	CTAG	3 cut(s)	21, 101, 380
BfmI	CTRYAG	2 cut(s)	369, 403
BisI	GCNGC	3 cut(s)	369, 414, 421
BlsI	GCNGC	3 cut(s)	370, 415, 422
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	2 cut(s)	187, 273
BmsI	GCATC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	165
BsaXI	ACNNNNNCTCC	2 cut(s)	298, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse1I	ACTGG	2 cut(s)	34, 317
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseNI	ACTGG	2 cut(s)	34, 317
BseRI	GAGGAG	1 cut(s)	303
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	355, 400, 432
BshFI	GGCC	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	479
BsnI	GGCC	1 cut(s)	465
Bsp119I	TTCGAA	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	253
BspACI	CCGC	2 cut(s)	445, 454
BspANI	GGCC	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	187, 273
BspMAI	CTGCAG	1 cut(s)	373
BspT104I	TTCGAA	1 cut(s)	335
BsrI	ACTGG	2 cut(s)	34, 317
Bst4CI	ACNGT	1 cut(s)	407
BstBI	TTCGAA	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	418
BstSFI	CTRYAG	2 cut(s)	369, 403
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	3 cut(s)	355, 400, 432
BsuRI	GGCC	1 cut(s)	465
BtgZI	GCGATG	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	3 cut(s)	27, 324, 363
Cac8I	GCNNGC	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	3 cut(s)	47, 346, 427
CviJI	RGCY	8 cut(s)	5, 43, 104, 204, 272, 342, 423, 465
CviKI_1	RGCY	8 cut(s)	5, 43, 104, 204, 272, 342, 423, 465
CviQI	GTAC	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	185
FaeI	CATG	3 cut(s)	50, 349, 430
FaiI	YATR	7 cut(s)	48, 120, 347, 428, 490, 492, 502
FatI	CATG	3 cut(s)	46, 345, 426
FauI	CCCGC	1 cut(s)	447
Fnu4HI	GCNGC	3 cut(s)	369, 414, 421
Fsp4HI	GCNGC	3 cut(s)	369, 414, 421
FspBI	CTAG	3 cut(s)	21, 101, 380
GluI	GCNGC	3 cut(s)	369, 414, 421
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	465
Hin1II	CATG	3 cut(s)	50, 349, 430
HincII	GTYRAC	1 cut(s)	145
HindII	GTYRAC	1 cut(s)	145
HinfI	GANTC	3 cut(s)	152, 176, 236
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	145, 351
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	3 cut(s)	173, 233, 281
Hpy8I	GTNNAC	2 cut(s)	145, 351
HpyAV	CCTTC	4 cut(s)	27, 122, 148, 239
HpyCH4III	ACNGT	1 cut(s)	407
HpyCH4V	TGCA	5 cut(s)	327, 371, 395, 420, 470
Hsp92II	CATG	3 cut(s)	50, 349, 430
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	6 cut(s)	15, 222, 246, 268, 299, 330
Lsp1109I	GCAGC	3 cut(s)	355, 400, 432
LweI	GCATC	1 cut(s)	81
MaeI	CTAG	3 cut(s)	21, 101, 380
MaeIII	GTNAC	4 cut(s)	77, 281, 319, 482
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	2 cut(s)	190, 440
MnlI	CCTC	4 cut(s)	54, 116, 206, 324
MroXI	GAANNNNTTC	2 cut(s)	228, 341
MseI	TTAA	4 cut(s)	84, 434, 477, 497
NlaIII	CATG	3 cut(s)	50, 349, 430
NlaIV	GGNNCC	2 cut(s)	187, 273
NmuCI	GTSAC	3 cut(s)	77, 281, 319
NspV	TTCGAA	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	465
PdmI	GAANNNNTTC	2 cut(s)	228, 341
PfeI	GAWTC	3 cut(s)	152, 176, 236
PkrI	GCNGC	3 cut(s)	370, 415, 422
PpuMI	RGGWCCY	1 cut(s)	185
Psp5II	RGGWCCY	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	187, 273
PspPI	GGNCC	1 cut(s)	185
PspPPI	RGGWCCY	1 cut(s)	185
PstI	CTGCAG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	4 cut(s)	84, 434, 477, 497
SatI	GCNGC	3 cut(s)	369, 414, 421
Sau96I	GGNCC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	6 cut(s)	127, 140, 211, 288, 425, 484
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	2 cut(s)	369, 403
SfuI	TTCGAA	1 cut(s)	335
SinI	GGWCC	1 cut(s)	185
SmlI	CTYRAG	1 cut(s)	180
SmoI	CTYRAG	1 cut(s)	180
Sse9I	AATT	2 cut(s)	190, 440
SseBI	AGGCCT	1 cut(s)	465
SsiI	CCGC	2 cut(s)	445, 454
SspMI	CTAG	3 cut(s)	21, 101, 380
StuI	AGGCCT	1 cut(s)	465
TaaI	ACNGT	1 cut(s)	407
TaqI	TCGA	1 cut(s)	335
TasI	AATT	2 cut(s)	190, 440
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	152, 176, 236
Tru1I	TTAA	4 cut(s)	84, 434, 477, 497
Tru9I	TTAA	4 cut(s)	84, 434, 477, 497
TscAI	CASTG	3 cut(s)	34, 324, 370
TseFI	GTSAC	3 cut(s)	77, 281, 319
TseI	GCWGC	3 cut(s)	368, 413, 420
Tsp45I	GTSAC	3 cut(s)	77, 281, 319
TspDTI	ATGAA	4 cut(s)	308, 334, 390, 415
TspRI	CASTG	3 cut(s)	34, 324, 370
VpaK11BI	GGWCC	1 cut(s)	185
XmnI	GAANNNNTTC	2 cut(s)	228, 341
XspI	CTAG	3 cut(s)	21, 101, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.