Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000258.1

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Reverse (-)

329387 .. 330516

Gene Structure 1130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000258.1_g000077.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggagcggcaggggatcaacgatgattttgctgacctggcggatgacgacgactgcaagggtgagtttctgccgccggatgactggtggccgtggcgagagggtctgggcttaattggcgtggggaggacagtcaaaggcaataagcctcatgttgtctgcattcctttgccatttcagagccacataaaggcaatgcttcagttagctcaactcctccaccacagaggttttcatataacctttgtcaacacagagttcaaccacaggcgctttcttaaatctcttggacccaactctcttgatcactttcctgattttcggtttgaaactattccagatagccttccgagttcagatgaaaaggactcccaagacaccactttggtctttaaatccgtcagaaaacatttattggctccgttccgtaacctcctcaacaaactgaatggcaatataaatcttccggtgactggcattgtctcggatggcttcctgacattcaccatcacagttgccaaagaacttgaaattcctatagcgcagttctttactttggccgcagttggattcatgagcttcaaaatatttcccactttggtggaaaaaggatttgcaccccttaaaggtaatgaaagcattatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

215

Amino Acids

24.24

Weight (kDa)

6.05

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	7
AciI	CCGC	4 cut(s)	7, 41, 74, 561
AclWI	GGATC	1 cut(s)	23
AcoI	YGGCCR	2 cut(s)	89, 558
AcsI	RAATTY	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	185
AfiI	CCNNNNNNNGG	3 cut(s)	190, 473, 626
AgsI	TTSAA	4 cut(s)	262, 329, 530, 583
AjnI	CCWGG	1 cut(s)	36
AleI	CACNNNNGTG	1 cut(s)	599
AluBI	AGCT	2 cut(s)	209, 579
AluI	AGCT	2 cut(s)	209, 579
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	2 cut(s)	89, 558
ApoI	RAATTY	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	333
AspLEI	GCGC	2 cut(s)	273, 544
AspS9I	GGNCC	1 cut(s)	290
AsuHPI	GGTGA	3 cut(s)	74, 481, 496
AvaII	GGWCC	1 cut(s)	290
BccI	CCATC	2 cut(s)	482, 515
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BciT130I	CCWGG	1 cut(s)	38
BclI	TGATCA	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	487
BfmI	CTRYAG	1 cut(s)	537
BfoI	RGCGCY	1 cut(s)	274
BisI	GCNGC	3 cut(s)	8, 74, 561
BlsI	GCNGC	3 cut(s)	9, 75, 562
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	290
BmiI	GGNNCC	2 cut(s)	292, 420
BmrFI	CCNGG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	466
Bsc4I	CCNNNNNNNGG	3 cut(s)	190, 473, 626
Bse1I	ACTGG	2 cut(s)	89, 478
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	3 cut(s)	49, 85, 493
BseLI	CCNNNNNNNGG	3 cut(s)	190, 473, 626
BseMI	GCAATG	1 cut(s)	201
BseNI	ACTGG	2 cut(s)	89, 478
BseRI	GAGGAG	2 cut(s)	206, 425
BshFI	GGCC	2 cut(s)	91, 560
BsiSI	CCGG	2 cut(s)	77, 467
BslI	CCNNNNNNNGG	3 cut(s)	190, 473, 626
BsmAI	GTCTC	1 cut(s)	487
BsmI	GAATGC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	91, 560
Bsp143I	GATC	2 cut(s)	15, 304
BspACI	CCGC	4 cut(s)	7, 41, 74, 561
BspANI	GGCC	2 cut(s)	91, 560
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	292, 420
BspPI	GGATC	1 cut(s)	23
BsrBI	CCGCTC	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	89, 478
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	2 cut(s)	15, 304
Bst2UI	CCWGG	1 cut(s)	38
Bst4CI	ACNGT	2 cut(s)	133, 514
BstDSI	CCRYGG	1 cut(s)	92
BstF5I	GGATG	3 cut(s)	49, 85, 493
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	2 cut(s)	273, 544
BstKTI	GATC	2 cut(s)	18, 307
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	2 cut(s)	15, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 117
BstNI	CCWGG	1 cut(s)	38
BstSCI	CCNGG	1 cut(s)	36
BstSFI	CTRYAG	1 cut(s)	537
BstXI	CCANNNNNNTGG	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	91, 560
BtgI	CCRYGG	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	49, 85, 493
CciI	TCATGA	1 cut(s)	573
CfoI	GCGC	2 cut(s)	273, 544
Cfr13I	GGNCC	1 cut(s)	290
CviAII	CATG	2 cut(s)	152, 574
DpnI	GATC	2 cut(s)	17, 306
DpnII	GATC	2 cut(s)	15, 304
DraI	TTTAAA	1 cut(s)	394
EaeI	YGGCCR	2 cut(s)	89, 558
EciI	GGCGGA	1 cut(s)	56
Eco47I	GGWCC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	36
FaeI	CATG	2 cut(s)	155, 577
FaiI	YATR	7 cut(s)	153, 188, 237, 239, 458, 539, 575
FatI	CATG	2 cut(s)	151, 573
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	3 cut(s)	8, 74, 561
FokI	GGATG	3 cut(s)	56, 92, 500
Fsp4HI	GCNGC	3 cut(s)	8, 74, 561
GlaI	GCGC	2 cut(s)	272, 543
GluI	GCNGC	3 cut(s)	8, 74, 561
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	91, 560
HapII	CCGG	2 cut(s)	77, 467
HhaI	GCGC	2 cut(s)	273, 544
Hin1II	CATG	2 cut(s)	155, 577
Hin6I	GCGC	2 cut(s)	271, 542
HinP1I	GCGC	2 cut(s)	271, 542
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	368, 570
HpaII	CCGG	2 cut(s)	77, 467
HphI	GGTGA	3 cut(s)	74, 481, 496
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	5 cut(s)	180, 351, 358, 404, 487
Hpy188III	TCNNGA	5 cut(s)	302, 314, 338, 496, 574
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	2 cut(s)	133, 514
HpyCH4V	TGCA	3 cut(s)	57, 162, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 117
Hsp92II	CATG	2 cut(s)	155, 577
HspAI	GCGC	2 cut(s)	271, 542
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	15, 304
LmnI	GCTCC	2 cut(s)	4, 424
MaeIII	GTNAC	2 cut(s)	428, 469
MalI	GATC	2 cut(s)	17, 306
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	2 cut(s)	15, 304
MboII	GAAGA	1 cut(s)	455
MluCI	AATT	2 cut(s)	114, 531
MlyI	GAGTC	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	547
MnlI	CCTC	7 cut(s)	94, 120, 159, 221, 227, 443, 446
MroXI	GAANNNNTTC	1 cut(s)	333
MseI	TTAA	4 cut(s)	113, 279, 393, 624
MslI	CAYNNNNRTG	1 cut(s)	599
MspI	CCGG	2 cut(s)	77, 467
MspR9I	CCNGG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	2 cut(s)	38, 117
NdeII	GATC	2 cut(s)	15, 304
NlaIII	CATG	2 cut(s)	155, 577
NlaIV	GGNNCC	2 cut(s)	292, 420
NmuCI	GTSAC	1 cut(s)	469
OliI	CACNNNNGTG	1 cut(s)	599
PagI	TCATGA	1 cut(s)	573
PctI	GAATGC	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	570
PkrI	GCNGC	3 cut(s)	9, 75, 562
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	36
PspGI	CCWGG	1 cut(s)	36
PspN4I	GGNNCC	2 cut(s)	292, 420
PspPI	GGNCC	1 cut(s)	290
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	4 cut(s)	113, 279, 393, 624
SatI	GCNGC	3 cut(s)	8, 74, 561
Sau3AI	GATC	2 cut(s)	15, 304
Sau96I	GGNCC	1 cut(s)	290
SchI	GAGTC	1 cut(s)	362
ScrFI	CCNGG	1 cut(s)	38
SetI	ASST	7 cut(s)	39, 211, 232, 245, 435, 581, 631
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	1 cut(s)	290
SmiMI	CAYNNNNRTG	1 cut(s)	599
Sse9I	AATT	2 cut(s)	114, 531
SsiI	CCGC	4 cut(s)	7, 41, 74, 561
SspI	AATATT	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	133, 514
TasI	AATT	2 cut(s)	114, 531
TauI	GCSGC	3 cut(s)	10, 76, 563
TfiI	GAWTC	1 cut(s)	570
Tru1I	TTAA	4 cut(s)	113, 279, 393, 624
Tru9I	TTAA	4 cut(s)	113, 279, 393, 624
TseFI	GTSAC	1 cut(s)	469
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	4 cut(s)	224, 375, 562, 648
TspGWI	ACGGA	3 cut(s)	388, 411, 416
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	1 cut(s)	531
XmnI	GAANNNNTTC	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.