Rroxscaffold_3G00221940

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000975
Physical Location & Seq
Forward (+)
4913777 .. 4915043
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00221940.1

Sequence Viewer

Length: 351 bp
ATGCTCAAGTTAGCCAAGCTACTCCACCACAAGGGCTTCCACATCACCTTCATCAACACCGAGTACAACCACAAGCGCCTCCTCAACTCCCGAGGCCCCAACGCCCTCGACGGTCTCCCTTGTTTTCAGTTCAAGACCGTTCCCGATGGGCTTCCTTCTACCGACTCAAATGCCATGCAGGACATACAGGCCCTTTGTGACTTCACTCTTGATGCGGCCGAGGAGCTTGGGGTGCCGGAAGTGCTTTTCTGGACTACTAGTGCTTGTGGGTTTATGGGTTACGTTCAGTATCAGCAACTTGTTGAGAAGGGTTACACTCCTCTTAAAGATGCCAGTTACTTGGACCAATGA

Protein Analysis

116

Amino Acids

13.04

Weight (kDa)

5.4

Isoelectric Point (pI)

33.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AciI CCGC 1 cut(s) 215
AcoI YGGCCR 1 cut(s) 216
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 133
AhlI ACTAGT 1 cut(s) 257
AluBI AGCT 2 cut(s) 19, 226
AluI AGCT 2 cut(s) 19, 226
Alw26I GTCTC 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 90
AoxI GGCC 3 cut(s) 94, 189, 216
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 3 cut(s) 95, 190, 343
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 1 cut(s) 90
AvaII GGWCC 1 cut(s) 343
BanI GGYRCC 1 cut(s) 232
BccI CCATC 1 cut(s) 140
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BcoDI GTCTC 1 cut(s) 119
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 1 cut(s) 258
BfoI RGCGCY 1 cut(s) 79
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 90
BmgT120I GGNCC 3 cut(s) 95, 190, 343
BmiI GGNNCC 2 cut(s) 97, 234
BmsI GCATC 2 cut(s) 202, 319
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 91, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 91, 219
BseLI CCNNNNNNNGG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 3 cut(s) 71, 236, 309
BseX3I CGGCCG 1 cut(s) 216
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 3 cut(s) 96, 191, 218
BshNI GGYRCC 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 219
BsiHKCI CYCGRG 1 cut(s) 90
BsiSI CCGG 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 3 cut(s) 96, 191, 218
Bso31I GGTCTC 1 cut(s) 119
BsoBI CYCGRG 1 cut(s) 90
BspACI CCGC 1 cut(s) 215
BspANI GGCC 3 cut(s) 96, 191, 218
BspLI GGNNCC 2 cut(s) 97, 234
BspT107I GGYRCC 1 cut(s) 232
BspTNI GGTCTC 1 cut(s) 119
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 91, 219
Bst4CI ACNGT 2 cut(s) 113, 139
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 1 cut(s) 78
BstMAI GTCTC 1 cut(s) 119
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 2 cut(s) 232, 241
BstXI CCANNNNNNTGG 1 cut(s) 340
BstZI CGGCCG 1 cut(s) 216
BsuRI GGCC 3 cut(s) 96, 191, 218
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 3 cut(s) 95, 190, 343
Csp6I GTAC 1 cut(s) 64
CviAII CATG 1 cut(s) 175
CviJI RGCY 8 cut(s) 14, 19, 36, 96, 151, 191, 218, 226
CviKI_1 RGCY 8 cut(s) 14, 19, 36, 96, 151, 191, 218, 226
CviQI GTAC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 216
EagI CGGCCG 1 cut(s) 216
EclXI CGGCCG 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 343
Eco52I CGGCCG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 90
EcoO109I RGGNCCY 2 cut(s) 95, 190
FaeI CATG 1 cut(s) 178
FaiI YATR 3 cut(s) 176, 185, 275
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 258
GlaI GCGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 216
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 3 cut(s) 96, 191, 218
HapII CCGG 1 cut(s) 236
HhaI GCGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HinfI GANTC 1 cut(s) 164
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 37
Hpy188III TCNNGA 5 cut(s) 90, 133, 143, 209, 250
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 3 cut(s) 58, 165, 301
HpyCH4III ACNGT 2 cut(s) 113, 139
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 2 cut(s) 232, 241
HpySE526I ACGT 1 cut(s) 282
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 5 cut(s) 164, 173, 235, 249, 346
LweI GCATC 2 cut(s) 202, 319
MaeI CTAG 1 cut(s) 258
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 4 cut(s) 197, 278, 311, 335
MlyI GAGTC 1 cut(s) 158
MnlI CCTC 6 cut(s) 86, 89, 92, 116, 214, 330
MseI TTAA 1 cut(s) 324
MspI CCGG 1 cut(s) 236
MwoI GCNNNNNNNGC 2 cut(s) 232, 241
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 2 cut(s) 97, 234
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 97, 234
PspPI GGNCC 3 cut(s) 95, 190, 343
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 216
Sau96I GGNCC 3 cut(s) 95, 190, 343
SchI GAGTC 1 cut(s) 158
SetI ASST 4 cut(s) 21, 50, 228, 285
SfaNI GCATC 2 cut(s) 202, 319
SinI GGWCC 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SpeI ACTAGT 1 cut(s) 257
SsiI CCGC 1 cut(s) 215
SspMI CTAG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 113, 139
TaiI ACGT 1 cut(s) 285
TaqI TCGA 1 cut(s) 108
TatI WGTACW 1 cut(s) 63
TauI GCSGC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TseFI GTSAC 1 cut(s) 197
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 343
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.