Rmu_co8125962.1_g000001

UDP-Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8125962.1
OG0000975
Physical Location & Seq
Reverse (-)
2 .. 309
308 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8125962.1_g000001.1.cds

Sequence Viewer

Length: 308 bp
atgagttccttggcagtaggcaataagcctcatgttgtctgcattcctttgccatttcagagccatataaaggcaatgcttcagttagctcaactcctccaccacagaggttttcatataacctttgtcaacacagacttcaaccacaagcgctttcttaaatctcttggacccaactctcttgatcgctttcccgattttcggtttgaaactattcctgatggccttccaagttcagatgaaaaggagtcccaagacatccctttgctttgtgattccctcagaagaaattgcttggctccgttccg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

103

Amino Acids

11.77

Weight (kDa)

8.6

Isoelectric Point (pI)

65.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 65
AfeI AGCGCT 1 cut(s) 152
AfiI CCNNNNNNNGG 2 cut(s) 70, 201
AgsI TTSAA 2 cut(s) 142, 209
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Aor51HI AGCGCT 1 cut(s) 152
AoxI GGCC 1 cut(s) 223
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 170
AvaII GGWCC 1 cut(s) 170
BccI CCATC 1 cut(s) 215
BfoI RGCGCY 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 2 cut(s) 172, 300
BsaJI CCNNGG 1 cut(s) 9
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 201
Bse3DI GCAATG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 9
BseGI GGATG 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 70, 201
BseMI GCAATG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 295
BseRI GAGGAG 1 cut(s) 86
BshFI GGCC 1 cut(s) 225
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 70, 201
BsmFI GGGAC 1 cut(s) 235
BsmI GAATGC 1 cut(s) 42
BsnI GGCC 1 cut(s) 225
Bsp143I GATC 1 cut(s) 184
BspANI GGCC 1 cut(s) 225
BspCNI CTCAG 1 cut(s) 294
BspLI GGNNCC 2 cut(s) 172, 300
BsrDI GCAATG 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 9
BssMI GATC 1 cut(s) 184
BssT1I CCWWGG 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 281
BstF5I GGATG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 1 cut(s) 153
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BsuRI GGCC 1 cut(s) 225
BtsCI GGATG 1 cut(s) 258
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 1 cut(s) 170
CviAII CATG 1 cut(s) 32
CviJI RGCY 5 cut(s) 28, 63, 89, 225, 299
CviKI_1 RGCY 5 cut(s) 28, 63, 89, 225, 299
DdeI CTNAG 1 cut(s) 281
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 170
Eco47III AGCGCT 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 35
FaiI YATR 5 cut(s) 33, 66, 68, 117, 119
FaqI GGGAC 1 cut(s) 235
FatI CATG 1 cut(s) 31
FokI GGATG 1 cut(s) 245
GlaI GCGC 1 cut(s) 152
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 1 cut(s) 225
HhaI GCGC 1 cut(s) 153
Hin1II CATG 1 cut(s) 35
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 2 cut(s) 248, 275
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 60, 238, 284
Hpy188III TCNNGA 3 cut(s) 182, 194, 218
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 42
HpyF3I CTNAG 1 cut(s) 281
Hsp92II CATG 1 cut(s) 35
HspAI GCGC 1 cut(s) 151
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 1 cut(s) 231
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 1 cut(s) 297
MluCI AATT 1 cut(s) 289
MlyI GAGTC 1 cut(s) 257
MnlI CCTC 4 cut(s) 39, 101, 107, 290
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 42
NdeII GATC 1 cut(s) 184
NlaIII CATG 1 cut(s) 35
NlaIV GGNNCC 2 cut(s) 172, 300
PctI GAATGC 1 cut(s) 42
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 275
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PspN4I GGNNCC 2 cut(s) 172, 300
PspPI GGNCC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 159
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 257
SetI ASST 3 cut(s) 91, 112, 125
SgeI CNNG 9 cut(s) 22, 44, 160, 179, 194, 206, 230, 243, 266
SinI GGWCC 1 cut(s) 170
Sse9I AATT 1 cut(s) 289
StyI CCWWGG 1 cut(s) 9
TasI AATT 1 cut(s) 289
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TspDTI ATGAA 2 cut(s) 104, 255
TspGWI ACGGA 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.