Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000975

Physical Location & Seq

Genomic Coordinates Forward (+)

25997804 .. 26000084

Gene Structure 2281 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG252000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGGTTCAATAGATGCAGCAGGATCCAACAAACTGCATGCAGTTTGTGTCCCTTACCCAGCACAAGGCCATGTCAAACCCATGATGCAATTAGTCAAGCTTATGCACTCGAGGGGATTCCACATTACCTTTGTCAACACCGAGTTCAATCACAGGCGCTTAGTTCGGTCCAAAGGTTCCGACTTATCCGTTGAGGGCCTAGTGGATTTCCAGTTTGAGACCATACCGGATGGGCTGCCACCTTCGGATAAAGATGTGACACAAGATGTCCCGGCTTTATGCGACTCCACCAGGAAAACTTGTCTAGGCCCTTTTAAGGAGCTGGTGATAAAGATCAATTCTTCATGTGAAGTGCCAAAAGTTAGTTGTGTAATCACAGATGGTGTGATGGGATTTGGGAGGGAAGCTGCTAAGGAATTAGGGATTCCTGAGGTTCAATTTTGGACCGCCTCTGCTTGTGGCTTCATGGCTTACCTGCACTATAGTGAACTAGCCAAACGAGGAATTGTTCCTTTTCAAGATGAAGAATACATGCATGACGGTACACTGAATACACAAATTGACTGGATCCCAGGCATGAAAAATGTCAGGCTCAAGGACAATCCTAGTTTCATCAGAGTTACTGATGTCAATGATATAATGTTCGATTTCATGGGATCCGAAGCACAAAACTGTTTGACATCTTCAGCAATCATCTTCAACACATTCGATGAATTGGAACACGAACTGTTAGAATCAATATCAGCCAAGTTTCCCAACTTTTGCACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

256

Amino Acids

28.51

Weight (kDa)

5.24

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	13 - 140	6.7e-08	Glycosyltransferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000975)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20571 FvH4_1g20572 FvH4_3g17510
malus_domestica	MD00G1053100.v1.1 MD08G1185400.v1.1 MD09G1142900.v1.1 MD09G1143000.v1.1 MD15G1370900.v1.1 MD17G1125300.v1.1 MD17G1126600.v1.1
prunus_persica	Prupe.3G188800_v2.0.a1 Prupe.4G236900_v2.0.a1 Prupe.4G237100_v2.0.a1 Prupe.4G237200_v2.0.a1 Prupe.6G190200_v2.0.a1
pyrus_communis	pycom01g06040 pycom09g06270 pycom13g19930
rosa_chinensis	RchiOBHm_Chr2g0112951 RchiOBHm_Chr3g0480671 RchiOBHm_Chr5g0029041 RchiOBHm_Chr7g0243721
rosa_laevigata	RLG00000018024 RLG00000020448 RLG00000020751
rosa_multiflora	Rmu_co8020420.1_g000001 Rmu_co8125962.1_g000001 Rmu_co8230237.1_g000001 Rmu_sc0000258.1_g000077 Rmu_sc0000795.1_g000119 Rmu_sc0001021.1_g000012 Rmu_sc0002351.1_g000079 Rmu_sc0002351.1_g000085 Rmu_sc0003444.1_g000014 Rmu_sc0014086.1_g000001 Rmu_sc0031215.1_g000001 Rmu_sc0037859.1_g000001
rosa_roxburghii	Rroxscaffold_1G00050790 Rroxscaffold_1G00050830 Rroxscaffold_2G00094610 Rroxscaffold_2G00097670 Rroxscaffold_2G00130970 Rroxscaffold_2G00131070 Rroxscaffold_3G00221940 Rroxscaffold_3G00248020
rosa_rugosa	Rorug02G0183200 Rorug05G0112400 Rorug05G0112700 Rorug07G0222800 Rorug07G0264200
rosa_samantha	Rh2BG252000 Rh2BG252100 Rh2BG517500 Rh2BG518600 Rh2DG246400 Rh3AG236900 Rh5BG202900 Rh5BG203400 Rh7CG493300 Rh7CG493500 Rh7CG493900
rosa_wichuraiana	Rw2G018670 Rw5G018620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	483
AciI	CCGC	1 cut(s)	447
AclWI	GGATC	6 cut(s)	18, 31, 562, 575, 651, 664
AcuI	CTGAAG	1 cut(s)	669
AcvI	CACGTG	1 cut(s)	768
AfaI	GTAC	1 cut(s)	544
AfiI	CCNNNNNNNGG	2 cut(s)	65, 316
AgsI	TTSAA	5 cut(s)	9, 148, 437, 518, 700
AjnI	CCWGG	2 cut(s)	290, 571
AleI	CACNNNNGTG	1 cut(s)	483
AluBI	AGCT	3 cut(s)	100, 322, 407
AluI	AGCT	3 cut(s)	100, 322, 407
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	6 cut(s)	18, 31, 562, 575, 651, 664
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	3 cut(s)	67, 196, 307
ApeKI	GCWGC	3 cut(s)	17, 235, 407
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	4 cut(s)	168, 196, 308, 444
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	2 cut(s)	168, 444
AxyI	CCTNAGG	1 cut(s)	429
BamHI	GGATCC	3 cut(s)	23, 567, 656
BbrPI	CACGTG	1 cut(s)	768
BbvI	GCAGC	3 cut(s)	29, 222, 394
BccI	CCATC	3 cut(s)	224, 374, 382
BciT130I	CCWGG	2 cut(s)	292, 573
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	4 cut(s)	200, 305, 491, 606
BfmI	CTRYAG	1 cut(s)	481
BfoI	RGCGCY	1 cut(s)	160
BfuAI	ACCTGC	1 cut(s)	483
BisI	GCNGC	3 cut(s)	18, 236, 408
BlsI	GCNGC	3 cut(s)	19, 237, 409
Bme1390I	CCNGG	3 cut(s)	272, 292, 573
Bme18I	GGWCC	2 cut(s)	168, 444
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	4 cut(s)	168, 196, 308, 444
BmiI	GGNNCC	4 cut(s)	25, 178, 569, 658
BmrFI	CCNGG	3 cut(s)	272, 292, 573
BmsI	GCATC	2 cut(s)	4, 75
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	1 cut(s)	578
BpuMI	CCSGG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	768
BsaBI	GATNNNNATC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	571
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 316
Bse1I	ACTGG	2 cut(s)	211, 569
Bse21I	CCTNAGG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	332
BseBI	CCWGG	2 cut(s)	292, 573
BseDI	CCNNGG	1 cut(s)	571
BseGI	GGATG	1 cut(s)	235
BseJI	GATNNNNATC	1 cut(s)	332
BseLI	CCNNNNNNNGG	2 cut(s)	65, 316
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	2 cut(s)	211, 569
BseXI	GCAGC	3 cut(s)	29, 222, 394
BseYI	CCCAGC	1 cut(s)	58
BsgI	GTGCAG	1 cut(s)	461
BshFI	GGCC	3 cut(s)	69, 198, 309
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	227, 272
BslFI	GGGAC	2 cut(s)	35, 254
BslI	CCNNNNNNNGG	2 cut(s)	65, 316
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	2 cut(s)	35, 254
BsnI	GGCC	3 cut(s)	69, 198, 309
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	109
Bsp143I	GATC	4 cut(s)	23, 333, 567, 656
BspACI	CCGC	1 cut(s)	447
BspANI	GGCC	3 cut(s)	69, 198, 309
BspCNI	CTCAG	1 cut(s)	421
BspLI	GGNNCC	4 cut(s)	25, 178, 569, 658
BspMI	ACCTGC	1 cut(s)	483
BspPI	GGATC	6 cut(s)	18, 31, 562, 575, 651, 664
BspTNI	GGTCTC	1 cut(s)	212
BsrI	ACTGG	2 cut(s)	211, 569
BssECI	CCNNGG	1 cut(s)	571
BssMI	GATC	4 cut(s)	23, 333, 567, 656
Bst2UI	CCWGG	2 cut(s)	292, 573
Bst4CI	ACNGT	3 cut(s)	542, 674, 729
BstBAI	YACGTR	1 cut(s)	768
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	3 cut(s)	160, 411, 429
BstF5I	GGATG	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	4 cut(s)	26, 336, 570, 659
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	23, 333, 567, 656
BstNI	CCWGG	2 cut(s)	292, 573
BstNSI	RCATGY	2 cut(s)	41, 535
BstSCI	CCNGG	3 cut(s)	270, 290, 571
BstSFI	CTRYAG	1 cut(s)	481
BstV1I	GCAGC	3 cut(s)	29, 222, 394
BstX2I	RGATCY	3 cut(s)	23, 567, 656
BstYI	RGATCY	3 cut(s)	23, 567, 656
Bsu36I	CCTNAGG	1 cut(s)	429
BsuRI	GGCC	3 cut(s)	69, 198, 309
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	545
BveI	ACCTGC	1 cut(s)	483
Cac8I	GCNNGC	1 cut(s)	39
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	4 cut(s)	168, 196, 308, 444
Csp6I	GTAC	1 cut(s)	543
CviAII	CATG	9 cut(s)	38, 71, 82, 345, 466, 532, 536, 577, 652
CviQI	GTAC	1 cut(s)	543
DdeI	CTNAG	3 cut(s)	160, 411, 429
DpnI	GATC	4 cut(s)	25, 335, 569, 658
DpnII	GATC	4 cut(s)	23, 333, 567, 656
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	2 cut(s)	168, 444
Eco57I	CTGAAG	1 cut(s)	669
Eco72I	CACGTG	1 cut(s)	768
Eco81I	CCTNAGG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	109
EcoO109I	RGGNCCY	2 cut(s)	196, 308
EcoRII	CCWGG	2 cut(s)	290, 571
EcoT22I	ATGCAT	1 cut(s)	537
FaeI	CATG	9 cut(s)	41, 74, 85, 348, 469, 535, 539, 580, 655
FaqI	GGGAC	2 cut(s)	35, 254
FatI	CATG	9 cut(s)	37, 70, 81, 344, 465, 531, 535, 576, 651
Fnu4HI	GCNGC	3 cut(s)	18, 236, 408
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	3 cut(s)	18, 236, 408
FspBI	CTAG	4 cut(s)	200, 305, 491, 606
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	3 cut(s)	18, 236, 408
GsaI	CCCAGC	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	3 cut(s)	69, 198, 309
HapII	CCGG	2 cut(s)	227, 272
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	9 cut(s)	41, 74, 85, 348, 469, 535, 539, 580, 655
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	1 cut(s)	98
HinfI	GANTC	4 cut(s)	117, 284, 424, 734
HpaII	CCGG	2 cut(s)	227, 272
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	3 cut(s)	136, 488, 545
Hpy188I	TCNGA	4 cut(s)	181, 247, 617, 661
Hpy188III	TCNNGA	2 cut(s)	428, 518
Hpy8I	GTNNAC	3 cut(s)	136, 488, 545
HpyAV	CCTTC	1 cut(s)	252
HpyCH4III	ACNGT	3 cut(s)	542, 674, 729
HpyCH4IV	ACGT	1 cut(s)	767
HpyCH4V	TGCA	8 cut(s)	17, 37, 41, 88, 106, 478, 535, 765
HpyF3I	CTNAG	3 cut(s)	160, 411, 429
HpySE526I	ACGT	1 cut(s)	767
Hsp92II	CATG	9 cut(s)	41, 74, 85, 348, 469, 535, 539, 580, 655
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	23, 333, 567, 656
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	3 cut(s)	29, 222, 394
LweI	GCATC	2 cut(s)	4, 75
MaeI	CTAG	4 cut(s)	200, 305, 491, 606
MaeII	ACGT	1 cut(s)	767
MaeIII	GTNAC	2 cut(s)	256, 619
MalI	GATC	4 cut(s)	25, 335, 569, 658
MboI	GATC	4 cut(s)	23, 333, 567, 656
MboII	GAAGA	4 cut(s)	333, 536, 675, 688
MflI	RGATCY	3 cut(s)	23, 567, 656
MluCI	AATT	7 cut(s)	89, 337, 416, 437, 504, 558, 713
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	51, 204
MnlI	CCTC	6 cut(s)	105, 187, 393, 424, 460, 494
Mph1103I	ATGCAT	1 cut(s)	537
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	483
MspI	CCGG	2 cut(s)	227, 272
MspR9I	CCNGG	3 cut(s)	272, 292, 573
MvaI	CCWGG	2 cut(s)	292, 573
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	4 cut(s)	23, 333, 567, 656
NlaIII	CATG	9 cut(s)	41, 74, 85, 348, 469, 535, 539, 580, 655
NlaIV	GGNNCC	4 cut(s)	25, 178, 569, 658
NmuCI	GTSAC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	537
NspI	RCATGY	2 cut(s)	41, 535
OliI	CACNNNNGTG	1 cut(s)	483
PaeI	GCATGC	1 cut(s)	41
PaeR7I	CTCGAG	1 cut(s)	109
PfeI	GAWTC	3 cut(s)	117, 424, 734
PkrI	GCNGC	3 cut(s)	19, 237, 409
PleI	GAGTC	1 cut(s)	278
PmaCI	CACGTG	1 cut(s)	768
PmlI	CACGTG	1 cut(s)	768
PpsI	GAGTC	1 cut(s)	278
Ppu21I	YACGTR	1 cut(s)	768
Psp6I	CCWGG	2 cut(s)	290, 571
PspCI	CACGTG	1 cut(s)	768
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	2 cut(s)	290, 571
PspN4I	GGNNCC	4 cut(s)	25, 178, 569, 658
PspPI	GGNCC	4 cut(s)	168, 196, 308, 444
PspXI	VCTCGAGB	1 cut(s)	109
PsuI	RGATCY	3 cut(s)	23, 567, 656
RsaI	GTAC	1 cut(s)	544
RsaNI	GTAC	1 cut(s)	543
RseI	CAYNNNNRTG	1 cut(s)	483
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	18, 236, 408
Sau3AI	GATC	4 cut(s)	23, 333, 567, 656
Sau96I	GGNCC	4 cut(s)	168, 196, 308, 444
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	3 cut(s)	272, 292, 573
SetI	ASST	9 cut(s)	102, 131, 178, 244, 324, 409, 435, 477, 770
SfaNI	GCATC	2 cut(s)	4, 75
SfcI	CTRYAG	1 cut(s)	481
Sfr274I	CTCGAG	1 cut(s)	109
SinI	GGWCC	2 cut(s)	168, 444
SlaI	CTCGAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	483
SmlI	CTYRAG	2 cut(s)	109, 593
SmoI	CTYRAG	2 cut(s)	109, 593
SphI	GCATGC	1 cut(s)	41
Sse9I	AATT	7 cut(s)	89, 337, 416, 437, 504, 558, 713
SsiI	CCGC	1 cut(s)	447
SspMI	CTAG	4 cut(s)	200, 305, 491, 606
StyD4I	CCNGG	3 cut(s)	270, 290, 571
TaaI	ACNGT	3 cut(s)	542, 674, 729
TaiI	ACGT	1 cut(s)	770
TaqI	TCGA	3 cut(s)	110, 645, 708
TaqII	GACCGA	1 cut(s)	156
TasI	AATT	7 cut(s)	89, 337, 416, 437, 504, 558, 713
TfiI	GAWTC	3 cut(s)	117, 424, 734
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	17, 235, 407
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	7 cut(s)	333, 454, 537, 593, 601, 640, 726
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	168, 444
XceI	RCATGY	2 cut(s)	41, 535
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	4 cut(s)	200, 305, 491, 606
Zsp2I	ATGCAT	1 cut(s)	537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.